View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6435_low_2 (Length: 405)
Name: NF6435_low_2
Description: NF6435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6435_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 17 - 390
Target Start/End: Complemental strand, 52476933 - 52476560
Alignment:
| Q |
17 |
agcaaaggtgattctaagaaacgagggagggaaattctcaaagaagtacataaagtcaatctccaagctcttgggtcccgatagcttgctatgtgcagct |
116 |
Q |
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| T |
52476933 |
agcaaaggtgattctaagaaacgagggagggaaattctcaaagaagtacataaagtcaatctccaagctcttgggtcccgatagcttgctatgtgcagct |
52476834 |
T |
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| Q |
117 |
gagcatcatcacaaactcattcgtagccgtctcttgagtttgttctcgcctcattctttgccttcctttgttcaactgtttgatgaacttgtaactgaag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52476833 |
gagcatcatcacaaactcattcgtagccgtctcttgagtttgttctcgcctcattctttgccttcctttgttcaactgtttgatgaacttgtaactgaag |
52476734 |
T |
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| Q |
217 |
ctacaagtacctggacatgtggatcccttgtcatcatacaagatgaagcactcaaggtacatgttatattcccttcgtccacaataactatatatcttga |
316 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52476733 |
ctacaggtacctggacatgtggatcccttgtcatcatacaagatgaagcactcaaggtacatgttatattcccttcgtccacaataactatatatcttga |
52476634 |
T |
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| Q |
317 |
tcgaccatttcacacattgatctattttcattgtcattaatgcacatactattgattaggtggtacgagtaaaa |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
52476633 |
tcgaccatttcacacattgatctattttcattgtcattaatgcacatactattgattaggtgctacgagtaaaa |
52476560 |
T |
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