View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6436_high_6 (Length: 330)
Name: NF6436_high_6
Description: NF6436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6436_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 35726416 - 35726106
Alignment:
| Q |
18 |
attagcaactagtacaatacagcattttcctgcatggtaggcacgaagttgcaattgatagcaaaacaaatgtttccaatgttaagattggtttactcaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
35726416 |
attagcaactagtacaatacagcattttcctgcatggtaggcacgaagttgcaattaatagcaaaacaaatgtttccaatgttaaaattggtttactcaa |
35726317 |
T |
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| Q |
118 |
atcaaatgtactaattatttgtttttctaacaacaggccaatttagcccaaaacattgaaggtagaaagtattgtcaatatgattctgacattgccaccg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35726316 |
atcaaatgtactaattatttgtttttctaacaacaggccaatttagccaaaaacattgaaggtagaaagtattgtcaatatgattctgacattgccaccg |
35726217 |
T |
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| Q |
218 |
gcctaggtgttgggtccctctttatccttgttgcaagtcaagtgatcattatggttgtaactagatgcctgtgctgtgggagagccatgagacctagtgg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35726216 |
gcctaggtgttgggtccctctttatccttgttgcaagtcaagtgatcattatggttgtaactagatgcctgtgctgtgggagagccatgagacctagtgg |
35726117 |
T |
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| Q |
318 |
atccagatcat |
328 |
Q |
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||||||||||| |
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| T |
35726116 |
atccagatcat |
35726106 |
T |
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