View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6436_high_8 (Length: 289)
Name: NF6436_high_8
Description: NF6436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6436_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 17 - 285
Target Start/End: Complemental strand, 29269081 - 29268816
Alignment:
| Q |
17 |
ctaattaatcgagtataacagaaattaccaagcgaacaatatgtctaaaatttgaagatgaggccnnnnnnnncttaagcatcttgatccttttcccata |
116 |
Q |
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| T |
29269081 |
ctaattaatcgagtataacagaaattaccaagcgaacaatatggctaaaatttgaagatgaggccttttttttcttaagcatcttgatcctttttccata |
29268982 |
T |
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| Q |
117 |
ttaggatttatagtgttttattatcttaagtgcaaaacaaatcaaggatgaatgttttaaaccaattcaagactatgtatnnnnnnnctggatgggtttt |
216 |
Q |
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| T |
29268981 |
ttaggatttatagtgttttattatcttaagtgcaaaacaaatcaaggatgaatgttttaaaccaattcaagactatgtat-aaaaaactggatgggtttt |
29268883 |
T |
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| Q |
217 |
ttatgtactgtctaaaacnnnnnnngtcaaagttctttttagtctctctacttttccttcatctcactc |
285 |
Q |
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|||||||||||||||||| |||||||||| |||||||||||||||||||| |||| |||||| |
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| T |
29268882 |
ttatgtactgtctaaaactttttttgtcaaagttc--tttagtctctctacttttccctcatttcactc |
29268816 |
T |
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