View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6436_low_10 (Length: 266)

Name: NF6436_low_10
Description: NF6436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6436_low_10
NF6436_low_10
[»] chr5 (1 HSPs)
chr5 (9-249)||(39252752-39252992)
[»] chr1 (1 HSPs)
chr1 (150-245)||(15837953-15838048)
[»] chr4 (5 HSPs)
chr4 (173-245)||(2367689-2367761)
chr4 (171-245)||(12124798-12124872)
chr4 (171-245)||(12126854-12126928)
chr4 (181-245)||(2486281-2486345)
chr4 (181-245)||(2519207-2519271)


Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 9 - 249
Target Start/End: Original strand, 39252752 - 39252992
Alignment:
Q  9 ggcatcaccatccttttgtcatagaaggagcagatcatcgaattttcaaacaagaatgatggcagaagcatgttcatatttaccagagtttaccagagga 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39252752 ggcatcaccatccttttgtcatagaaggagcagatcatcgaattttcaaacaagaatgatggcagaagcatgttcatatttaccagagtttaccagagga 39252851  T
Q  109 gttataggaatgcatcttgaaattccacaacgcagacaatcacactttgaagtccgtctcttttgtctccatacagtttctctccatcagcaaccgtctc 208  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  39252852 gttatgggaatgcatcttgaaattccacaacgcagacaatcacactttgaagtccgtctctttcgtctccatacagtttctctccatcagcaaccgtctc 39252951  T
Q  209 cgatcctccctcgcaatcaccgatcaaacaatcccttccct 249  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  39252952 cgatcctccctcgcaatcaccgatcaaacaatcccttccct 39252992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 150 - 245
Target Start/End: Original strand, 15837953 - 15838048
Alignment:
Q  150 acactttgaagtccgtctcttttgtctccatacagtttctctccatcagcaaccgtctccgatcctccctcgcaatcaccgatcaaacaatccctt 245  Q
    ||||||| |||||| ||||  | ||||||| ||||||||||||||||| |||||||||||||| |||||||  |||||  ||||||||||||||||    
T  15837953 acactttcaagtccctctcgatggtctccaaacagtttctctccatcaccaaccgtctccgattctccctcaaaatcatagatcaaacaatccctt 15838048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 2367689 - 2367761
Alignment:
Q  173 gtctccatacagtttctctccatcagcaaccgtctccgatcctccctcgcaatcaccgatcaaacaatccctt 245  Q
    ||||||| ||| ||||||||||||| |||||||||||||| |||| | |||||  ||||| ||||||||||||    
T  2367689 gtctccaaacaatttctctccatcaccaaccgtctccgattctccatagcaatgtccgataaaacaatccctt 2367761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 245
Target Start/End: Complemental strand, 12124872 - 12124798
Alignment:
Q  171 ttgtctccatacagtttctctccatcagcaaccgtctccgatcctccctcgcaatcaccgatcaaacaatccctt 245  Q
    ||||||||| ||| ||||||||||||| ||||||||||| ||  ||| |||||||| | ||| ||||||||||||    
T  12124872 ttgtctccaaacaatttctctccatcaccaaccgtctccaattttccatcgcaatctctgatgaaacaatccctt 12124798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 245
Target Start/End: Complemental strand, 12126928 - 12126854
Alignment:
Q  171 ttgtctccatacagtttctctccatcagcaaccgtctccgatcctccctcgcaatcaccgatcaaacaatccctt 245  Q
    ||||||||| ||| ||||||||||||| ||||||||||| || |||| ||||| || | ||| ||| ||||||||    
T  12126928 ttgtctccaaacaatttctctccatcaccaaccgtctcctattctccatcgcagtctcagatgaaaaaatccctt 12126854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 2486345 - 2486281
Alignment:
Q  181 acagtttctctccatcagcaaccgtctccgatcctccctcgcaatcaccgatcaaacaatccctt 245  Q
    ||||||||| ||||||| |||||||||||||| |||  || ||||| ||||  ||||||||||||    
T  2486345 acagtttctgtccatcaccaaccgtctccgattctcggtcacaatctccgagaaaacaatccctt 2486281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 2519271 - 2519207
Alignment:
Q  181 acagtttctctccatcagcaaccgtctccgatcctccctcgcaatcaccgatcaaacaatccctt 245  Q
    ||||||||| ||||||| ||||||| | ||||||||  || ||||| | ||||||||||||||||    
T  2519271 acagtttctgtccatcaccaaccgttttcgatcctcagtcacaatctcagatcaaacaatccctt 2519207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University