View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6436_low_15 (Length: 233)
Name: NF6436_low_15
Description: NF6436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6436_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 20 - 217
Target Start/End: Complemental strand, 4920891 - 4920694
Alignment:
| Q |
20 |
actctctgttgaaggaaggaatcttgataacttgtgacttgaatgaattaaatttattaaactttcgtatgcttcctcgaaactacagatctttttcatt |
119 |
Q |
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| T |
4920891 |
actctctgttgaaggaaggaatcttgataacttgtgacttgaatgaattaaatttattaaactttcgtatgcttcctcgaaactacagatctttttcatt |
4920792 |
T |
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| Q |
120 |
gactcgaatttttacgttgacttgatgaaactttcttgttcatgcttattcgaacaaaaacgaagaaccttcataccattttcttgttaaaacttcat |
217 |
Q |
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| T |
4920791 |
gactcgaatttttacgttgacttgatgaaacttccctgttcatgcttattcgaacaaaaacgaagaaccttcctaccattttcttgttaaaacttcat |
4920694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 4927124 - 4927079
Alignment:
| Q |
64 |
gaattaaatttattaaactttcgtatgcttcctcgaaactacagat |
109 |
Q |
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| T |
4927124 |
gaattaaatttattaaacttttgtatgcttcctcgaaactacagat |
4927079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 87 - 210
Target Start/End: Original strand, 6967067 - 6967189
Alignment:
| Q |
87 |
tatgcttcctcgaaactacagatctttttcattgactcgaatttttacgttgacttgatgaaactttcttgttcatgcttattcgaacaaaaacgaagaa |
186 |
Q |
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|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||| |
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| T |
6967067 |
tatgcttcctcgaaactacatatctttt-cattgactcgaatttttacgttgacttgatgaaacttccttgttcatgcttcttcgagcaaaaacgaagaa |
6967165 |
T |
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| Q |
187 |
ccttcataccattttcttgttaaa |
210 |
Q |
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| T |
6967166 |
gcttccttccattttcttgttaaa |
6967189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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