View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6435_high_6 (Length: 217)
Name: NF6435_high_6
Description: NF6435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6435_high_6 |
 | |
|
| [»] scaffold0349 (2 HSPs) |
| | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
| [»] scaffold0277 (2 HSPs) |
| | |
|
| [»] scaffold0419 (1 HSPs) |
| | |
|
| [»] scaffold0038 (3 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 169; Significance: 8e-91; HSPs: 24)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 27604758 - 27604557
Alignment:
| Q |
1 |
ctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgag |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27604758 |
ctacacgacaaagggtcgcgtcgttttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtcaagcattggctgag |
27604659 |
T |
|
| Q |
101 |
catnnnnnnnggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgata |
200 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27604658 |
cataaaaaaaggtttcaaaatgatgaggataacataaagaggttgcagcgatggaaagtggctctgagccaggctgctaacttttccggctaccatgata |
27604559 |
T |
|
| Q |
201 |
gt |
202 |
Q |
| |
|
|| |
|
|
| T |
27604558 |
gt |
27604557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 27718432 - 27718231
Alignment:
| Q |
1 |
ctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgag |
100 |
Q |
| |
|
||||| ||||||||||||| || |||||||||||||||| || ||||||||| || | ||||||||||| ||||||||||| ||| |||||||||||||| |
|
|
| T |
27718432 |
ctacaagacaaagggtcgcctcgttttgcctgttttcttcggcgtggaacctactaacgtgcgacatcagaaaggtagttatggtgaagcattggctgag |
27718333 |
T |
|
| Q |
101 |
catnnnnnnnggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgata |
200 |
Q |
| |
|
||| |||||||||||||| || ||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
27718332 |
catgaaaagaggtttcaaaatgataagaataacatggagaggttgcagcgatggaaagtggctctgagccaggctgctaacttgtccggctaccatgata |
27718233 |
T |
|
| Q |
201 |
gt |
202 |
Q |
| |
|
|| |
|
|
| T |
27718232 |
gt |
27718231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 27611055 - 27610854
Alignment:
| Q |
1 |
ctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgag |
100 |
Q |
| |
|
||||| ||||||||||||| || |||||||||||||||| || ||||||||| || | ||||||||||| ||||||||||| ||| |||||||||||||| |
|
|
| T |
27611055 |
ctacaagacaaagggtcgcctcgttttgcctgttttcttcggcgtggaacctactaaagtgcgacatcagaaaggtagttatggtgaagcattggctgag |
27610956 |
T |
|
| Q |
101 |
catnnnnnnnggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgata |
200 |
Q |
| |
|
||| |||||||||||||| || ||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
27610955 |
catgaaaagaggtttcaaaatgataagaataacatggagaggttgcagggatggaaagtggctctgagccaggctgcaaacttttccggctaccatgata |
27610856 |
T |
|
| Q |
201 |
gt |
202 |
Q |
| |
|
|| |
|
|
| T |
27610855 |
gt |
27610854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 27593073 - 27592872
Alignment:
| Q |
1 |
ctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgag |
100 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
27593073 |
ctacaagacaaagggtcgccctgttttgcctgttttctttggtgtggatccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctgag |
27592974 |
T |
|
| Q |
101 |
catnnnnnnnggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgata |
200 |
Q |
| |
|
||| |||||||||||||| | | ||||| ||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
27592973 |
catgaaaagaggtttcaaaatgatccgaaaaacatggagaggttgcagggatggaaagacgctctgagccaggctgctaacttgtccggctaccatgata |
27592874 |
T |
|
| Q |
201 |
gt |
202 |
Q |
| |
|
|| |
|
|
| T |
27592873 |
gt |
27592872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 7 - 202
Target Start/End: Original strand, 26802582 - 26802777
Alignment:
| Q |
7 |
gacaaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnn |
106 |
Q |
| |
|
||||||||||||| || | |||||| |||||||||||||||| ||| || ||||||| ||||||| | |||| || ||| ||||||||||||||||| |
|
|
| T |
26802582 |
gacaaagggtcgcctcgtcttgcctattttctttggtgtggatcctactaatgtgcgccatcatacatgtagctatggtgaagcattggctgagcatgaa |
26802681 |
T |
|
| Q |
107 |
nnnnggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagt |
202 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
26802682 |
aaaaggtttcaaaatgataaggataacatggagaggttggagcgatggaaagtggctctgagccaggctgctaacttgtccggctaccatgatagt |
26802777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 7 - 202
Target Start/End: Complemental strand, 27698541 - 27698346
Alignment:
| Q |
7 |
gacaaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnn |
106 |
Q |
| |
|
||||||||||||| || |||||||||||||||| ||||||||||| || ||||| ||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
27698541 |
gacaaagggtcgcctcgttttgcctgttttcttcggtgtggaaccaactaatgtgagacatcataaaggtagttatggcaaagcattggctgagcatgaa |
27698442 |
T |
|
| Q |
107 |
nnnnggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagt |
202 |
Q |
| |
|
|||||||||||||| | | ||||| ||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
27698441 |
aagaggtttcaaaatgatccgaaaaacatggagaggttgcagggatggaaagaggctctgagccaggctgctaacttgtccggctaccatgatagt |
27698346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 27677667 - 27677466
Alignment:
| Q |
1 |
ctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgag |
100 |
Q |
| |
|
||||| ||||||||||||| || || ||||||||||||||| |||||||||| || |||||||||||| ||||||||||| ||| |||||||||||||| |
|
|
| T |
27677667 |
ctacaagacaaagggtcgcctcgttctgcctgttttctttgctgtggaacctactattgtgcgacatcagaaaggtagttatggtgaagcattggctgag |
27677568 |
T |
|
| Q |
101 |
catnnnnnnnggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgata |
200 |
Q |
| |
|
||| |||||||||||||| | | | ||| ||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
27677567 |
catgaaaagaggtttcaaaatgatccgaaaagcatggagaggttgcagggatggaaagaggctctgagccaggctgctaacttgtccggctaccatgata |
27677468 |
T |
|
| Q |
201 |
gt |
202 |
Q |
| |
|
|| |
|
|
| T |
27677467 |
gt |
27677466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 27679080 - 27679281
Alignment:
| Q |
1 |
ctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgag |
100 |
Q |
| |
|
||||| ||||||||||||| || || |||||||||||||||||||||||||| || ||||||||||| |||||||||||| ||| |||||||||||||| |
|
|
| T |
27679080 |
ctacaagacaaagggtcgcctcgttctgcctgttttctttggtgtggaacctactgttgtgcgacatcgtaaaggtagttatggtgaagcattggctgag |
27679179 |
T |
|
| Q |
101 |
catnnnnnnnggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgata |
200 |
Q |
| |
|
||| |||||||||||||| | | ||||| |||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
27679180 |
catgaaaagaggtttcaaaatgatccgaaaaacatggagaggttgcaaggatggaaaaaggctctgagccaggctgctaacttgtccggctaccatgata |
27679279 |
T |
|
| Q |
201 |
gt |
202 |
Q |
| |
|
|| |
|
|
| T |
27679280 |
gt |
27679281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 27706455 - 27706254
Alignment:
| Q |
1 |
ctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgag |
100 |
Q |
| |
|
||||| ||||||||||||| || || |||||||||| |||||||| |||||| || ||||||||||| |||||||||||| ||| |||||||||||||| |
|
|
| T |
27706455 |
ctacaagacaaagggtcgcctcgttctgcctgttttatttggtgtagaacctactattgtgcgacatcgtaaaggtagttatggtgaagcattggctgag |
27706356 |
T |
|
| Q |
101 |
catnnnnnnnggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgata |
200 |
Q |
| |
|
||| |||||||||||||| | | ||||| ||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
27706355 |
catgaaaagaggtttcaaaatgatccgaaaaacatggagaggttgcagggatggaaagaggctctgagccaggctgctaacttgtccggctaccatgata |
27706256 |
T |
|
| Q |
201 |
gt |
202 |
Q |
| |
|
|| |
|
|
| T |
27706255 |
gt |
27706254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 11 - 199
Target Start/End: Complemental strand, 27427649 - 27427461
Alignment:
| Q |
11 |
aagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnn |
110 |
Q |
| |
|
|||||| || || ||||||||||||||||||||||||||||| || ||||||||||||||| |||||| || ||||||||||||||||||||| |
|
|
| T |
27427649 |
aagggttgcctcgttttgcctgttttctttggtgtggaacctactgatgtgcgacatcatacaggtaggtatggtaaagcattggctgagcatgaaaata |
27427550 |
T |
|
| Q |
111 |
ggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgat |
199 |
Q |
| |
|
|||||||||||||| | | ||||| ||||||||||||||||||||||||||||||| | |||||||||||| || ||||||||||| |
|
|
| T |
27427549 |
ggtttcaaaatgatacgaaaaacatggagaggttgcagcaatggaaagtggctctgagtctggctgctaacttgcccagctaccatgat |
27427461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 28786412 - 28786607
Alignment:
| Q |
1 |
ctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgag |
100 |
Q |
| |
|
||||| |||||| |||||| || |||||||||||||||||||||| || ||| || ||||||||||||||| |||| |||| ||| |||||||||||| | |
|
|
| T |
28786412 |
ctacaagacaaaaggtcgcctcgttttgcctgttttctttggtgtcgatcctactaatgtgcgacatcatacaggtcgttatggtgaagcattggctggg |
28786511 |
T |
|
| Q |
101 |
catnnnnnnnggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccat |
196 |
Q |
| |
|
||| |||||||||||||| |||||||||| |||||||||| |||||||| ||||||||| ||| ||||||||||| |||||||||||| |
|
|
| T |
28786512 |
catgaaaagaggtttcaaaatgataaggataacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccat |
28786607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 28792533 - 28792728
Alignment:
| Q |
1 |
ctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgag |
100 |
Q |
| |
|
||||| |||||| |||||| || |||||||||||||||||||||| || ||| || ||||||||||||||| |||| |||| ||| |||||||||||| | |
|
|
| T |
28792533 |
ctacaagacaaaaggtcgcctcgttttgcctgttttctttggtgtcgatcctactaatgtgcgacatcatacaggtcgttatggtgaagcattggctggg |
28792632 |
T |
|
| Q |
101 |
catnnnnnnnggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccat |
196 |
Q |
| |
|
||| |||||||||||||| |||||||||| |||||||||| |||||||| ||||||||| ||| ||||||||||| |||||||||||| |
|
|
| T |
28792633 |
catgaaaagaggtttcaaaatgataaggataacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccat |
28792728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 196
Target Start/End: Original strand, 26884305 - 26884494
Alignment:
| Q |
7 |
gacaaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnn |
106 |
Q |
| |
|
||||||||||||| || ||||||||||||| |||||||||| ||| || ||||||||||||||| ||||||||| ||| ||||||||||||| ||| |
|
|
| T |
26884305 |
gacaaagggtcgcctcgttttgcctgtttttgttggtgtggatcctactgatgtgcgacatcatacaggtagttatggtgaagcattggctgaccatgaa |
26884404 |
T |
|
| Q |
107 |
nnnnggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccat |
196 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||| ||||||| ||||| |||| || | ||||||||| |||||||||||| |
|
|
| T |
26884405 |
aaaaggtttcaaaatgataaggataacatggagaggttgcagcgatggaaaatggctatgaggcaagttgctaacttgtccggctaccat |
26884494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 28781273 - 28781468
Alignment:
| Q |
1 |
ctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgag |
100 |
Q |
| |
|
||||| |||||| |||||| || ||||||||||||||||||||||||| ||| || ||||||||||||||| |||| ||| ||| |||||||||||| |
|
|
| T |
28781273 |
ctacaagacaaaaggtcgcctcgttttgcctgttttctttggtgtggatcctactaatgtgcgacatcatacaggtccttatggtgaagcattggctgga |
28781372 |
T |
|
| Q |
101 |
catnnnnnnnggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccat |
196 |
Q |
| |
|
||| |||||||||||||| |||||||||| |||||||||| |||||||| ||||||||| ||| ||||||||||| |||||||||||| |
|
|
| T |
28781373 |
catgaaaagaggtttcaaaatgataaggataacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccat |
28781468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 10 - 196
Target Start/End: Original strand, 26861756 - 26861942
Alignment:
| Q |
10 |
aaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnn |
109 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||| |||| ||| || ||||||||||||||| ||||| ||| ||| ||||||||||| ||||| |
|
|
| T |
26861756 |
aaagggtcgcgtcgttttgcctgttttctatggcatggatcctactaatgtgcgacatcatagaggtatttatggtgaagcattggctaagcatgaaaaa |
26861855 |
T |
|
| Q |
110 |
nggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccat |
196 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||| ||||||||| ||||||| ||| ||||||||||| || ||||||||| |
|
|
| T |
26861856 |
aggtttcaaaatgatatggataacatggagaggttgcagagatggaaagttgctctgaaccaagctgctaacttgtcaggctaccat |
26861942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 27724898 - 27724796
Alignment:
| Q |
1 |
ctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgag |
100 |
Q |
| |
|
||||| ||||||||||||| || |||||||||||||||| || ||||||||| || | ||||||||||| ||||||||||| ||| |||||||||||||| |
|
|
| T |
27724898 |
ctacaagacaaagggtcgcctcgttttgcctgttttcttcggcgtggaacctactaacgtgcgacatcagaaaggtagttatggtgaagcattggctgag |
27724799 |
T |
|
| Q |
101 |
cat |
103 |
Q |
| |
|
||| |
|
|
| T |
27724798 |
cat |
27724796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 24 - 183
Target Start/End: Complemental strand, 27531227 - 27531068
Alignment:
| Q |
24 |
ttttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggtttcaaaatga |
123 |
Q |
| |
|
||||||||||||| |||||||||| ||| || ||||||||||||| | |||||| || ||| ||||||| |||| |||| |||||||||||| |
|
|
| T |
27531227 |
ttttgcctgtttttattggtgtggatcctactgatgtgcgacatcacacaggtagatatggtgaagcattagctgtgcataaaaaaaagtttcaaaatga |
27531128 |
T |
|
| Q |
124 |
tgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaactt |
183 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||| ||||||||||| || |||||||| |
|
|
| T |
27531127 |
taaggataacactgagaggttgcagcaatggaaagaagctctgagccaagcggctaactt |
27531068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 31284435 - 31284524
Alignment:
| Q |
14 |
ggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcat |
103 |
Q |
| |
|
|||||| || ||||||| ||||||||||| ||||| |||||||||||||||||||||| ||||||||| || ||||||||||| ||||| |
|
|
| T |
31284435 |
ggtcgcctcgttttgcccgttttctttggcgtggatccttctcatgtgcgacatcatagaggtagttatggagaagcattggctaagcat |
31284524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 28227107 - 28227174
Alignment:
| Q |
24 |
ttttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagca |
91 |
Q |
| |
|
||||||| |||||| || ||||||||||||||||||||||||||| || || ||||| ||||||||| |
|
|
| T |
28227107 |
ttttgccaattttctatgatgtggaaccttctcatgtgcgacatcacaagggcagttatggtaaagca |
28227174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 165
Target Start/End: Original strand, 28234720 - 28234861
Alignment:
| Q |
24 |
ttttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggtttcaaaatga |
123 |
Q |
| |
|
||||||| |||||| || ||||||||||||||| ||||||||||| || || ||||| ||||||||| ||| ||| ||| ||| |||||| | |
|
|
| T |
28234720 |
ttttgccaattttctatgatgtggaaccttctcacgtgcgacatcacaagggcagttatggtaaagcactggatgatcatataaagaagttccaaaataa |
28234819 |
T |
|
| Q |
124 |
tgaggataacataaagaggttgcagcaatggaaagtggctct |
165 |
Q |
| |
|
|||||||||| ||||||||||| ||||||| ||||||| |
|
|
| T |
28234820 |
caaggataacatggagaggttgcagaaatggaagatggctct |
28234861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 103
Target Start/End: Original strand, 28325657 - 28325717
Alignment:
| Q |
43 |
tgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcat |
103 |
Q |
| |
|
||||||||||||||| ||||||||||| || || ||||| ||||||||| |||| |||||| |
|
|
| T |
28325657 |
tgtggaaccttctcacgtgcgacatcacaagggcagttatggtaaagcactggccgagcat |
28325717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 28181271 - 28181338
Alignment:
| Q |
24 |
ttttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagca |
91 |
Q |
| |
|
||||||| |||||| || ||||||||||||||| ||||||||||| || || ||||| ||||||||| |
|
|
| T |
28181271 |
ttttgccaattttctatgatgtggaaccttctcacgtgcgacatcacaagggcagttatggtaaagca |
28181338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 29826171 - 29826229
Alignment:
| Q |
11 |
aagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatca |
69 |
Q |
| |
|
|||||||| || |||||||| |||||| || |||||| |||||||||||||||||||| |
|
|
| T |
29826171 |
aagggtcgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgacatca |
29826229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 26811674 - 26811711
Alignment:
| Q |
32 |
gttttctttggtgtggaaccttctcatgtgcgacatca |
69 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
26811674 |
gttttctatggtgtggaaccttctcacgtgcgacatca |
26811711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0349 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: scaffold0349
Description:
Target: scaffold0349; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 3474 - 3272
Alignment:
| Q |
1 |
ctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgag |
100 |
Q |
| |
|
||||| ||||||||||||| || || |||||||||| ||||||||||||||| || ||||||||||| |||||||||||| ||| |||||||||||||| |
|
|
| T |
3474 |
ctacaagacaaagggtcgcctcgttctgcctgttttatttggtgtggaacctactattgtgcgacatcgtaaaggtagttatggtgaagcattggctgag |
3375 |
T |
|
| Q |
101 |
catnnnnnnnggtttcaaaatgatgag-gataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgat |
199 |
Q |
| |
|
||| |||||||||||||| | | ||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
3374 |
catgaaaagaggtttcaaaatgatccgaaaaaacatggagaggttgcagcgatggaaagtggctctgagccaggctgctaacttgtccggctaccatgat |
3275 |
T |
|
| Q |
200 |
agt |
202 |
Q |
| |
|
||| |
|
|
| T |
3274 |
agt |
3272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0349; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 14409 - 14208
Alignment:
| Q |
1 |
ctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgag |
100 |
Q |
| |
|
||||| ||||||||||||| || |||||||||||||||| || ||||||||| || | ||||||||||| ||||||||||| ||| |||||||||||||| |
|
|
| T |
14409 |
ctacaagacaaagggtcgcctcgttttgcctgttttcttcggcgtggaacctactaacgtgcgacatcagaaaggtagttatggtgaagcattggctgag |
14310 |
T |
|
| Q |
101 |
catnnnnnnnggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgata |
200 |
Q |
| |
|
||| |||||||||||||| | | ||||| ||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
14309 |
catgaaaagaggtttcaaaatgatccgaaaaacatggagaggttgcagggatggaaagaggctctgagccaggctgctaacttgtccggctaccatgata |
14210 |
T |
|
| Q |
201 |
gt |
202 |
Q |
| |
|
|| |
|
|
| T |
14209 |
gt |
14208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 92; Significance: 7e-45; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 11 - 199
Target Start/End: Original strand, 59714 - 59902
Alignment:
| Q |
11 |
aagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnn |
110 |
Q |
| |
|
|||||| || || ||||||||||||||||||||||||||||| || ||||||||||||||| |||||| || ||||||||||||||||||||| |
|
|
| T |
59714 |
aagggttgcctcgttttgcctgttttctttggtgtggaacctactgatgtgcgacatcatacaggtaggtatggtaaagcattggctgagcatgaaaata |
59813 |
T |
|
| Q |
111 |
ggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgat |
199 |
Q |
| |
|
|||||||||||||| | | ||||| ||||||||||||||||||||||||||||||| | |||||||||||| || ||||||||||| |
|
|
| T |
59814 |
ggtttcaaaatgatacgaaaaacatggagaggttgcagcaatggaaagtggctctgagtctggctgctaacttgcccagctaccatgat |
59902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 7e-45; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 11 - 199
Target Start/End: Original strand, 18073906 - 18074094
Alignment:
| Q |
11 |
aagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnn |
110 |
Q |
| |
|
|||||| || || ||||||||||||||||||||||||||||| || ||||||||||||||| |||||| || ||||||||||||||||||||| |
|
|
| T |
18073906 |
aagggttgcctcgttttgcctgttttctttggtgtggaacctactgatgtgcgacatcatacaggtaggtatggtaaagcattggctgagcatgaaaata |
18074005 |
T |
|
| Q |
111 |
ggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgat |
199 |
Q |
| |
|
|||||||||||||| | | ||||| ||||||||||||||||||||||||||||||| | |||||||||||| || ||||||||||| |
|
|
| T |
18074006 |
ggtttcaaaatgatacgaaaaacatggagaggttgcagcaatggaaagtggctctgagtctggctgctaacttgcccagctaccatgat |
18074094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 103
Target Start/End: Complemental strand, 5090984 - 5090905
Alignment:
| Q |
24 |
ttttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcat |
103 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||||||| |||| | || ||||| ||| ||||| | ||||||||| |
|
|
| T |
5090984 |
ttttgcctattttctatggtgtggaaccttctcatgtgcgatatcagactggaagttatggtgaagcacttgctgagcat |
5090905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 78
Target Start/End: Complemental strand, 17989065 - 17989019
Alignment:
| Q |
31 |
tgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtag |
78 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||||||| |||||| |
|
|
| T |
17989065 |
tgttttctttggtgtggaacc-tctgatgtgcgacatcatacaggtag |
17989019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: scaffold0277
Description:
Target: scaffold0277; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 4724 - 4529
Alignment:
| Q |
1 |
ctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgag |
100 |
Q |
| |
|
||||| ||||||||||||| || |||||||||||||||| || ||||||||| || | |||||||||| ||||||||||| ||| |||||||||||||| |
|
|
| T |
4724 |
ctacaagacaaagggtcgcctcgttttgcctgttttcttcggcgtggaacctactaacgtgcgacatctgaaaggtagttatggtgaagcattggctgag |
4625 |
T |
|
| Q |
101 |
catnnnnnnnggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccat |
196 |
Q |
| |
|
||| |||||||||||||| || ||||||| |||||||||| |||||||| ||||||||| ||| ||||||||||| |||||||||||| |
|
|
| T |
4624 |
catgaaaagaggtttcaaaatgataagaataacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccat |
4529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 13685 - 13490
Alignment:
| Q |
1 |
ctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgag |
100 |
Q |
| |
|
||||| |||||| |||||| || ||||||||||||||||||||||||| ||| || ||||||||||||||| |||| |||| ||| |||||||||||| |
|
|
| T |
13685 |
ctacaagacaaaaggtcgcctcgttttgcctgttttctttggtgtggatcctactaatgtgcgacatcatacaggtcgttatggtgaagcattggctgga |
13586 |
T |
|
| Q |
101 |
catnnnnnnnggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccat |
196 |
Q |
| |
|
||| |||||||||||||| || ||||||| || | ||||| |||||||| ||||||||| ||| ||||||||||| |||||||||||| |
|
|
| T |
13585 |
catgaaaagaggtttcaaaatgataagaataacatggagcgattgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccat |
13490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0419 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: scaffold0419
Description:
Target: scaffold0419; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 7659 - 7854
Alignment:
| Q |
1 |
ctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgag |
100 |
Q |
| |
|
||||| |||| | |||||| || ||||||||||||||||||||||||| ||| || ||||||||||||||| |||| |||| ||| |||||||||||| |
|
|
| T |
7659 |
ctacaagacagaaggtcgcctcgttttgcctgttttctttggtgtggatcctactaatgtgcgacatcatacaggtcgttatggtgaagcattggctgga |
7758 |
T |
|
| Q |
101 |
catnnnnnnnggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccat |
196 |
Q |
| |
|
||| |||||||||||||| || ||||||| || | ||||| |||||||| ||||||||| ||| ||||||||||| |||||||||||| |
|
|
| T |
7759 |
catgaaaagaggtttcaaaatgataagaataacatggagcgattgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccat |
7854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 28127719 - 28127639
Alignment:
| Q |
1 |
ctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagtta |
81 |
Q |
| |
|
||||| ||||||||||||| | ||||||||||||||||||| ||||| ||| || |||||||| |||||| ||| ||||| |
|
|
| T |
28127719 |
ctacaagacaaagggtcgcctagttttgcctgttttctttggcgtggatcctactgatgtgcgatatcatacagggagtta |
28127639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 28164402 - 28164323
Alignment:
| Q |
1 |
ctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagtta |
81 |
Q |
| |
|
||||| ||||||||||||| | |||||||||||||| |||| ||||| ||| || ||||||||||||||| ||| ||||| |
|
|
| T |
28164402 |
ctacaagacaaagggtcgcctagttttgcctgttttc-ttggcgtggatcctactgatgtgcgacatcatacagggagtta |
28164323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 27605 - 27672
Alignment:
| Q |
24 |
ttttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagca |
91 |
Q |
| |
|
||||||| |||||| || ||||||||||||||||||||||||||| || || ||||| ||||||||| |
|
|
| T |
27605 |
ttttgccaattttctatgatgtggaaccttctcatgtgcgacatcacaagggcagttatggtaaagca |
27672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 165
Target Start/End: Original strand, 34882 - 35023
Alignment:
| Q |
24 |
ttttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggtttcaaaatga |
123 |
Q |
| |
|
||||||| |||||| || ||||||||||||||| ||||||||||| || || ||||| ||||||||| ||| ||| ||| ||| |||||| | |
|
|
| T |
34882 |
ttttgccaattttctatgatgtggaaccttctcacgtgcgacatcacaagggcagttatggtaaagcactggatgatcatataaagaagttccaaaataa |
34981 |
T |
|
| Q |
124 |
tgaggataacataaagaggttgcagcaatggaaagtggctct |
165 |
Q |
| |
|
|||||||||| ||||||||||| ||||||| ||||||| |
|
|
| T |
34982 |
caaggataacatggagaggttgcagaaatggaagatggctct |
35023 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 103
Target Start/End: Original strand, 116972 - 117032
Alignment:
| Q |
43 |
tgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcat |
103 |
Q |
| |
|
||||||||||||||| ||||||||||| || || ||||| ||||||||| |||| |||||| |
|
|
| T |
116972 |
tgtggaaccttctcacgtgcgacatcacaagggcagttatggtaaagcactggccgagcat |
117032 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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