View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6436_high_2 (Length: 708)
Name: NF6436_high_2
Description: NF6436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6436_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 144; Significance: 2e-75; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 35726129 - 35725954
Alignment:
| Q |
1 |
tgagacctagtggatccagatcatggtcaatttgtttattcatcactacctggtatgttttgcacaacnnnnnnnnaattcttagcaataattagtttgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
35726129 |
tgagacctagtggatccagatcatgggcaatttgtttattcatcactacctggtatgttttgcacaacttttttt-aattcttagcaataattagtttgc |
35726031 |
T |
|
| Q |
101 |
tttaaaatgttttttgttgatttcacttaaatgtgtatgtttggattgacggtgaatttggcaaaaccacagtggca |
177 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35726030 |
tttaaaatgttttttgttgatttcacttaaatgtgtatgtttggattgacggtgaatttggcaaaaccacagtggca |
35725954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 565 - 699
Target Start/End: Complemental strand, 35725949 - 35725815
Alignment:
| Q |
565 |
aattagtagttaaattaatagtgacaacaaaatattttgaggaacaaaacaagcagaaaggttacacgtcgaaatttgatgttttctcttgttatctagt |
664 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35725949 |
aattagtagttaaattaatagtgacaacaaaatattttgaggaacaaaacaagcagaaaggttacacgtcgaaatttgatgttttctcttgttatctagt |
35725850 |
T |
|
| Q |
665 |
cattattgatgtgtcatgtttgtgatgttgatgat |
699 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |
|
|
| T |
35725849 |
cattcttgatgtgtcatgtttgtgatgttgatgat |
35725815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 194
Target Start/End: Complemental strand, 46525741 - 46525680
Alignment:
| Q |
133 |
gtgtatgtttggattgacggtgaatttggcaaaaccacagtggcaccgtgattttgtgaagc |
194 |
Q |
| |
|
||||||||||||||| ||||| ||||| |||||| ||| || ||| ||||||||||||||| |
|
|
| T |
46525741 |
gtgtatgtttggattcacggttaatttagcaaaatcaccttgacactgtgattttgtgaagc |
46525680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 133 - 195
Target Start/End: Original strand, 16895318 - 16895380
Alignment:
| Q |
133 |
gtgtatgtttggattgacggtgaatttggcaaaaccacagtggcaccgtgattttgtgaagct |
195 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| ||||||| |||||| ||||||||| |
|
|
| T |
16895318 |
gtgtatgtttggattgatagtgaatttggcaaaaccactgtggcactgtgattctgtgaagct |
16895380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 10809504 - 10809560
Alignment:
| Q |
133 |
gtgtatgtttggattgacggtgaatttggcaaaaccacagtggcaccgtgattttgt |
189 |
Q |
| |
|
|||||||||| ||||| ||||| |||||||||| ||||| | |||||||||||||| |
|
|
| T |
10809504 |
gtgtatgtttagattggcggtgggtttggcaaaatcacagggacaccgtgattttgt |
10809560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University