View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6435_low_3 (Length: 341)

Name: NF6435_low_3
Description: NF6435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6435_low_3
NF6435_low_3
[»] chr1 (2 HSPs)
chr1 (1-333)||(1050061-1050392)
chr1 (1-62)||(37282498-37282559)
[»] chr8 (2 HSPs)
chr8 (7-65)||(32901986-32902044)
chr8 (1-62)||(11711805-11711866)
[»] chr2 (1 HSPs)
chr2 (7-62)||(28672173-28672228)
[»] chr7 (2 HSPs)
chr7 (168-218)||(11680372-11680422)
chr7 (181-221)||(31453444-31453484)
[»] chr4 (1 HSPs)
chr4 (8-62)||(21703693-21703747)
[»] chr3 (2 HSPs)
chr3 (9-62)||(27305519-27305572)
chr3 (9-63)||(51399127-51399183)
[»] chr5 (1 HSPs)
chr5 (30-62)||(16649635-16649667)


Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 1050392 - 1050061
Alignment:
Q  1 actttccttttgcttcatacatcttagtttattggtatgattttgagttcaaattcacaacaaaacattatat---tattgatattttttgtgttaacat 97  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||   ||||||||||||||||||||||      
T  1050392 actttccttttacttcatacatcttagtttattggtgtgattttgagttcaaattcacaacaaaacatactataagtattgatattttttgtgttaac-- 1050295  T
Q  98 aaccctctagttttttgagaattggattttagtaatacggaattcattcgtaagataaatataatcttacaaaaattattccacccaaaaatcaaattca 197  Q
       ||||| |||||||||||| |||||||| |||||||||| |||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||    
T  1050294 ---cctctggttttttgagaactggattttggtaatacggagttcattcgtaaggtaaatataatctgacaaaaattattccatccaaaaatcaaattca 1050198  T
Q  198 aattcttttcaataattcgtcttttgata----tcattaacttcttaaactcattcacttgattattattgtagtattgattttgtgttcgatggctatc 293  Q
    ||||||||||||||||||||| |||||||    ||||||||||||||||||||||||||||   ||||| ||||||||||||||||||||||||||||||    
T  1050197 aattcttttcaataattcgtcatttgataaaattcattaacttcttaaactcattcacttg---attatagtagtattgattttgtgttcgatggctatc 1050101  T
Q  294 atcatttggatataatattaattagttgttggtctctgct 333  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  1050100 atcatttggatataatattaattagttgttggtgtctgct 1050061  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 37282559 - 37282498
Alignment:
Q  1 actttccttttgcttcatacatcttagtttattggtatgattttgagttcaaattcacaaca 62  Q
    ||||| |||||||| || |||| | ||||||||||| ||||||||||| | |||||||||||    
T  37282559 acttttcttttgctccacacatttaagtttattggtgtgattttgagtccgaattcacaaca 37282498  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 32902044 - 32901986
Alignment:
Q  7 cttttgcttcatacatcttagtttattggtatgattttgagttcaaattcacaacaaaa 65  Q
    |||||||| || |||||| ||||||||||| ||||||||||| | ||||||||||||||    
T  32902044 cttttgctccacacatctaagtttattggtctgattttgagtccgaattcacaacaaaa 32901986  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 11711866 - 11711805
Alignment:
Q  1 actttccttttgcttcatacatcttagtttattggtatgattttgagttcaaattcacaaca 62  Q
    |||||||||||||| || |||||| ||||||||||| | ||||||||| | |||||||||||    
T  11711866 actttccttttgctccacacatctaagtttattggtgtaattttgagtccgaattcacaaca 11711805  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 28672173 - 28672228
Alignment:
Q  7 cttttgcttcatacatcttagtttattggtatgattttgagttcaaattcacaaca 62  Q
    ||||| || ||||||||| ||||||||||| ||||||||||| | |||||||||||    
T  28672173 cttttactccatacatctaagtttattggtgtgattttgagtacgaattcacaaca 28672228  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 11680372 - 11680422
Alignment:
Q  168 aaaaattattccacccaaaaatcaaattcaaattcttttcaataattcgtc 218  Q
    ||||||||||||||| ||||||| || |||||||| ||| |||||||||||    
T  11680372 aaaaattattccacctaaaaatcgaactcaaattcctttgaataattcgtc 11680422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 31453484 - 31453444
Alignment:
Q  181 cccaaaaatcaaattcaaattcttttcaataattcgtcttt 221  Q
    ||||||||||||| |||||||||||| |||||||| |||||    
T  31453484 cccaaaaatcaaactcaaattcttttgaataattcatcttt 31453444  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 21703747 - 21703693
Alignment:
Q  8 ttttgcttcatacatcttagtttattggtatgattttgagttcaaattcacaaca 62  Q
    ||||||| || |||||| ||||||||| | ||||||||||||| |||||||||||    
T  21703747 ttttgctccacacatctaagtttattgctgtgattttgagttcgaattcacaaca 21703693  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 27305572 - 27305519
Alignment:
Q  9 tttgcttcatacatcttagtttattggtatgattttgagttcaaattcacaaca 62  Q
    |||||| || ||||| |||||||||||| ||||||||||| | |||||||||||    
T  27305572 tttgctccacacatcatagtttattggtgtgattttgagtccgaattcacaaca 27305519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 51399127 - 51399183
Alignment:
Q  9 tttgcttcatacatcttagttt--attggtatgattttgagttcaaattcacaacaa 63  Q
    |||||| |||||||| ||||||  |||||||||||||||||| | ||||||||||||    
T  51399127 tttgctccatacatcatagtttgtattggtatgattttgagtccgaattcacaacaa 51399183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 16649667 - 16649635
Alignment:
Q  30 tattggtatgattttgagttcaaattcacaaca 62  Q
    ||||||||||||||||||||| |||||||||||    
T  16649667 tattggtatgattttgagttcgaattcacaaca 16649635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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