View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6435_high_5 (Length: 250)
Name: NF6435_high_5
Description: NF6435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6435_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 27257041 - 27256799
Alignment:
| Q |
1 |
attaatacacaagataaacttctttttctatttgtannnnnnnncagtctagagacaataatacacaagataaacttctctttctattttggataaactt |
100 |
Q |
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| T |
27257041 |
attaatacacaagataaacttctttttctatttgtattttttttcagtctagagacaataatacacaagataaacttctctttctattttggataaactt |
27256942 |
T |
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| Q |
101 |
ctcaaagaagttattatgcaaaatgaaatatcaaaagaatctttcaaaaagtgaaggaaggaatgtatgaatataatcaatcgaatgaacatcttcctcg |
200 |
Q |
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| T |
27256941 |
ctcaaagaagttattatgcaaaatgaaatatcaaaagaatctttcaaaaagtgaaggaaggaatgtatgaatataatcaatcgaatgaacatcttcctcg |
27256842 |
T |
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| Q |
201 |
gaatgcagcttgaaaatgcgtgctcctgccatatgtctctgct |
243 |
Q |
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| T |
27256841 |
gaatgcagcttgaaaatgcgtgctcttgccacatgtctctgct |
27256799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 87 - 189
Target Start/End: Complemental strand, 27258343 - 27258241
Alignment:
| Q |
87 |
ttttggataaacttctcaaagaagttattatgcaaaatgaaatatcaaaagaatctttcaaaaagtgaaggaaggaatgtatgaatataatcaatcgaat |
186 |
Q |
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| T |
27258343 |
ttttggataaacttcttaaagaagttattatgcaaaatgaaatatcaaaagaatttttcaaaaagcgatggaaggaatgtatgaatataatcaatcgaat |
27258244 |
T |
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| Q |
187 |
gaa |
189 |
Q |
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||| |
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| T |
27258243 |
gaa |
27258241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 27235120 - 27235075
Alignment:
| Q |
94 |
taaacttctcaaagaagttattatgcaaaatgaaatatcaaaagaa |
139 |
Q |
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| T |
27235120 |
taaacttctcagagaagttcttttgcaaaaagaaatatcaaaagaa |
27235075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 33310775 - 33310729
Alignment:
| Q |
187 |
gaacatcttcctcggaatgcagcttgaaaatgcgtgctcctgccata |
233 |
Q |
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| T |
33310775 |
gaacatcttcctcggaatgcagcttgaaaatgcgtgctcctaccata |
33310729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 237
Target Start/End: Complemental strand, 8675814 - 8675764
Alignment:
| Q |
187 |
gaacatcttcctcggaatgcagcttgaaaatgcgtgctcctgccatatgtc |
237 |
Q |
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| T |
8675814 |
gaacatcttccttggaatgcagcttgaaaacgtgtgcttctgccacatgtc |
8675764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 237
Target Start/End: Original strand, 31315649 - 31315695
Alignment:
| Q |
191 |
atcttcctcggaatgcagcttgaaaatgcgtgctcctgccatatgtc |
237 |
Q |
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| T |
31315649 |
atcttccttggaatgcaacttgaaaatgtgtgctcctgccacatgtc |
31315695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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