View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6436_high_3 (Length: 541)
Name: NF6436_high_3
Description: NF6436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6436_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 476; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 19 - 531
Target Start/End: Original strand, 52422873 - 52423385
Alignment:
| Q |
19 |
agatttgactccttcaataatacaggaaagaaaaaacgttagttatcatttataatgcaagttacttatattgggagacactgcatgttcaattctaaat |
118 |
Q |
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| T |
52422873 |
agatttgactccttcaataatacaggaaagaaaaaacgttagttatcatttataaggcaagttacttatattgggagacactgcatattcaattctaaat |
52422972 |
T |
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| Q |
119 |
tacaacagaaatccaatattatgtgttcccacgagtgcttttgtttaaattcttaataatgcgaaaaattgggtcgaatttaatcaccaacctcttaggt |
218 |
Q |
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| T |
52422973 |
tacaacagaaatccaatattatgtgttcccacgagtgcttttgtttaaattcttaataatgcgaaaaattgggtcgaatttaatcaccaacctcttaggt |
52423072 |
T |
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| Q |
219 |
ctaataaccaatctattcaaatgcaagtttgtttcaagttttctatcatactgggtaggtctgagtagagcaacttcttccaattctttgaatagaagat |
318 |
Q |
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| T |
52423073 |
ctaataaccaatctattcaaatgcaagtttgtttcaagttttctatcatactgggtaggtctgagtagagcaacttcttccaattctgtgaatagaagat |
52423172 |
T |
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| Q |
319 |
gacaacataatcattgatcagttaaattattataaaattgatagagattagcatctattccagttccttagattacaagtttccaagtcagtgnnnnnnn |
418 |
Q |
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| T |
52423173 |
gacaacataatcattgatcatttaaattattataaaattgatagagattagcatctattccagttccttagattacaagtttccaagtcagtgaaaaaaa |
52423272 |
T |
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| Q |
419 |
cctaaatctccaataaagtgcagcgctgttggttctttgcaggctggtgtgtttgatttctactttattgggagattgtttctatctcttatttcgaagg |
518 |
Q |
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| T |
52423273 |
cctaaatctccaataaagtgcagcgctgttggttctttgcaggctggtgtgtttgatttctactttattgggagattgtttctatctcttatttcgaagg |
52423372 |
T |
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| Q |
519 |
ggattcgtctctg |
531 |
Q |
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| T |
52423373 |
ggattcgtctctg |
52423385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 183 - 407
Target Start/End: Original strand, 42715940 - 42716166
Alignment:
| Q |
183 |
aaaattgggtcgaatttaatcaccaacctcttaggtctaataaccaatctattcaaatgcaagtttgtttcaagttttctatcatact-gggtaggtctg |
281 |
Q |
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| T |
42715940 |
aaaattgggtc-aatttaatcaccaacctcttaggtctaataaccaatctattcaaaagcaagtttgtttcaagttctctatcatactggggtaggtctg |
42716038 |
T |
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| Q |
282 |
agtagagcaacttcttcca-attctttgaatagaagatgacaacataatcattgatcagttaaattattataaaattgatagagattagcatctat-tcc |
379 |
Q |
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| T |
42716039 |
agtagagaaacttcttacagtttttttgtatagaagatgaaagcataatcattgatctgttcatttattaaaaaattgctactgattagcatctatctcc |
42716138 |
T |
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| Q |
380 |
agttccttagattacaagtttccaagtc |
407 |
Q |
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| T |
42716139 |
aattccttagattacaagtttccaagtc |
42716166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 42715493 - 42715529
Alignment:
| Q |
63 |
atcatttataatgcaagttacttatattgggagacac |
99 |
Q |
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| T |
42715493 |
atcatttataatgcaaattacttatattgggagacac |
42715529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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