View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6436_high_9 (Length: 289)

Name: NF6436_high_9
Description: NF6436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6436_high_9
NF6436_high_9
[»] chr5 (15 HSPs)
chr5 (1-271)||(39726437-39726707)
chr5 (1-271)||(38987724-38987988)
chr5 (1-267)||(39879833-39880099)
chr5 (1-267)||(40418302-40418562)
chr5 (109-246)||(3299639-3299779)
chr5 (109-246)||(3392532-3392672)
chr5 (1-231)||(39168865-39169098)
chr5 (156-246)||(1163549-1163639)
chr5 (1-73)||(1163680-1163752)
chr5 (156-246)||(1850100-1850190)
chr5 (1-66)||(3299555-3299620)
chr5 (1-66)||(3392448-3392513)
chr5 (1-73)||(1849987-1850059)
chr5 (1-73)||(39399878-39399950)
chr5 (180-212)||(39400042-39400074)
[»] chr4 (2 HSPs)
chr4 (1-261)||(25912100-25912357)
chr4 (1-60)||(44444772-44444831)


Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 39726437 - 39726707
Alignment:
Q  1 caaatcaggactcatctcggtcgtatcttaaaacccggtgaccatgctcttggttatgacctgtctggaggagtaggagaaggaggagctgacaccaaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39726437 caaatcaggactcatctcggtcgtatcttaaaacccggtgaccatgctcttggttatgacctgtctggaggagtaggagaaggaggagctgacaccaaca 39726536  T
Q  101 ccaataacaaccttcctgctgccattttgatcagcaagattagttatgccgaagtgaatggtagagttgttgctgtcaaggataagtgggaatctgatta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39726537 ccaataacaaccttcctgctgccattttgatcagcaagattagttatgccgaagtgaatggtagagttgttgctgtcaaggataagtgggaatctgatta 39726636  T
Q  201 tcaactcttcttcaatgatctacaacaagaccctcaactactcttcaagataacagcagcctaccgaaatc 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  39726637 tcaactcttcttcaatgatctacaacaagaccctcaactactcttcaagataacagcaccctaccgaaatc 39726707  T

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Target: chr5; HSP #2
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 38987724 - 38987988
Alignment:
Q  1 caaatcaggactcatctcggtcgtatcttaaaacccggtgaccatgctcttggttatgacctgtctggaggagtaggagaaggaggagctgacaccaaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||    
T  38987724 caaatcaggactcatctcggtcgtatcttaaaacccggtgaccatgctcttggttatgacctgtctggagga------gaaggaggagctgacaccaaca 38987817  T
Q  101 ccaataacaaccttcctgctgccattttgatcagcaagattagttatgccgaagtgaatggtagagttgttgctgtcaaggataagtgggaatctgatta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38987818 ccaataacaaccttcctgctgccattttgatcagcaagattagttatgccgaagtgaatggtagagttgttgctgtcaaggataagtgggaatctgatta 38987917  T
Q  201 tcaactcttcttcaatgatctacaacaagaccctcaactactcttcaagataacagcagcctaccgaaatc 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38987918 tcaactcttcttcaatgatctacaacaagaccctcaactactcttcaagataacagcagcctaccgaaatc 38987988  T

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Target: chr5; HSP #3
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 39879833 - 39880099
Alignment:
Q  1 caaatcaggactcatctcggtcgtatcttaaaacccggtgaccatgctcttggttatgacctgtctggaggagtaggagaaggaggagctgacaccaaca 100  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39879833 caaatcaggactcatcttggtcgtattttaaaacccggtgaccatgctcttggttatgacctgtctggaggagtaggagaaggaggagctgacaccaaca 39879932  T
Q  101 ccaataacaaccttcctgctgccattttgatcagcaagattagttatgccgaagtgaatggtagagttgttgctgtcaaggataagtgggaatctgatta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39879933 ccaataacaaccttcctgctgccattttgatcagcaagattagttatgccgaagtgaatggtagagttgttgctgtcaaggataagtgggaatctgatta 39880032  T
Q  201 tcaactcttcttcaatgatctacaacaagaccctcaactactcttcaagataacagcagcctaccga 267  Q
    |||||||||||||||||||||||||||| || || ||||  ||||||   ||| |||||||||||||    
T  39880033 tcaactcttcttcaatgatctacaacaaaacactaaactcatcttcagcgtaagagcagcctaccga 39880099  T

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Target: chr5; HSP #4
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 40418302 - 40418562
Alignment:
Q  1 caaatcaggactcatctcggtcgtatcttaaaacccggtgaccatgctcttggttatgacctgtctggaggagtaggagaaggaggagctgacaccaaca 100  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||    
T  40418302 caaatcaggactcatcttggtcgtattttaaaacccggtgaccatgctcttggttatgacctgtctggagga------gaaggaggagctgacaccaaca 40418395  T
Q  101 ccaataacaaccttcctgctgccattttgatcagcaagattagttatgccgaagtgaatggtagagttgttgctgtcaaggataagtgggaatctgatta 200  Q
     ||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |  | ||||||||||||||||||||    
T  40418396 tcaatatcaaccttcctgctgccattttgatcaccaagattagttatgccgaagagaatggtagagttgttgctcttcatgataagtgggaatctgatta 40418495  T
Q  201 tcaactcttcttcaatgatctacaacaagaccctcaactactcttcaagataacagcagcctaccga 267  Q
    ||||||||||||||||||||||||||||||| || |||| ||||||||  ||| |||||||||||||    
T  40418496 tcaactcttcttcaatgatctacaacaagacactaaactcctcttcaacgtaagagcagcctaccga 40418562  T

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Target: chr5; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 109 - 246
Target Start/End: Original strand, 3299639 - 3299779
Alignment:
Q  109 aaccttcctgctgccattttgatcagcaagattagttatgccgaagtg---aatggtagagttgttgctgtcaaggataagtgggaatctgattatcaac 205  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||| |   ||||||||||||||||||||  |||||||||||||||||||||||||||    
T  3299639 aaccttcctgctgccattttgatcaccaaaattagttatgccgaagaggagaatggtagagttgttgctgttcaggataagtgggaatctgattatcaac 3299738  T
Q  206 tcttcttcaatgatctacaacaagaccctcaactactcttc 246  Q
    ||||||| || ||||||||||||||| || |||| ||||||    
T  3299739 tcttcttaaaagatctacaacaagacactaaactcctcttc 3299779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 109 - 246
Target Start/End: Original strand, 3392532 - 3392672
Alignment:
Q  109 aaccttcctgctgccattttgatcagcaagattagttatgccgaagtg---aatggtagagttgttgctgtcaaggataagtgggaatctgattatcaac 205  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||| |   ||||||||||||||||||||  |||||||||||||||||||||||||||    
T  3392532 aaccttcctgctgccattttgatcaccaaaattagttatgccgaagaggagaatggtagagttgttgctgttcaggataagtgggaatctgattatcaac 3392631  T
Q  206 tcttcttcaatgatctacaacaagaccctcaactactcttc 246  Q
    ||||||| || ||||||||||||||| || |||| ||||||    
T  3392632 tcttcttaaaagatctacaacaagacactaaactcctcttc 3392672  T

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Target: chr5; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 39168865 - 39169098
Alignment:
Q  1 caaatcaggactcatctcggtcgtatcttaaaacccggtgaccatgctcttggttatgacctgtctggaggagtaggagaaggaggagctgacaccaaca 100  Q
    |||||||  |||||||| |||| ||| |||||| |||||||| ||||||||||||||||| |||||||| |   || || |||||||||| ||||||| |    
T  39168865 caaatcaaaactcatctaggtcatattttaaaatccggtgactatgctcttggttatgacttgtctggacgtaaagaaggaggaggagctaacaccaata 39168964  T
Q  101 ccaataacaaccttcctgctgccattttgatcagcaagattagttatgccgaagtgaatggtaga---gttgttgctgtcaaggataagtgggaatctga 197  Q
     ||||  | ||||||||||||| |||||||| | ||||| ||||||||  ||||  |||||||||   ||||||| |||  ||| |||||||||||||||    
T  39168965 tcaatggcgaccttcctgctgcaattttgattaccaagagtagttatgatgaagaaaatggtagaattgttgttgttgttgagggtaagtgggaatctga 39169064  T
Q  198 ttatcaactcttcttcaatgatctacaacaagac 231  Q
    |||||||||||| || || |||||||||||||||    
T  39169065 ttatcaactctttttaaaagatctacaacaagac 39169098  T

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Target: chr5; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 156 - 246
Target Start/End: Complemental strand, 1163639 - 1163549
Alignment:
Q  156 gaatggtagagttgttgctgtcaaggataagtgggaatctgattatcaactcttcttcaatgatctacaacaagaccctcaactactcttc 246  Q
    |||||||||||||||| ||||  |||||||||||||||||| ||||||||||||||| || |||||||||||||||||| |||| ||||||    
T  1163639 gaatggtagagttgttcctgttcaggataagtgggaatctggttatcaactcttcttaaaagatctacaacaagaccctaaactcctcttc 1163549  T

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Target: chr5; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 1163752 - 1163680
Alignment:
Q  1 caaatcaggactcatctcggtcgtatcttaaaacccggtgaccatgctcttggttatgacctgtctggaggag 73  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||| |||||    
T  1163752 caaatcaggactcatcttggtcgtattttaaaacccggtgaccatgctcttggttatgacctgcctgaaggag 1163680  T

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Target: chr5; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 156 - 246
Target Start/End: Original strand, 1850100 - 1850190
Alignment:
Q  156 gaatggtagagttgttgctgtcaaggataagtgggaatctgattatcaactcttcttcaatgatctacaacaagaccctcaactactcttc 246  Q
    ||||||||||||| || ||||  |||||||||||||||||||||||||||||||||| || ||| |||||||||||||| |||| ||||||    
T  1850100 gaatggtagagttattcctgttcaggataagtgggaatctgattatcaactcttcttaaaagatttacaacaagaccctaaactcctcttc 1850190  T

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Target: chr5; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 3299555 - 3299620
Alignment:
Q  1 caaatcaggactcatctcggtcgtatcttaaaacccggtgaccatgctcttggttatgacctgtct 66  Q
    ||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  3299555 caaatcaagactcatcttggtcgtattttaaaacccggtgaccatgctcttggttatgacctgtct 3299620  T

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Target: chr5; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 3392448 - 3392513
Alignment:
Q  1 caaatcaggactcatctcggtcgtatcttaaaacccggtgaccatgctcttggttatgacctgtct 66  Q
    ||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  3392448 caaatcaagactcatcttggtcgtattttaaaacccggtgaccatgctcttggttatgacctgtct 3392513  T

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Target: chr5; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 1849987 - 1850059
Alignment:
Q  1 caaatcaggactcatctcggtcgtatcttaaaacccggtgaccatgctcttggttatgacctgtctggaggag 73  Q
    |||||||||||||||||  ||||||| |||||||| ||||||||||||||||||||||||||| ||| |||||    
T  1849987 caaatcaggactcatcttagtcgtattttaaaacctggtgaccatgctcttggttatgacctgcctgaaggag 1850059  T

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Target: chr5; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 39399878 - 39399950
Alignment:
Q  1 caaatcaggactcatctcggtcgtatcttaaaacccggtgaccatgctcttggttatgacctgtctggaggag 73  Q
    ||||||||||||||||| |||| ||| |||||| |||||||| ||||||||||||||||| ||||||||||||    
T  39399878 caaatcaggactcatcttggtcatattttaaaatccggtgactatgctcttggttatgacttgtctggaggag 39399950  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 39400042 - 39400074
Alignment:
Q  180 ggataagtgggaatctgattatcaactcttctt 212  Q
    |||||||||| ||||||||||||||||||||||    
T  39400042 ggataagtggcaatctgattatcaactcttctt 39400074  T

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Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 25912357 - 25912100
Alignment:
Q  1 caaatcaggactcatctcggtcgtatcttaaaacccggtgaccatgctcttggttatgacctgtctggaggagtaggagaaggaggagctgacaccaaca 100  Q
    ||||||||||||||||| ||||||||  ||||||||| |||||||||||||||||||||||||||| ||||||   |||||||||||||| |||||||||    
T  25912357 caaatcaggactcatcttggtcgtattctaaaacccgatgaccatgctcttggttatgacctgtctagaggag---gagaaggaggagctaacaccaaca 25912261  T
Q  101 ccaataacaaccttcctgctgccattttgatcagcaagattagttatgccgaagtgaatggtagagttgttgctgtcaaggataagtgggaatctgatta 200  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||    
T  25912260 ccaataacaaccttcatgctgccattttgatcaccaagattagttatgccgaagagaatggtagagttgttgctgttcaggataagtgggaatctgatta 25912161  T
Q  201 tcaactcttcttcaatgatctacaacaagaccctcaactactcttcaagataacagcagcc 261  Q
    |||||||||||| ||| ||||||| ||||||||| ||||  |||||||  ||| |||||||    
T  25912160 tcaactcttcttaaattatctacagcaagaccctaaactgatcttcaacgtaagagcagcc 25912100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 44444831 - 44444772
Alignment:
Q  1 caaatcaggactcatctcggtcgtatcttaaaacccggtgaccatgctcttggttatgac 60  Q
    ||||||| ||||||||| |||||||| |||||||| |||||| |||||||||||||||||    
T  44444831 caaatcaagactcatcttggtcgtattttaaaacctggtgactatgctcttggttatgac 44444772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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