View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6437_low_1 (Length: 574)
Name: NF6437_low_1
Description: NF6437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6437_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 421; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 18 - 566
Target Start/End: Original strand, 8090748 - 8091304
Alignment:
| Q |
18 |
attctagaaaatagatgattctgattattaatatacnnnnnnnntgatataattgtggacttttagcaggtacaatcgcagtaaaaaatcgtaatggacc |
117 |
Q |
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| T |
8090748 |
attctagaaaatagatgattctgattattaatctacaaaaaaaatgatgtaattgtggacttttagcaggtaaaatcgcagtaaaaaatcgtaatggacc |
8090847 |
T |
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| Q |
118 |
tgaaagactaggcgaagctggtcttgcactgcactatgctaacattatcaatcagataaatgtgatagtaagtttgtaatttgtaatatgctagctaatt |
217 |
Q |
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| T |
8090848 |
tgaaagactaggcgaagctggtcttgcactgcactatgctaacattatcaatcagataaatgtgatagtaagtttgtaatttgtaatatgcta----att |
8090943 |
T |
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| Q |
218 |
tatttagtagaggttacaaagtaaggttttaaaaaacaatcacattgcagtcacgtgcgtgtgtgatatttaatgttgcagaaaattgcgataaaatgtg |
317 |
Q |
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| T |
8090944 |
tatttagtagaggttacaaagtaaggttttaaaaaacaatcacattgcagtcacgtgcgtgtgtgatatttaatgttgcagaaaattgcgataaaatgtg |
8091043 |
T |
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| Q |
318 |
attatataagcataagagtattgatgttacggtctagatcgcaatcccaaacttttttaaaataaaattctagtgcagagttgtga-------------- |
403 |
Q |
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| T |
8091044 |
attatataagcataaaagtattgatgttacggtctagatcgcaatcccaaacttttt-----taaaattctagtgcagagttgtgactttgtaggtagta |
8091138 |
T |
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| Q |
404 |
---tatctctatttatttctttgtctaaataaaatgttggtttctgaatttatatcaggcatcacgcccgaccattcttcctccaaatatgagggacaca |
500 |
Q |
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| T |
8091139 |
ctttatctctatttatttctttgtataaataaaatgttggtttctgactttatatcaggcatcacgcccgaccattcttcctccaaatatgagggacaca |
8091238 |
T |
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| Q |
501 |
ctgtataaaggtttgcccaataatattaagaatgcccttccttcgcggctgcaaaatgatgatgtc |
566 |
Q |
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| T |
8091239 |
ctttataaaggtttgcccaataatattaagaatgcccttccttcgcggctgcaaaatgatgatgtc |
8091304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 68 - 297
Target Start/End: Original strand, 8093466 - 8093687
Alignment:
| Q |
68 |
aattgtggacttttagcaggtacaatcgcagtaaaaaatcgtaatggacctgaaagactaggcgaagctggtcttgcactgcactatgctaacattatca |
167 |
Q |
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| T |
8093466 |
aattgtagatttttagcatatacaatcgcagtaaaaaatggtaatggacctgaaagactaggcgaagctggtcttgcacttgactatgctaacattatca |
8093565 |
T |
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| Q |
168 |
atcagataaatgtgatagtaagtttgtaatttgtaatatgctagctaatttatttagtagaggttacaaagtaaggttttaaaaaacaatcacattgcag |
267 |
Q |
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| T |
8093566 |
atcagataaatatgatagtaagtttgtaatttgtaatat----gctaatctatttagtagagactacaaagtaaggttttaaatgagaatcgcatttcag |
8093661 |
T |
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| Q |
268 |
tcacgtgcgtgtgtgatatttaatgttgca |
297 |
Q |
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| T |
8093662 |
tc----gcgtgcgtgatatttaatgttgca |
8093687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 255 - 315
Target Start/End: Complemental strand, 8094750 - 8094690
Alignment:
| Q |
255 |
aatcacattgcagtcacgtgcgtgtgtgatatttaatgttgcagaaaattgcgataaaatg |
315 |
Q |
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| T |
8094750 |
aatcacattgcagtcgcgcgtgtgtgtgatatttaatgttgcagaaaattgcgatataatg |
8094690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 8094817 - 8094749
Alignment:
| Q |
91 |
aatcgcagtaaaaaatcgtaatggacctgaaagactaggcgaagctggtcttgcactgcactatgctaa |
159 |
Q |
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| T |
8094817 |
aatcgcagttaaaagttgtaatggacctcaaaaactaggcgatgctggtcttgcactaaactatgctaa |
8094749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 120 - 192
Target Start/End: Original strand, 53171395 - 53171467
Alignment:
| Q |
120 |
aaagactaggcgaagctggtcttgcactgcactatgctaacattatcaatcagataaatgtgatagtaagttt |
192 |
Q |
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| T |
53171395 |
aaagactaggtgaagctggtcttgcactacactatgccaacatgatcaatcagatatatatgattgtaagttt |
53171467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 477 - 554
Target Start/End: Original strand, 53171562 - 53171639
Alignment:
| Q |
477 |
cttcctccaaatatgagggacacactgtataaaggtttgcccaataatattaagaatgcccttccttcgcggctgcaa |
554 |
Q |
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| T |
53171562 |
cttcctccaaatacgagggacacattatatcaaggtttgccaaacagtattaagagtgcccttccatctcggttgcaa |
53171639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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