View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6435_low_1 (Length: 412)
Name: NF6435_low_1
Description: NF6435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6435_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 17 - 398
Target Start/End: Complemental strand, 27257707 - 27257326
Alignment:
| Q |
17 |
aagttgtttgtgtttaagtgctccactagaactcttgaaaacaaaggctttccatgtacgaacacatcaacgacatggattaattctgttgtaggaggat |
116 |
Q |
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| T |
27257707 |
aagttgtttgtgtttaagtgttcaactagaactcttgaaaacaaaggctttccatgtacgaacacatcaacgacatggattaattctgttgtaggaggat |
27257608 |
T |
|
| Q |
117 |
agaaacggtaagaattattatttttatggttgtgaagggaagggaaggcgtccaagaagaaggaatggtaacctccagggaaagtggagataacgttgtg |
216 |
Q |
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| T |
27257607 |
agaaacggtaagaattattatttttatggttgtgaagggaagggaaggcgtccgagaagaaggaacggtaacctccagggaaagtagagataacgttgtg |
27257508 |
T |
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| Q |
217 |
aacgataggatccaacagcaaagaaggccactttgaggtgcatatgttccgccatagatcttcgttgttgtggcaaatcatgtgacggagttctgaacac |
316 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
27257507 |
aacgataggatccaacagcaaagaaggccacgttgaggtgcatatgttccgccatagatcttcgttgctgtggcaaatcatgtgacgaagttctgaacac |
27257408 |
T |
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| Q |
317 |
acagaggataagacggttaaggttgtgccgtcgagacggggaaggatgtaggtatgaatgatgtctgtatctaacctactga |
398 |
Q |
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| T |
27257407 |
acagaggataagacggttaaggttgtgccgtcgagacggggaaggatgtgggtatgaatgatgtctgtatctaacctactga |
27257326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 152 - 398
Target Start/End: Complemental strand, 27240970 - 27240724
Alignment:
| Q |
152 |
agggaagggaaggcgtccaagaagaaggaatggtaacctccagggaaagtggagataacgttgtgaacgataggatccaacagcaaagaaggccactttg |
251 |
Q |
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| T |
27240970 |
agggaagggaatgcgtcggagaaaaaggaacggtaaccaccagggaaagtggagatgacgttgtgaacaataggatccttcagtaaagaaggccactttg |
27240871 |
T |
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| Q |
252 |
aggtgcatatgttccgccatagatcttcgttgttgtggcaaatcatgtgacggagttctgaacacacagaggataagacggttaaggttgtgccgtcgag |
351 |
Q |
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| T |
27240870 |
aggtgcatatgttccgccatagatcttcgttgttgtggcaaatcatgtgacggagttctgaacatacagagaataagacgattaaggttgtgccgtcgag |
27240771 |
T |
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| Q |
352 |
acggggaaggatgtaggtatgaatgatgtctgtatctaacctactga |
398 |
Q |
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| T |
27240770 |
gcggggaaggatgtgggtatgcatgatgtctggatctaacctactga |
27240724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 171 - 365
Target Start/End: Complemental strand, 27246480 - 27246289
Alignment:
| Q |
171 |
agaagaaggaatggtaacctccagggaaagtggagataacgttgtgaacgataggatccaacagcaaagaaggccactttgaggtgcatatgttccgcca |
270 |
Q |
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| T |
27246480 |
agaagaaggaatggtaaccaccagggaaagtggagatgacgttgttagctatgggatccaatagcaaagaaggccatgttgaggtgcatatgttccgcca |
27246381 |
T |
|
| Q |
271 |
tagatcttcgttgttgtggcaaatcatgtgacggagttctgaacacacagaggataagacggttaaggttgtgccgtcgagacggggaaggatgt |
365 |
Q |
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| T |
27246380 |
taaatct---ttgtcgttgcagatcatgtggcggagttctgaagatacggaggagaaggcggttaaggttgttccatcgaggcggggcaggatgt |
27246289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 171 - 365
Target Start/End: Complemental strand, 27253260 - 27253069
Alignment:
| Q |
171 |
agaagaaggaatggtaacctccagggaaagtggagataacgttgtgaacgataggatccaacagcaaagaaggccactttgaggtgcatatgttccgcca |
270 |
Q |
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| T |
27253260 |
agaagaaggaacggtaaccaccgggaaaagtggagatgacgttgttagctatgggatccaatagcaaagaaggccatgttgaagtgcatatgttccgcca |
27253161 |
T |
|
| Q |
271 |
tagatcttcgttgttgtggcaaatcatgtgacggagttctgaacacacagaggataagacggttaaggttgtgccgtcgagacggggaaggatgt |
365 |
Q |
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||||||||||||||| ||| |||||||| |||||||||||| | ||| ||||||| | ||||||||||||||| ||||| ||||| ||||||| |
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| T |
27253160 |
tagatcttcgttgtt---gcagatcatgtggcggagttctgaagatacacaggataatatggttaaggttgtgccatcgaggcggggcaggatgt |
27253069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 148 - 403
Target Start/End: Original strand, 7501997 - 7502251
Alignment:
| Q |
148 |
gtgaagggaagggaaggcgtccaagaagaaggaatggtaacctccagggaaagtggagataacgttgtgaacgataggatccaacagcaaagaaggccac |
247 |
Q |
| |
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||||||||||||||| || || ||||||| ||| |||||| || |||||||||||||| || | || |||||| ||||||| || ||||||||| |
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| T |
7501997 |
gtgaagggaagggaacgcatcggagaagaatgaactgtaaccaccggggaaagtggagatgacatcgttaacgattggatccataagg---gaaggccac |
7502093 |
T |
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| Q |
248 |
tttgaggtgcatatgttccgccatagatcttcgttgttgtggcaaatcatgtgacggagttctgaacacacagaggataagacggttaa--ggttgtgcc |
345 |
Q |
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||||||||||| || ||||||||||||| | |||||||| ||| |||| ||| |||||||||| | |||| | |||||| ||||||| |||||| |
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| T |
7502094 |
tttgaggtgcaaatattccgccatagattgttgttgttgttgcagatcaggtggcggagttctggagacacggtcgataaggcggttaaatcagtgtgcc |
7502193 |
T |
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| Q |
346 |
gtcgagacggggaaggatgtaggtatgaatgatgtctgtatctaacctactgatgatg |
403 |
Q |
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|||||| || |||||||||| | | | ||||||||||| |||||||||||||| |||| |
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| T |
7502194 |
gtcgaggcgtggaaggatgtggctgttaatgatgtctgaatctaacctactgaagatg |
7502251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 398
Target Start/End: Original strand, 7500564 - 7500808
Alignment:
| Q |
148 |
gtgaagggaagggaaggcgtccaagaagaaggaatggtaacctccagggaaagtggagataacgttgtgaacgataggatccaacagcaaagaaggccac |
247 |
Q |
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||||| |||||| || ||||| ||||||||||| ||||||| ||||||||||||| ||||| || | |||| | |||| ||| | |||||||| |
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| T |
7500564 |
gtgaatggaaggaaacgcgtcggagaagaaggaacggtaaccaccagggaaagtggtgataatgtggctaacggttggat---gcagaaggcaaggccac |
7500660 |
T |
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| Q |
248 |
tttgaggtgcatatgttccgccatagatcttcgttgttgtggcaaatcatgtgacggagttctgaacacacagaggataagacggttaaggttgtgccgt |
347 |
Q |
| |
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| T |
7500661 |
atggaggtgcaaatgttccgccataattcctcgttgtt---gcagatcaagtggcgaaggtcggaacatacacaggacaatgccattaaggctgccccat |
7500757 |
T |
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| Q |
348 |
cgagacggggaaggatgtaggtatgaatgatgtctgtatctaacctactga |
398 |
Q |
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| T |
7500758 |
cgaggcgtggaaggatataggtctggatgatgtctggatctaacctactga |
7500808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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