View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6437_high_7 (Length: 337)
Name: NF6437_high_7
Description: NF6437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6437_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 322
Target Start/End: Complemental strand, 12219857 - 12219554
Alignment:
| Q |
19 |
ctcgagcacctatcttcacatcttccagcatttccatgctatgtccgtgattaattagctgttacacataaccacaatttttatagagttacattactct |
118 |
Q |
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| T |
12219857 |
ctcgagcacctatcttcacatcttccagcatttccatgctatgtccgtgattaattagctgttacacataaccacaatttttatagagttacattactct |
12219758 |
T |
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| Q |
119 |
atgtttggtgcagtaaatataatacacaattttatttcattcatttgtatttatagtcactcaatcatataaccatttgatctttaaaatacatacactt |
218 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
12219757 |
atgtttggtgcagtaaatataatacacaattatatttcattcatttgtatttatagtcactcaatcatataaccatttgatctttgaaatacatgtactt |
12219658 |
T |
|
| Q |
219 |
ttcatcatatagtcatacaaattgatagtttatatataactgaattgcaatctgaaaagttttacattgaccttatatcaaaattattctcttaatttta |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12219657 |
ttcatcatatagtcatacaaattgatagtttatatataactgaattgcaatctgaaaagttttacattgaccttatatcaaaattattctcttaatttta |
12219558 |
T |
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| Q |
319 |
gtct |
322 |
Q |
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|||| |
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| T |
12219557 |
gtct |
12219554 |
T |
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