View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6434_low_3 (Length: 344)
Name: NF6434_low_3
Description: NF6434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6434_low_3 |
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| [»] scaffold0008 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 31525667 - 31525386
Alignment:
| Q |
1 |
cgtcttggacaatagctgactccttcaattttccttctaactgtgcaacatgtggctcagagcacgc-------ttctctttatagttatcccatttgta |
93 |
Q |
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| T |
31525667 |
cgtcttggacaatagctgactccttcaattttccatctaactgtgcaacctgtggctcagagcacgcatcacgcttctcttaatagttatctcatttgta |
31525568 |
T |
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| Q |
94 |
tttcttcatcctttatcccatttgcctcaccaaaacatccacaataattatactccaagaaatcac-ttgataattttgtaaaaaagtatagtacaacca |
192 |
Q |
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| T |
31525567 |
tttcttcatcctttatcccattcgcctcaccaaaacatccccaataattatactccaagaaatcactttgataattttgtaaaaaagtatagtacaacca |
31525468 |
T |
|
| Q |
193 |
catagttgtctgatttggattaattgacatgttcctatatgccc-tgtgcctcaatttattcttccattgtcccttttgtaatc |
275 |
Q |
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| T |
31525467 |
catagttgtctgatttggatgaattgacatgttcc--tatgcccttgtgcttcaatttattcttccattgtcccttttctaatc |
31525386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 300 - 343
Target Start/End: Complemental strand, 31524059 - 31524016
Alignment:
| Q |
300 |
ttgaaggaaaattttgaaccttatagtaaattccattggtgatg |
343 |
Q |
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| T |
31524059 |
ttgaaggaaaattttgaaccttatagtaaattccattggtgatg |
31524016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 300 - 343
Target Start/End: Original strand, 51523 - 51566
Alignment:
| Q |
300 |
ttgaaggaaaattttgaaccttatagtaaattccattggtgatg |
343 |
Q |
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| T |
51523 |
ttgaaggaaattttttaaccttgtagtaaattccattggtgatg |
51566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 194
Target Start/End: Complemental strand, 47236715 - 47236669
Alignment:
| Q |
148 |
ccaagaaatcacttgataattttgtaaaaaagtatagtacaaccaca |
194 |
Q |
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| T |
47236715 |
ccaagaattcacttgataatcttgtaaaaatgtatagcacaaccaca |
47236669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 210
Target Start/End: Complemental strand, 27602893 - 27602852
Alignment:
| Q |
169 |
ttgtaaaaaagtatagtacaaccacatagttgtctgatttgg |
210 |
Q |
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| T |
27602893 |
ttgtaagaaagtatagtacgaccacaaagttgtctgatttgg |
27602852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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