View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6436_low_12 (Length: 252)
Name: NF6436_low_12
Description: NF6436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6436_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 51 - 243
Target Start/End: Original strand, 6967004 - 6967196
Alignment:
| Q |
51 |
attgtgtgtgtttttcttagaaaatggtgtgatgacttgtgactttgaaagaattaaatttattatgcttcctcgaaactacatatcttttcattgactc |
150 |
Q |
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| T |
6967004 |
attgtgtgtgtttttcttagaaaatggtgtgatgacttgtgactttgaaagaattaaatttattatgcttcctcgaaactacatatcttttcattgactc |
6967103 |
T |
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| Q |
151 |
gaatttttacgttgacttgatgaaacttccttgttcatgcttcttcgagcaaaaacgaagaagcttccttccattttcttgttaaacttcata |
243 |
Q |
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| T |
6967104 |
gaatttttacgttgacttgatgaaacttccttgttcatgcttcttcgagcaaaaacgaagaagcttccttccattttcttgttaaacttcata |
6967196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 114 - 236
Target Start/End: Complemental strand, 4920824 - 4920701
Alignment:
| Q |
114 |
tatgcttcctcgaaactacatatctttt-cattgactcgaatttttacgttgacttgatgaaacttccttgttcatgcttcttcgagcaaaaacgaagaa |
212 |
Q |
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|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||| |
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| T |
4920824 |
tatgcttcctcgaaactacagatctttttcattgactcgaatttttacgttgacttgatgaaacttccctgttcatgcttattcgaacaaaaacgaagaa |
4920725 |
T |
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| Q |
213 |
gcttccttccattttcttgttaaa |
236 |
Q |
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| T |
4920724 |
ccttcctaccattttcttgttaaa |
4920701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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