View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6437_high_10 (Length: 275)
Name: NF6437_high_10
Description: NF6437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6437_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 20 - 269
Target Start/End: Complemental strand, 47317653 - 47317404
Alignment:
| Q |
20 |
tcaacgggtctgtaatcgtcaagaaatgaattgattgtggtctcccaataaacagcatcgcctccgttgttctgaatacgagtcaaatgggaatcttcca |
119 |
Q |
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| T |
47317653 |
tcaacgggtctgtaatcgtcaaggaatgaattgattgtggtctcccaataaacagcatcgcctccgttgttctgaatacgagtcaaatgggaatcttcca |
47317554 |
T |
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| Q |
120 |
agtgaataagaagtcctgttttctgactaaagtgtccaagcaaaacatgtcttatgatctctgatgagccttcacttctggcttttaatgtggatggatc |
219 |
Q |
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| T |
47317553 |
agtgaataagaagtcctgttttctgactaaagtgtccaagcaaaacatgtcttatgatctctgatgagccttcacttctggcttttaatgtggatggatc |
47317454 |
T |
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| Q |
220 |
agaacatattttgagaatgaaacagtcctctccatttatcttcttctcac |
269 |
Q |
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| T |
47317453 |
agaacatattttgagaatgaaacagtcctctccatttatcttcttctcac |
47317404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 20 - 267
Target Start/End: Original strand, 5406427 - 5406674
Alignment:
| Q |
20 |
tcaacgggtctgtaatcgtcaagaaatgaattgattgtggtctcccaataaacagcatcgcctccgttgttctgaatacgagtcaaatgggaatcttcca |
119 |
Q |
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| T |
5406427 |
tcaacaggtctgtagtcgtcaagaaatgaatttatcgtggtctcccaataaactgcatcgcctccattgttctgaatacgggtcaaatgggaatcttcca |
5406526 |
T |
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| Q |
120 |
agtgaataagaagtcctgttttctgactaaagtgtccaagcaaaacatgtcttatgatctctgatgagccttcacttctggcttttaatgtggatggatc |
219 |
Q |
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| T |
5406527 |
agtgaacaagaagtcctgttttctgactaaagtatccgaacaaaacgtgccttatgatctctgctggaccttcgctcctggcttttaatgtcgatggatc |
5406626 |
T |
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| Q |
220 |
agaacatattttgagaatgaaacagtcctctccatttatcttcttctc |
267 |
Q |
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| T |
5406627 |
tgcacaaagcttgaggatgaaacaatcctcttcatttatcttcttctc |
5406674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 152
Target Start/End: Original strand, 48371664 - 48371787
Alignment:
| Q |
29 |
ctgtaatcgtcaagaaatgaattgattgtggtctcccaataaacagcatcgcctccgttgttctgaatacgagtcaaatgggaatcttccaagtgaataa |
128 |
Q |
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| T |
48371664 |
ctgtaatcatcaaggaatgaattgatcgttgtttcccaataaaccgcgtcacctccattggattgtatgcgggtcagatgagaatcctcaatgtgaacaa |
48371763 |
T |
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| Q |
129 |
gaagtcctgttttctgactaaagt |
152 |
Q |
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| T |
48371764 |
gaagcccagttttctgactaaagt |
48371787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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