View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6436_low_4 (Length: 386)
Name: NF6436_low_4
Description: NF6436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6436_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 40235823 - 40235579
Alignment:
| Q |
1 |
aatattttatcctaagggatcatagaggaacagattggcatgtcaaagcacgttctattggtcgcaagctttattttgatgatggttggaaactattcag |
100 |
Q |
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| T |
40235823 |
aatattttatcctaagggatcatagaggaacagattggcatgtcaaagcacgttctattggtcgcaagctttattttgatgatggttggaaactattcag |
40235724 |
T |
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| Q |
101 |
agaagaaaattctttaaaggacaatgacttccttgtttttcagacatattgaaaacaatgtattcaagttcaaaatttatgaactatcatcaatgtgtaa |
200 |
Q |
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| T |
40235723 |
agaagaaaattctttagaggacaatgacttccttg-ttttcagacatattgaaaacaatgtattcaagttcaaaatttatgaactatcatcaatgtgtaa |
40235625 |
T |
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| Q |
201 |
aaagatgaaggtaatggatggggaggaaaataataatatgttggag |
246 |
Q |
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| T |
40235624 |
aaagatgaaggtaatggatggggaggaaaataataatatgttggag |
40235579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 4 - 238
Target Start/End: Original strand, 17460809 - 17461042
Alignment:
| Q |
4 |
attttatcctaagggatcatagaggaacagattggcatgtcaaagcacgttctattggtcgcaagctttattttgatgatggttggaaactattcagaga |
103 |
Q |
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| T |
17460809 |
attttatcctaagagatcatagaggaagtgattggcatgtcaaagtgtgttctattggcaacaaactttattttgatgatggttggaaactattcagaga |
17460908 |
T |
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| Q |
104 |
agaaaattctttaaaggacaatgacttccttgtttttcagacatattgaaaacaatgtattcaagttcaaaatttatgaactatcatcaatgtgtaaaaa |
203 |
Q |
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| T |
17460909 |
agaaaattctttagaggacaatgacttccttg-ttttcacgcatattgaaaacaatgtattcaagttcaaaatccttgaactatcatcaatgtgtcaaaa |
17461007 |
T |
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| Q |
204 |
gatgaaggtaatggatggggaggaaaataataata |
238 |
Q |
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| T |
17461008 |
gatgaaggtaatggacgaggaggaaaatactaata |
17461042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 4 - 245
Target Start/End: Original strand, 17454592 - 17454832
Alignment:
| Q |
4 |
attttatcctaagggatcatagaggaacagattggcatgtcaaagcacgttctattggtcgcaagctttattttgatgatggttggaaactattcagaga |
103 |
Q |
| |
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||||||||||||| |||| |||| ||| ||||||| |||||||||| ||| ||||||| | || | |||||||||||||| ||||| ||| ||| | |
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| T |
17454592 |
attttatcctaagagatcgtagaagaagagattggtatgtcaaagcgcgtcgtattggtgacgagttctattttgatgatggctggaagaaatttagaca |
17454691 |
T |
|
| Q |
104 |
agaaaattctttaaaggacaatgacttccttgtttttcagacatattgaaaacaatgtattcaagttcaaaatttatgaactatcatcaatgtgtaaaaa |
203 |
Q |
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|||||||| |||| ||| |||||||||||||||||| | ||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||| |
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| T |
17454692 |
agaaaattgtttagtggagaatgacttccttgttttt-actcatattgaaaacaatgtattcaaattcaaaattcttgaactatcatcaatgtgtgaaaa |
17454790 |
T |
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| Q |
204 |
gatgaaggtaatggatggggaggaaaataataatatgttgga |
245 |
Q |
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|||| ||| ||||| | |||||||||||||||||| |||| |
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| T |
17454791 |
gatgccggtgatggaagatgaggaaaataataatatgatgga |
17454832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 4 - 240
Target Start/End: Complemental strand, 17394237 - 17394002
Alignment:
| Q |
4 |
attttatcctaagggatcatagaggaacagattggcatgtcaaagcacgttctattggtcgcaagctttattttgatgatggttggaaactattcagaga |
103 |
Q |
| |
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||||||||||||| |||| |||||||| |||||||||||||||||| ||| |||||| ||||||||||||| | ||| ||||| | ||| ||||| |
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| T |
17394237 |
attttatcctaagagatcgtagaggaagagattggcatgtcaaagctcgtcttattggcgatgagctttattttgacggtggctggaagcaatttagaga |
17394138 |
T |
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| Q |
104 |
agaaaattctttaaaggacaatgacttccttgtttttcagacatattgaaaacaatgtattcaagttcaaaatttatgaactatcatcaatgtgtaaaaa |
203 |
Q |
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|||||||||||| |||| |||| |||||||||||| | |||||||||||| | ||||||| |||||||||| |||||||||||| |||||| |||| |
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| T |
17394137 |
ggaaaattctttagaggaggatgatttccttgttttt-acacatattgaaaataccgtattcaggttcaaaattcttgaactatcatcgatgtgtgaaaa |
17394039 |
T |
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| Q |
204 |
gatgaaggtaatggatggggaggaaaataataatatg |
240 |
Q |
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| T |
17394038 |
gaagaaggtaagtgtcgtggaggaaaataacaatatg |
17394002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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