View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6436_low_1 (Length: 931)
Name: NF6436_low_1
Description: NF6436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6436_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 879; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 879; E-Value: 0
Query Start/End: Original strand, 19 - 909
Target Start/End: Complemental strand, 52771962 - 52771072
Alignment:
| Q |
19 |
aggtggttggattaacgatgcttatggacgaaagaaggcaactctcatcgcggatgtcatcttcattattggagcaattggtatggctgccgcgcctgat |
118 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52771962 |
aggtggttggattaacgatgcttacggacgaaagaaggcaactctcatcgcggatgtcatcttcattattggagcaattggtatggctgccgcgcctgat |
52771863 |
T |
|
| Q |
119 |
ccttacattctcataatcggacgccttcttgttggtttaggtgtcggcattgcctctgtcaccgctcccgtctacattgccgaagcatcaccttccgaaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52771862 |
ccttacattctcataatcggacgccttcttgttggtttaggtgtcggcattgcctctgtcaccgctcccgtctacattgccgaagcatcaccttccgaaa |
52771763 |
T |
|
| Q |
219 |
tcagaggttcattagtcagtactaattccctcatgatcaccagtggacaactcctttcctacatagttaacctcgcctttacgcgtgtccctggtacttg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52771762 |
tcagaggttcattagtcagtactaattccctcatgatcaccagtggacaactcctttcctacatagttaacctcgcctttacgcgtgtccctggtacttg |
52771663 |
T |
|
| Q |
319 |
gcgttggatgttgggtgtttcagctgtccctgaacttgttcaattcattctcatgcttttcctccctgaatcaccaagatggctttttatgaagaataga |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52771662 |
gcgttggatgttgggtgtttcagctgtccctgcacttgttcaattcattctcatgcttttcctccctgaatcaccaagatggctttttatgaagaataga |
52771563 |
T |
|
| Q |
419 |
aagaatgaagctgttgatgtcatttccaacatctatgacttggctcgtcttgaagacgaagttgattttctaacagctgaggcagaacaagacagacaga |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52771562 |
aagaatgaagctgttgatgtcatttccaacatctatgacttggctcgtcttgaagacgaagttgattttctaacagctgaggcagaacaagacagacaga |
52771463 |
T |
|
| Q |
519 |
aaaatatgaatgtcaaatttaaagatgtttttaaatctaaagaaatcagactagcattcatggttggagcaggattgatggtgttccaacagtttactgg |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52771462 |
aaaatatgaatgtcaaatttaaagatgtttttaaatctaaagaaatcagactagcattcatggttggagcaggattgatggtgttccaacagtttactgg |
52771363 |
T |
|
| Q |
619 |
cattaacacagtgatgtactacagtccaaccattgttcaaatggctggatttcaatctaaagagttggctcttcaaatctcactctttgttgctgcaatg |
718 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52771362 |
cattaacacagtgatgtactacagtccaaccattgttcaaatggctggatttcaatctaaagagttggctcttcaaatctcactctttgttgctgcaatg |
52771263 |
T |
|
| Q |
719 |
aatgctgtcggaactgttcttggtatttacctcattgatcatgcagggaggaagatattagctctttgtagcttaggaggagtgtttacatctttggttc |
818 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52771262 |
aatgctgtcggaactgttcttggtatttacctcattgatcatgcagggaggaagatattagctctttgtagcttaggaggagtgtttacatctttggttc |
52771163 |
T |
|
| Q |
819 |
tcttgtctgtggcattctcaaatcaaacctcagcagcagcatcaaatgctaccggatggcttgcagttttgggtttgatactgtatatagc |
909 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52771162 |
tcttgtctgtggcattctcaaatcaaacctcggcagcagcatcaaatgctaccggatggcttgcagttttgggtttgatactgtatatagc |
52771072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 623 - 801
Target Start/End: Complemental strand, 52767403 - 52767225
Alignment:
| Q |
623 |
aacacagtgatgtactacagtccaaccattgttcaaatggctggatttcaatctaaagagttggctcttcaaatctcactctttgttgctgcaatgaatg |
722 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||| ||||||||||||||| |||| ||| | ||||||| |||||| |
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|
| T |
52767403 |
aacacagtgatgtactacagtccaacaattgtccaaatggctggctttcactctaatgagttggctcttcaactctctctcatagttgctggcttgaatg |
52767304 |
T |
|
| Q |
723 |
ctgtcggaactgttcttggtatttacctcattgatcatgcagggaggaagatattagctctttgtagcttaggaggagt |
801 |
Q |
| |
|
||| |||||| ||||||||||||||||| ||||| |||||||| |||| | |||||| || | ||||||||||||||| |
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|
| T |
52767303 |
ctgccggaacagttcttggtatttaccttattgaccatgcaggacggaaaaaattagccctgtatagcttaggaggagt |
52767225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 52769023 - 52768909
Alignment:
| Q |
19 |
aggtggttggattaacgatgcttatggacgaaagaaggcaactctcatcgcggatgtcatcttcattattggagcaattggtatggctgccgcgcctgat |
118 |
Q |
| |
|
|||||||||||| || ||| ||||||| ||||||||||||| |||| || ||||| ||||| ||| | |||||||||| |||||||| ||||| ||| |
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| T |
52769023 |
aggtggttggatgaatgatcgttatggaagaaagaaggcaaccatcattgcagatgttatctttattctcggagcaattgtcatggctgctgcgccagat |
52768924 |
T |
|
| Q |
119 |
ccttacattctcata |
133 |
Q |
| |
|
||||| ||||||||| |
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|
| T |
52768923 |
ccttatattctcata |
52768909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 1e-34; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 20 - 267
Target Start/End: Original strand, 390090 - 390337
Alignment:
| Q |
20 |
ggtggttggattaacgatgcttatggacgaaagaaggcaactctcatcgcggatgtcatcttcattattggagcaattggtatggctgccgcgcctgatc |
119 |
Q |
| |
|
||||||||| |||| || ||||||||| |||||||||| || ||| | || ||||| ||||| ||| | ||||||||| |||||||| || ||||||| |
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|
| T |
390090 |
ggtggttggcttaatgacgcttatggaagaaagaaggccacactcttagctgatgttatctttattctcggagcaattctcatggctgctgcacctgatc |
390189 |
T |
|
| Q |
120 |
cttacattctcataatcggacgccttcttgttggtttaggtgtcggcattgcctctgtcaccgctcccgtctacattgccgaagcatcaccttccgaaat |
219 |
Q |
| |
|
|||| |||||||| ||||| ||||| |||||||| ||||| ||||| || ||||| || ||||| ||||||||||| |||| |||| || ||||| |
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|
| T |
390190 |
cttatgttctcatagcaggacgtcttctcgttggtttgggtgttggcatagcttctgttactgctcctgtctacattgcagaagtcgcaccctctgaaat |
390289 |
T |
|
| Q |
220 |
cagaggttcattagtcagtactaattccctcatgatcaccagtggaca |
267 |
Q |
| |
|
|||||| ||||||||||| |||||| ||||||||||||| ||||||| |
|
|
| T |
390290 |
cagaggctcattagtcagcactaatgtcctcatgatcaccggtggaca |
390337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 608 - 756
Target Start/End: Original strand, 392439 - 392587
Alignment:
| Q |
608 |
cagtttactggcattaacacagtgatgtactacagtccaaccattgttcaaatggctggatttcaatctaaagagttggctcttcaaatctcactctttg |
707 |
Q |
| |
|
|||||||| || || ||||| |||||||||||||||||||||||||||||||||||||| || || | || |||||||||||| | || ||| | | |
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| T |
392439 |
cagtttacaggtataaacacggtgatgtactacagtccaaccattgttcaaatggctggcttccatgccaatcagttggctcttcttctgtccctcatag |
392538 |
T |
|
| Q |
708 |
ttgctgcaatgaatgctgtcggaactgttcttggtatttacctcattga |
756 |
Q |
| |
|
|||||| ||||| ||||||||||| ||||||| |||||||| ||||| |
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|
| T |
392539 |
ttgctggcatgaacgctgtcggaacaattcttggcatttaccttattga |
392587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 317 - 408
Target Start/End: Original strand, 390723 - 390814
Alignment:
| Q |
317 |
tggcgttggatgttgggtgtttcagctgtccctgaacttgttcaattcattctcatgcttttcctccctgaatcaccaagatggctttttat |
408 |
Q |
| |
|
||||| |||||| | |||||||||| ||| |||| |||| | || |||||| |||||| |||||||| ||||| ||||||||||| ||||| |
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|
| T |
390723 |
tggcgatggatgcttggtgtttcaggtgtgcctgcacttatccagttcatttgcatgctcttcctccccgaatctccaagatggctatttat |
390814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 228
Target Start/End: Complemental strand, 38013986 - 38013775
Alignment:
| Q |
17 |
acaggtggttggattaacgatgcttatggacgaaagaaggcaactctcatcgcggatgtcatcttcattattggagcaattggtatggctgccgcgcctg |
116 |
Q |
| |
|
|||||||| |||||||| ||||||| |||||| ||||||||||| || | || ||||| |||| | | ||||| || ||| ||||||| ||||||| | |
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|
| T |
38013986 |
acaggtggctggattaatgatgcttttggacgtaagaaggcaacacttagtgctgatgttgtctttactcttggatcagttgttatggcttccgcgccag |
38013887 |
T |
|
| Q |
117 |
atccttacattctcataatcggacgccttcttgttggtttaggtgtcggcattgcctctgtcaccgctcccgtctacattgccgaagcatcaccttccga |
216 |
Q |
| |
|
|| | || |||||||| | || || ||||||||||| | ||||| || | ||||||||||| ||||| || || ||||| ||| | ||||| || || |
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|
| T |
38013886 |
atgcatatgttctcatacttggccgtcttcttgttggcattggtgtgggtgtagcctctgtcacggctcctgtatatattgcagaatcctcaccatcaga |
38013787 |
T |
|
| Q |
217 |
aatcagaggttc |
228 |
Q |
| |
|
||| || ||||| |
|
|
| T |
38013786 |
aataaggggttc |
38013775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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