View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6436_low_14 (Length: 238)
Name: NF6436_low_14
Description: NF6436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6436_low_14 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 8789746 - 8789966
Alignment:
| Q |
18 |
aactgtcagagccgaagttgctacagaagcacctgctcctgttaaggttgaaaagatatcaaagaaacaggaagaaggtattgttgtgaacaagtttaaa |
117 |
Q |
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| T |
8789746 |
aactgtcagagccgaagttgctacagaagcacctgctcctgttaaggttgaaaagatatcaaagaaacaggaagaaggtattgttgtgaacaagtttaaa |
8789845 |
T |
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| Q |
118 |
ccaaagacaccatacattggaaggtgtcttctcaacacaaagatcactggtgatgatgcacctggtgaaacctggcacatggttttcagcactgagggtg |
217 |
Q |
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| T |
8789846 |
ccaaagacaccatacattggaaggtgtcttctcaacacaaagatcactggtgatgatgcacctggtgaaacctggcacatggttttcagcactgagggtg |
8789945 |
T |
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| Q |
218 |
agtgttctcatgcatttcctc |
238 |
Q |
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| T |
8789946 |
agtgttctcatgcatttcctc |
8789966 |
T |
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