View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6437_high_16 (Length: 223)
Name: NF6437_high_16
Description: NF6437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6437_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 3826160 - 3826351
Alignment:
| Q |
17 |
cagagacaaccctgcgcaatatcaaatagaactattgcatgttagaggttgaagacacccttgatttagagcgtaactaa----accctttagctaaata |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
3826160 |
cagagacaaccctgcgcaatatcaaatagaactattgcatgttagaggttgaagacacccttaatttagagcgtaactaattaaaccctttagctaaata |
3826259 |
T |
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| Q |
113 |
agcttaaaggatcccataacccatatacaaagaatgagcttatcatttttgaagccaatcggctcaaacgcactatcgagtttatataccaat |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3826260 |
-gcttaaaggatcccataacccatatacaaagaatgagcttatctattttgaagccaatcggctcaaacgcactatcgagtttatataccaat |
3826351 |
T |
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