View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6436_low_11 (Length: 265)
Name: NF6436_low_11
Description: NF6436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6436_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 31649989 - 31650238
Alignment:
| Q |
1 |
tttcttctttcgacgctttcttctagtataccattgacaacactcaaaagtgattgagtaggagcattctgcaacagtaaatgctgaaataaatcagtga |
100 |
Q |
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| T |
31649989 |
tttcttctttcaacactttcttctagtataccattgacaacactcaaaagtgattgagtaggagcattctgcaacagtaaatgctgaaataaatcagtga |
31650088 |
T |
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| Q |
101 |
tgcatagaactaaaaaggataatcataacctatgtgaatgtgaaaatgatgaaaacaataagagagtttacatccaaacttgatgatttcattagttccg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31650089 |
tgcatagaactaaaaaggataatcataacctatgtgaatgtgaaaatgatgaaaacaataagagagtttacatccaaacttgatgatttcattagttccg |
31650188 |
T |
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| Q |
201 |
aaattttggcagaaggaagatcgacataacttccatgcttttgttgaaat |
250 |
Q |
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| T |
31650189 |
aaattttggcagaaggaagatcgacataacttccatgcttttgttgaaat |
31650238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 43878503 - 43878428
Alignment:
| Q |
1 |
tttcttctttcgacgctttcttctagtataccattgacaacactcaaaagtgattgagtaggagcattctgcaaca |
76 |
Q |
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|||||||| |||||||||||||| || ||||||||||||||||| || || |||||||| |||||||||||||||| |
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| T |
43878503 |
tttcttctctcgacgctttcttcaagaataccattgacaacacttaatagcgattgagtgggagcattctgcaaca |
43878428 |
T |
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