View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6434_low_6 (Length: 249)
Name: NF6434_low_6
Description: NF6434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6434_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 3800404 - 3800200
Alignment:
| Q |
1 |
aagtagtgttgcaaagccaccattctccaaaattatttaaagtttgcatctcttgcaccatattatcaaataagatcttatctacaccacgccatgggat |
100 |
Q |
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| T |
3800404 |
aagtagtgttgcaaagccaccattctccaaaattatttaaagtttgcatctcttgcaccatattatcaaataagatcttatctacgccacgccatgggat |
3800305 |
T |
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| Q |
101 |
gtttgttgtgtccatcataggtatatccggggagatttgaatttcttgttttttggttggatttcctgcaatgccaaaacgagatcatggaatatttgat |
200 |
Q |
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| T |
3800304 |
gtttgttgtgtccatcataggtatatccggggagatttgaatttcttgttttttggttggatttcctgcaatgccaaaacgagatcatgaaatatttgat |
3800205 |
T |
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| Q |
201 |
gttga |
205 |
Q |
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||||| |
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| T |
3800204 |
gttga |
3800200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 3789703 - 3789888
Alignment:
| Q |
1 |
aagtagtgttgcaaagccaccattctccaaaattatttaaagtttgcatctcttgcaccatattatcaaataagatcttatctacaccacgccatgggat |
100 |
Q |
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|||||||||||||||||||||||||||||||||| || |||||| ||||||||||| | || |||||| |||||||||||||| || |||||||||| |
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| T |
3789703 |
aagtagtgttgcaaagccaccattctccaaaatt---tatagtttgtatctcttgcacaaaatgatcaaagaagatcttatctacgccgcgccatgggaa |
3789799 |
T |
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| Q |
101 |
gtttgttgtgtccatcataggtatatccggggagatttgaatttcttgttttttggttggatttcctgcaatgccaaaacgagatcatg |
189 |
Q |
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||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||| |||| ||||||||| |
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| T |
3789800 |
gtttgttgtgttcatcataggtatatcaggggagatttgaatttcttgttttttggtgggatttcctacaatgcgaaaaggagatcatg |
3789888 |
T |
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