View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6437_low_17 (Length: 212)
Name: NF6437_low_17
Description: NF6437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6437_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 19 - 192
Target Start/End: Complemental strand, 44901183 - 44901010
Alignment:
| Q |
19 |
attactctcctacggtcttcttccaccacctcattcattacatctttaaaccaatcaaagaaaccttgtttcgccgccacccaataaaaataagcctttc |
118 |
Q |
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| T |
44901183 |
attactctcctacggtcttcttccaccacctcattcattacatctttaaaccaatcaaagaaaccttgtttcgccgccacccaataaaaataagcctttc |
44901084 |
T |
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| Q |
119 |
tagttttgaagttatttaaaccggttttcttgtgttgtgatgatcttggtgatttgccacctgttccctcttct |
192 |
Q |
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| T |
44901083 |
tagttttgaagttatttaaaccggttttcttgcgttgtgatgatcttggtgatttgccacctgttccctcttct |
44901010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 44 - 188
Target Start/End: Complemental strand, 44892505 - 44892361
Alignment:
| Q |
44 |
ccacctcattcattacatctttaaaccaatcaaagaaaccttgtttcgccgccacccaataaaaataagcctttctagttttgaagttatttaaaccggt |
143 |
Q |
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| T |
44892505 |
ccacctcatttattacccctttaaaccaatcaaagaaaccttgttcaccagccatccagtaaaaataagcctttctagttttaaagttactcaaatcagt |
44892406 |
T |
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| Q |
144 |
tttcttgtgttgtgatgatcttggtgatttgccacctgttccctc |
188 |
Q |
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| T |
44892405 |
tttcttgtgttctgatggtcttgatgatttaccaattgttccctc |
44892361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 44917933 - 44917764
Alignment:
| Q |
19 |
attactctcctacggtcttcttccaccacctcattcattacatctttaaaccaatcaaagaaaccttgtttcgccgccacccaataaaaataagcctttc |
118 |
Q |
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||||||| |||| | || ||||| |||||||||||||||| |||||||||||||||| |||| |||| | ||||| |||||||||||| | |
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| T |
44917933 |
attactcccctatgatcatcttcagccacctcattcattactcctttaaaccaatcaaatgaaccctgttctctagtaacccagtaaaaataagccctct |
44917834 |
T |
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| Q |
119 |
tagttttgaagttatttaaaccggttttcttgtgttgtgatgatcttggtgatttgccacctgttccctc |
188 |
Q |
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||||||| ||| |||| ||||||||| ||||||||||||||| ||| |||||||| | || ||||||||| |
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| T |
44917833 |
tagttttaaagctattcaaaccggttctcttgtgttgtgatggtctcggtgatttactacttgttccctc |
44917764 |
T |
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