View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6436_low_5 (Length: 360)
Name: NF6436_low_5
Description: NF6436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6436_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 31649892 - 31649542
Alignment:
| Q |
1 |
tttttgtatattatctaacacaattttcttttcatcttagcgtgtggcgtgcttgctaagaaaagttgtccaagagattgagcggcgtatatctacacaa |
100 |
Q |
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| T |
31649892 |
tttttgtatattatctaacaaaattttcttttcatcttagcgtgtggcgtgcttgctaagaaaagttgtccaagagattgagcggcgtatatctacacaa |
31649793 |
T |
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| Q |
101 |
caagagcatttaaaaactgtatgtcgattacatcgtttttagaaagtaaatgagacttagttttgtccgtttttcttg-nnnnnnnnngttgctgtctta |
199 |
Q |
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| T |
31649792 |
caagagcatttaaaaactgtatgtcgattacatcgtttttagaaagtaaacgagacctagttttgtccgtttttctcgttttttttatgttgctgtctta |
31649693 |
T |
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| Q |
200 |
ccctttgtcttcagcaaaacaatcttttcaagactcgtgaagaaaaatataaatcaagaataacagtacttgaggctcttgcatcaggaacaactgaaga |
299 |
Q |
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| T |
31649692 |
ccctttgtcttcagcaaaacaatcttttcaagactcgtgaagaaaaatataaatcaagaataacagtacttgaggctcttgcatcaggaacaactgaaga |
31649593 |
T |
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| Q |
300 |
gagtaaggtctcaaaggtagttctatctatttatcttattaaaaatgatga |
350 |
Q |
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| T |
31649592 |
gagtaaggtctcaaaggtagttctatctatttatcttattaaaaatgatga |
31649542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 209 - 308
Target Start/End: Original strand, 43878792 - 43878891
Alignment:
| Q |
209 |
ttcagcaaaacaatcttttcaagactcgtgaagaaaaatataaatcaagaataacagtacttgaggctcttgcatcaggaacaactgaagagagtaaggt |
308 |
Q |
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| T |
43878792 |
ttcagcaaagtaatctttttaaggcccgggaagaaaaatatcagtcgagaataagagtactcgaggcacttgcatctggaactagagaagagagtgaggt |
43878891 |
T |
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