View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6435_low_6 (Length: 217)

Name: NF6435_low_6
Description: NF6435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6435_low_6
NF6435_low_6
[»] chr6 (24 HSPs)
chr6 (1-202)||(27604557-27604758)
chr6 (1-202)||(27718231-27718432)
chr6 (1-202)||(27610854-27611055)
chr6 (1-202)||(27592872-27593073)
chr6 (7-202)||(26802582-26802777)
chr6 (7-202)||(27698346-27698541)
chr6 (1-202)||(27677466-27677667)
chr6 (1-202)||(27679080-27679281)
chr6 (1-202)||(27706254-27706455)
chr6 (11-199)||(27427461-27427649)
chr6 (1-196)||(28786412-28786607)
chr6 (1-196)||(28792533-28792728)
chr6 (7-196)||(26884305-26884494)
chr6 (1-196)||(28781273-28781468)
chr6 (10-196)||(26861756-26861942)
chr6 (1-103)||(27724796-27724898)
chr6 (24-183)||(27531068-27531227)
chr6 (14-103)||(31284435-31284524)
chr6 (24-91)||(28227107-28227174)
chr6 (24-165)||(28234720-28234861)
chr6 (43-103)||(28325657-28325717)
chr6 (24-91)||(28181271-28181338)
chr6 (11-69)||(29826171-29826229)
chr6 (32-69)||(26811674-26811711)
[»] scaffold0349 (2 HSPs)
scaffold0349 (1-202)||(3272-3474)
scaffold0349 (1-202)||(14208-14409)
[»] scaffold0003 (1 HSPs)
scaffold0003 (11-199)||(59714-59902)
[»] chr4 (3 HSPs)
chr4 (11-199)||(18073906-18074094)
chr4 (24-103)||(5090905-5090984)
chr4 (31-78)||(17989019-17989065)
[»] scaffold0277 (2 HSPs)
scaffold0277 (1-196)||(4529-4724)
scaffold0277 (1-196)||(13490-13685)
[»] scaffold0419 (1 HSPs)
scaffold0419 (1-196)||(7659-7854)
[»] chr1 (2 HSPs)
chr1 (1-81)||(28127639-28127719)
chr1 (1-81)||(28164323-28164402)
[»] scaffold0038 (3 HSPs)
scaffold0038 (24-91)||(27605-27672)
scaffold0038 (24-165)||(34882-35023)
scaffold0038 (43-103)||(116972-117032)


Alignment Details
Target: chr6 (Bit Score: 169; Significance: 8e-91; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 27604758 - 27604557
Alignment:
Q  1 ctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgag 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  27604758 ctacacgacaaagggtcgcgtcgttttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtcaagcattggctgag 27604659  T
Q  101 catnnnnnnnggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgata 200  Q
    |||       ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27604658 cataaaaaaaggtttcaaaatgatgaggataacataaagaggttgcagcgatggaaagtggctctgagccaggctgctaacttttccggctaccatgata 27604559  T
Q  201 gt 202  Q
    ||    
T  27604558 gt 27604557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 27718432 - 27718231
Alignment:
Q  1 ctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgag 100  Q
    ||||| ||||||||||||| || |||||||||||||||| || ||||||||| || | ||||||||||| ||||||||||| ||| ||||||||||||||    
T  27718432 ctacaagacaaagggtcgcctcgttttgcctgttttcttcggcgtggaacctactaacgtgcgacatcagaaaggtagttatggtgaagcattggctgag 27718333  T
Q  101 catnnnnnnnggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgata 200  Q
    |||       |||||||||||||| || |||||||  |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27718332 catgaaaagaggtttcaaaatgataagaataacatggagaggttgcagcgatggaaagtggctctgagccaggctgctaacttgtccggctaccatgata 27718233  T
Q  201 gt 202  Q
    ||    
T  27718232 gt 27718231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 27611055 - 27610854
Alignment:
Q  1 ctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgag 100  Q
    ||||| ||||||||||||| || |||||||||||||||| || ||||||||| || | ||||||||||| ||||||||||| ||| ||||||||||||||    
T  27611055 ctacaagacaaagggtcgcctcgttttgcctgttttcttcggcgtggaacctactaaagtgcgacatcagaaaggtagttatggtgaagcattggctgag 27610956  T
Q  101 catnnnnnnnggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgata 200  Q
    |||       |||||||||||||| || |||||||  |||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  27610955 catgaaaagaggtttcaaaatgataagaataacatggagaggttgcagggatggaaagtggctctgagccaggctgcaaacttttccggctaccatgata 27610856  T
Q  201 gt 202  Q
    ||    
T  27610855 gt 27610854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 27593073 - 27592872
Alignment:
Q  1 ctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgag 100  Q
    ||||| |||||||||||||    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  27593073 ctacaagacaaagggtcgccctgttttgcctgttttctttggtgtggatccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctgag 27592974  T
Q  101 catnnnnnnnggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgata 200  Q
    |||       ||||||||||||||  | | |||||  |||||||||||  ||||||||  ||||||||||||||||||||||| ||||||||||||||||    
T  27592973 catgaaaagaggtttcaaaatgatccgaaaaacatggagaggttgcagggatggaaagacgctctgagccaggctgctaacttgtccggctaccatgata 27592874  T
Q  201 gt 202  Q
    ||    
T  27592873 gt 27592872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 7 - 202
Target Start/End: Original strand, 26802582 - 26802777
Alignment:
Q  7 gacaaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnn 106  Q
    ||||||||||||| || | |||||| |||||||||||||||| ||| || ||||||| ||||||| | |||| || ||| |||||||||||||||||       
T  26802582 gacaaagggtcgcctcgtcttgcctattttctttggtgtggatcctactaatgtgcgccatcatacatgtagctatggtgaagcattggctgagcatgaa 26802681  T
Q  107 nnnnggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagt 202  Q
        |||||||||||||| ||||||||||  |||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26802682 aaaaggtttcaaaatgataaggataacatggagaggttggagcgatggaaagtggctctgagccaggctgctaacttgtccggctaccatgatagt 26802777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 7 - 202
Target Start/End: Complemental strand, 27698541 - 27698346
Alignment:
Q  7 gacaaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnn 106  Q
    ||||||||||||| || |||||||||||||||| |||||||||||  || ||||| ||||||||||||||||||| || ||||||||||||||||||       
T  27698541 gacaaagggtcgcctcgttttgcctgttttcttcggtgtggaaccaactaatgtgagacatcataaaggtagttatggcaaagcattggctgagcatgaa 27698442  T
Q  107 nnnnggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagt 202  Q
        ||||||||||||||  | | |||||  |||||||||||  |||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  27698441 aagaggtttcaaaatgatccgaaaaacatggagaggttgcagggatggaaagaggctctgagccaggctgctaacttgtccggctaccatgatagt 27698346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 27677667 - 27677466
Alignment:
Q  1 ctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgag 100  Q
    ||||| ||||||||||||| || || ||||||||||||||| |||||||||| ||  |||||||||||| ||||||||||| ||| ||||||||||||||    
T  27677667 ctacaagacaaagggtcgcctcgttctgcctgttttctttgctgtggaacctactattgtgcgacatcagaaaggtagttatggtgaagcattggctgag 27677568  T
Q  101 catnnnnnnnggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgata 200  Q
    |||       ||||||||||||||  | | | |||  |||||||||||  |||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  27677567 catgaaaagaggtttcaaaatgatccgaaaagcatggagaggttgcagggatggaaagaggctctgagccaggctgctaacttgtccggctaccatgata 27677468  T
Q  201 gt 202  Q
    ||    
T  27677467 gt 27677466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 27679080 - 27679281
Alignment:
Q  1 ctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgag 100  Q
    ||||| ||||||||||||| || || |||||||||||||||||||||||||| ||  ||||||||||| |||||||||||| ||| ||||||||||||||    
T  27679080 ctacaagacaaagggtcgcctcgttctgcctgttttctttggtgtggaacctactgttgtgcgacatcgtaaaggtagttatggtgaagcattggctgag 27679179  T
Q  101 catnnnnnnnggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgata 200  Q
    |||       ||||||||||||||  | | |||||  ||||||||||   |||||||  |||||||||||||||||||||||| ||||||||||||||||    
T  27679180 catgaaaagaggtttcaaaatgatccgaaaaacatggagaggttgcaaggatggaaaaaggctctgagccaggctgctaacttgtccggctaccatgata 27679279  T
Q  201 gt 202  Q
    ||    
T  27679280 gt 27679281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 27706455 - 27706254
Alignment:
Q  1 ctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgag 100  Q
    ||||| ||||||||||||| || || |||||||||| |||||||| |||||| ||  ||||||||||| |||||||||||| ||| ||||||||||||||    
T  27706455 ctacaagacaaagggtcgcctcgttctgcctgttttatttggtgtagaacctactattgtgcgacatcgtaaaggtagttatggtgaagcattggctgag 27706356  T
Q  101 catnnnnnnnggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgata 200  Q
    |||       ||||||||||||||  | | |||||  |||||||||||  |||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  27706355 catgaaaagaggtttcaaaatgatccgaaaaacatggagaggttgcagggatggaaagaggctctgagccaggctgctaacttgtccggctaccatgata 27706256  T
Q  201 gt 202  Q
    ||    
T  27706255 gt 27706254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 11 - 199
Target Start/End: Complemental strand, 27427649 - 27427461
Alignment:
Q  11 aagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnn 110  Q
    |||||| || || ||||||||||||||||||||||||||||| || ||||||||||||||| |||||| || |||||||||||||||||||||           
T  27427649 aagggttgcctcgttttgcctgttttctttggtgtggaacctactgatgtgcgacatcatacaggtaggtatggtaaagcattggctgagcatgaaaata 27427550  T
Q  111 ggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgat 199  Q
    ||||||||||||||  | | |||||  ||||||||||||||||||||||||||||||| | ||||||||||||  || |||||||||||    
T  27427549 ggtttcaaaatgatacgaaaaacatggagaggttgcagcaatggaaagtggctctgagtctggctgctaacttgcccagctaccatgat 27427461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 28786412 - 28786607
Alignment:
Q  1 ctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgag 100  Q
    ||||| |||||| |||||| || |||||||||||||||||||||| || ||| || ||||||||||||||| |||| |||| ||| |||||||||||| |    
T  28786412 ctacaagacaaaaggtcgcctcgttttgcctgttttctttggtgtcgatcctactaatgtgcgacatcatacaggtcgttatggtgaagcattggctggg 28786511  T
Q  101 catnnnnnnnggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccat 196  Q
    |||       |||||||||||||| ||||||||||  |||||||||| ||||||||  ||||||||| ||| ||||||||||| ||||||||||||    
T  28786512 catgaaaagaggtttcaaaatgataaggataacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccat 28786607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 28792533 - 28792728
Alignment:
Q  1 ctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgag 100  Q
    ||||| |||||| |||||| || |||||||||||||||||||||| || ||| || ||||||||||||||| |||| |||| ||| |||||||||||| |    
T  28792533 ctacaagacaaaaggtcgcctcgttttgcctgttttctttggtgtcgatcctactaatgtgcgacatcatacaggtcgttatggtgaagcattggctggg 28792632  T
Q  101 catnnnnnnnggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccat 196  Q
    |||       |||||||||||||| ||||||||||  |||||||||| ||||||||  ||||||||| ||| ||||||||||| ||||||||||||    
T  28792633 catgaaaagaggtttcaaaatgataaggataacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccat 28792728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 196
Target Start/End: Original strand, 26884305 - 26884494
Alignment:
Q  7 gacaaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnn 106  Q
    ||||||||||||| || |||||||||||||  |||||||||| ||| || ||||||||||||||| ||||||||| ||| ||||||||||||| |||       
T  26884305 gacaaagggtcgcctcgttttgcctgtttttgttggtgtggatcctactgatgtgcgacatcatacaggtagttatggtgaagcattggctgaccatgaa 26884404  T
Q  107 nnnnggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccat 196  Q
        |||||||||||||| ||||||||||  |||||||||||| ||||||| ||||| |||| || | ||||||||| ||||||||||||    
T  26884405 aaaaggtttcaaaatgataaggataacatggagaggttgcagcgatggaaaatggctatgaggcaagttgctaacttgtccggctaccat 26884494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 28781273 - 28781468
Alignment:
Q  1 ctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgag 100  Q
    ||||| |||||| |||||| || ||||||||||||||||||||||||| ||| || ||||||||||||||| ||||  ||| ||| ||||||||||||      
T  28781273 ctacaagacaaaaggtcgcctcgttttgcctgttttctttggtgtggatcctactaatgtgcgacatcatacaggtccttatggtgaagcattggctgga 28781372  T
Q  101 catnnnnnnnggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccat 196  Q
    |||       |||||||||||||| ||||||||||  |||||||||| ||||||||  ||||||||| ||| ||||||||||| ||||||||||||    
T  28781373 catgaaaagaggtttcaaaatgataaggataacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccat 28781468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 10 - 196
Target Start/End: Original strand, 26861756 - 26861942
Alignment:
Q  10 aaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnn 109  Q
    ||||||||||||| ||||||||||||||| |||  |||| ||| || ||||||||||||||| ||||| ||| ||| ||||||||||| |||||          
T  26861756 aaagggtcgcgtcgttttgcctgttttctatggcatggatcctactaatgtgcgacatcatagaggtatttatggtgaagcattggctaagcatgaaaaa 26861855  T
Q  110 nggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccat 196  Q
     ||||||||||||||  |||||||||  |||||||||||  ||||||||| ||||||| ||| ||||||||||| || |||||||||    
T  26861856 aggtttcaaaatgatatggataacatggagaggttgcagagatggaaagttgctctgaaccaagctgctaacttgtcaggctaccat 26861942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 27724898 - 27724796
Alignment:
Q  1 ctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgag 100  Q
    ||||| ||||||||||||| || |||||||||||||||| || ||||||||| || | ||||||||||| ||||||||||| ||| ||||||||||||||    
T  27724898 ctacaagacaaagggtcgcctcgttttgcctgttttcttcggcgtggaacctactaacgtgcgacatcagaaaggtagttatggtgaagcattggctgag 27724799  T
Q  101 cat 103  Q
    |||    
T  27724798 cat 27724796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 24 - 183
Target Start/End: Complemental strand, 27531227 - 27531068
Alignment:
Q  24 ttttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggtttcaaaatga 123  Q
    |||||||||||||  |||||||||| ||| || ||||||||||||| | |||||| || ||| ||||||| |||| ||||        ||||||||||||    
T  27531227 ttttgcctgtttttattggtgtggatcctactgatgtgcgacatcacacaggtagatatggtgaagcattagctgtgcataaaaaaaagtttcaaaatga 27531128  T
Q  124 tgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaactt 183  Q
    | |||||||||   |||||||||||||||||||||  ||||||||||| || ||||||||    
T  27531127 taaggataacactgagaggttgcagcaatggaaagaagctctgagccaagcggctaactt 27531068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 31284435 - 31284524
Alignment:
Q  14 ggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcat 103  Q
    |||||| || ||||||| ||||||||||| ||||| |||||||||||||||||||||| ||||||||| ||  ||||||||||| |||||    
T  31284435 ggtcgcctcgttttgcccgttttctttggcgtggatccttctcatgtgcgacatcatagaggtagttatggagaagcattggctaagcat 31284524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 28227107 - 28227174
Alignment:
Q  24 ttttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagca 91  Q
    |||||||  |||||| || ||||||||||||||||||||||||||| || || ||||| |||||||||    
T  28227107 ttttgccaattttctatgatgtggaaccttctcatgtgcgacatcacaagggcagttatggtaaagca 28227174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 165
Target Start/End: Original strand, 28234720 - 28234861
Alignment:
Q  24 ttttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggtttcaaaatga 123  Q
    |||||||  |||||| || ||||||||||||||| ||||||||||| || || ||||| ||||||||| ||| ||| |||        ||| |||||| |    
T  28234720 ttttgccaattttctatgatgtggaaccttctcacgtgcgacatcacaagggcagttatggtaaagcactggatgatcatataaagaagttccaaaataa 28234819  T
Q  124 tgaggataacataaagaggttgcagcaatggaaagtggctct 165  Q
      ||||||||||  ||||||||||| |||||||  |||||||    
T  28234820 caaggataacatggagaggttgcagaaatggaagatggctct 28234861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 103
Target Start/End: Original strand, 28325657 - 28325717
Alignment:
Q  43 tgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcat 103  Q
    ||||||||||||||| ||||||||||| || || ||||| ||||||||| |||| ||||||    
T  28325657 tgtggaaccttctcacgtgcgacatcacaagggcagttatggtaaagcactggccgagcat 28325717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 28181271 - 28181338
Alignment:
Q  24 ttttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagca 91  Q
    |||||||  |||||| || ||||||||||||||| ||||||||||| || || ||||| |||||||||    
T  28181271 ttttgccaattttctatgatgtggaaccttctcacgtgcgacatcacaagggcagttatggtaaagca 28181338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 29826171 - 29826229
Alignment:
Q  11 aagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatca 69  Q
    ||||||||  || |||||||| |||||| || |||||| ||||||||||||||||||||    
T  29826171 aagggtcgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgacatca 29826229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 26811674 - 26811711
Alignment:
Q  32 gttttctttggtgtggaaccttctcatgtgcgacatca 69  Q
    ||||||| |||||||||||||||||| |||||||||||    
T  26811674 gttttctatggtgtggaaccttctcacgtgcgacatca 26811711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 3474 - 3272
Alignment:
Q  1 ctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgag 100  Q
    ||||| ||||||||||||| || || |||||||||| ||||||||||||||| ||  ||||||||||| |||||||||||| ||| ||||||||||||||    
T  3474 ctacaagacaaagggtcgcctcgttctgcctgttttatttggtgtggaacctactattgtgcgacatcgtaaaggtagttatggtgaagcattggctgag 3375  T
Q  101 catnnnnnnnggtttcaaaatgatgag-gataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgat 199  Q
    |||       ||||||||||||||  |  | |||||  |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3374 catgaaaagaggtttcaaaatgatccgaaaaaacatggagaggttgcagcgatggaaagtggctctgagccaggctgctaacttgtccggctaccatgat 3275  T
Q  200 agt 202  Q
    |||    
T  3274 agt 3272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 14409 - 14208
Alignment:
Q  1 ctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgag 100  Q
    ||||| ||||||||||||| || |||||||||||||||| || ||||||||| || | ||||||||||| ||||||||||| ||| ||||||||||||||    
T  14409 ctacaagacaaagggtcgcctcgttttgcctgttttcttcggcgtggaacctactaacgtgcgacatcagaaaggtagttatggtgaagcattggctgag 14310  T
Q  101 catnnnnnnnggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgata 200  Q
    |||       ||||||||||||||  | | |||||  |||||||||||  |||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  14309 catgaaaagaggtttcaaaatgatccgaaaaacatggagaggttgcagggatggaaagaggctctgagccaggctgctaacttgtccggctaccatgata 14210  T
Q  201 gt 202  Q
    ||    
T  14209 gt 14208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 92; Significance: 7e-45; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 11 - 199
Target Start/End: Original strand, 59714 - 59902
Alignment:
Q  11 aagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnn 110  Q
    |||||| || || ||||||||||||||||||||||||||||| || ||||||||||||||| |||||| || |||||||||||||||||||||           
T  59714 aagggttgcctcgttttgcctgttttctttggtgtggaacctactgatgtgcgacatcatacaggtaggtatggtaaagcattggctgagcatgaaaata 59813  T
Q  111 ggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgat 199  Q
    ||||||||||||||  | | |||||  ||||||||||||||||||||||||||||||| | ||||||||||||  || |||||||||||    
T  59814 ggtttcaaaatgatacgaaaaacatggagaggttgcagcaatggaaagtggctctgagtctggctgctaacttgcccagctaccatgat 59902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 7e-45; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 11 - 199
Target Start/End: Original strand, 18073906 - 18074094
Alignment:
Q  11 aagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnn 110  Q
    |||||| || || ||||||||||||||||||||||||||||| || ||||||||||||||| |||||| || |||||||||||||||||||||           
T  18073906 aagggttgcctcgttttgcctgttttctttggtgtggaacctactgatgtgcgacatcatacaggtaggtatggtaaagcattggctgagcatgaaaata 18074005  T
Q  111 ggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgat 199  Q
    ||||||||||||||  | | |||||  ||||||||||||||||||||||||||||||| | ||||||||||||  || |||||||||||    
T  18074006 ggtttcaaaatgatacgaaaaacatggagaggttgcagcaatggaaagtggctctgagtctggctgctaacttgcccagctaccatgat 18074094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 103
Target Start/End: Complemental strand, 5090984 - 5090905
Alignment:
Q  24 ttttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcat 103  Q
    |||||||| |||||| ||||||||||||||||||||||||| |||| |  || ||||| ||| ||||| | |||||||||    
T  5090984 ttttgcctattttctatggtgtggaaccttctcatgtgcgatatcagactggaagttatggtgaagcacttgctgagcat 5090905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 78
Target Start/End: Complemental strand, 17989065 - 17989019
Alignment:
Q  31 tgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtag 78  Q
    ||||||||||||||||||||| ||| ||||||||||||||| ||||||    
T  17989065 tgttttctttggtgtggaacc-tctgatgtgcgacatcatacaggtag 17989019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 4724 - 4529
Alignment:
Q  1 ctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgag 100  Q
    ||||| ||||||||||||| || |||||||||||||||| || ||||||||| || | ||||||||||  ||||||||||| ||| ||||||||||||||    
T  4724 ctacaagacaaagggtcgcctcgttttgcctgttttcttcggcgtggaacctactaacgtgcgacatctgaaaggtagttatggtgaagcattggctgag 4625  T
Q  101 catnnnnnnnggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccat 196  Q
    |||       |||||||||||||| || |||||||  |||||||||| ||||||||  ||||||||| ||| ||||||||||| ||||||||||||    
T  4624 catgaaaagaggtttcaaaatgataagaataacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccat 4529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 13685 - 13490
Alignment:
Q  1 ctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgag 100  Q
    ||||| |||||| |||||| || ||||||||||||||||||||||||| ||| || ||||||||||||||| |||| |||| ||| ||||||||||||      
T  13685 ctacaagacaaaaggtcgcctcgttttgcctgttttctttggtgtggatcctactaatgtgcgacatcatacaggtcgttatggtgaagcattggctgga 13586  T
Q  101 catnnnnnnnggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccat 196  Q
    |||       |||||||||||||| || |||||||  || | ||||| ||||||||  ||||||||| ||| ||||||||||| ||||||||||||    
T  13585 catgaaaagaggtttcaaaatgataagaataacatggagcgattgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccat 13490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 7659 - 7854
Alignment:
Q  1 ctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgag 100  Q
    ||||| |||| | |||||| || ||||||||||||||||||||||||| ||| || ||||||||||||||| |||| |||| ||| ||||||||||||      
T  7659 ctacaagacagaaggtcgcctcgttttgcctgttttctttggtgtggatcctactaatgtgcgacatcatacaggtcgttatggtgaagcattggctgga 7758  T
Q  101 catnnnnnnnggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccat 196  Q
    |||       |||||||||||||| || |||||||  || | ||||| ||||||||  ||||||||| ||| ||||||||||| ||||||||||||    
T  7759 catgaaaagaggtttcaaaatgataagaataacatggagcgattgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccat 7854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 28127719 - 28127639
Alignment:
Q  1 ctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagtta 81  Q
    ||||| ||||||||||||| |  ||||||||||||||||||| ||||| ||| || |||||||| |||||| ||| |||||    
T  28127719 ctacaagacaaagggtcgcctagttttgcctgttttctttggcgtggatcctactgatgtgcgatatcatacagggagtta 28127639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 28164402 - 28164323
Alignment:
Q  1 ctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagtta 81  Q
    ||||| ||||||||||||| |  |||||||||||||| |||| ||||| ||| || ||||||||||||||| ||| |||||    
T  28164402 ctacaagacaaagggtcgcctagttttgcctgttttc-ttggcgtggatcctactgatgtgcgacatcatacagggagtta 28164323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 27605 - 27672
Alignment:
Q  24 ttttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagca 91  Q
    |||||||  |||||| || ||||||||||||||||||||||||||| || || ||||| |||||||||    
T  27605 ttttgccaattttctatgatgtggaaccttctcatgtgcgacatcacaagggcagttatggtaaagca 27672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 165
Target Start/End: Original strand, 34882 - 35023
Alignment:
Q  24 ttttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggtttcaaaatga 123  Q
    |||||||  |||||| || ||||||||||||||| ||||||||||| || || ||||| ||||||||| ||| ||| |||        ||| |||||| |    
T  34882 ttttgccaattttctatgatgtggaaccttctcacgtgcgacatcacaagggcagttatggtaaagcactggatgatcatataaagaagttccaaaataa 34981  T
Q  124 tgaggataacataaagaggttgcagcaatggaaagtggctct 165  Q
      ||||||||||  ||||||||||| |||||||  |||||||    
T  34982 caaggataacatggagaggttgcagaaatggaagatggctct 35023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 103
Target Start/End: Original strand, 116972 - 117032
Alignment:
Q  43 tgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcat 103  Q
    ||||||||||||||| ||||||||||| || || ||||| ||||||||| |||| ||||||    
T  116972 tgtggaaccttctcacgtgcgacatcacaagggcagttatggtaaagcactggccgagcat 117032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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