View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6436_high_13 (Length: 250)
Name: NF6436_high_13
Description: NF6436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6436_high_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 8789975 - 8790194
Alignment:
| Q |
1 |
ttcttttacattcactattcatcacaaggtcttaaattacggttgcatcgcaatttgttagagtagaaaatccgattctaaaggattttgataaataaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8789975 |
ttcttttacattcactattcatcacaaggtcttaaattacggttgcatcgcaatttgttagagtagaaaatccgattctaaaggattttgataaataaaa |
8790074 |
T |
|
| Q |
101 |
acacaaggacacaacaattgatcacaaagttcggtcaattgtgactttgtctctgacaccagaatgactggtgtagttttctagtattatgcattgaatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8790075 |
acacaaggacacaacaattgatcacaaagttcggtcaattgtgactttgtctctgacaccagaatgactggtgtagttttctagtattatgcattgaatt |
8790174 |
T |
|
| Q |
201 |
agggtaacacagtacaaaac |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
8790175 |
agggtaacacagtacaaaac |
8790194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 183
Target Start/End: Original strand, 4918230 - 4918322
Alignment:
| Q |
91 |
ataaataaaaacacaaggacacaacaattgatcacaaagttcggtcaattgtgactttgtctctgacaccagaatgactggtgtagttttcta |
183 |
Q |
| |
|
||||| ||| ||||||| |||||||||||||||||| ||||||| |||||||| | | ||||||||| ||| ||||| |||||||||||| |
|
|
| T |
4918230 |
ataaaaaaacacacaagaacacaacaattgatcacagagttcggccaattgtgcatatatctctgacaatagatagactgttgtagttttcta |
4918322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University