View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6437_low_2 (Length: 491)
Name: NF6437_low_2
Description: NF6437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6437_low_2 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 19 - 480
Target Start/End: Complemental strand, 19809740 - 19809280
Alignment:
| Q |
19 |
caaagagattcacagaaaacttatacattagctatattttccaatttggctccatttgtgttcaactcgatgtaccacttagaattcattatccataata |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19809740 |
caaagagattcacagaaaacttatacattagctatattttccaatttggctccatttgtgttcaactcgatgtaccacttagaattcattatccataata |
19809641 |
T |
|
| Q |
119 |
caacactacatggacattccaggagcaatgagacatactcaacggttccatgttcattcaaagaaccagacaccaaattaagaaaacagatgtgaaacac |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
19809640 |
caacactacatggacattccaggagcaatgagacatactcaacggttccatgttcatccaaagaaccagacaccaaattaagaaaacagatgtgaaacac |
19809541 |
T |
|
| Q |
219 |
ggttctaagattccacattctcaaattaggatataaaatttgaacctcatcaagaacatttgtataatcacacaaatatgttgtatataatattttctca |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
19809540 |
ggttctaagattccacattctcaaattaggatataaaatttgaacctcatcaagaacatttgtataatcacacaaatatgttgtatataattttttctca |
19809441 |
T |
|
| Q |
319 |
agcatcaagagataacactaacaaaatgggttcaagagaagatccataacaaacctcataagagttacacatgtaatcaacattctatcaatttctataa |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19809440 |
agcatcaagagataacactaacaaaatgggttcaagagaagatccataa-aaacctcataagagttacacatgtaatcaacattctatcaatttctataa |
19809342 |
T |
|
| Q |
419 |
gtacacagtttacactgattttcaacaagaataaaaagccaaaacaacacaccataaatgat |
480 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19809341 |
gtacacagtttacactgattttcaacaagaataaaaagccaaaacaacacaccataaatgat |
19809280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 386; Significance: 0; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 19 - 480
Target Start/End: Complemental strand, 39139484 - 39139023
Alignment:
| Q |
19 |
caaagagattcacagaaaacttatacattagctatattttccaatttggctccatttgtgttcaactcgatgtaccacttagaattcattatccataata |
118 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39139484 |
caaagaaattcacagaacacttatacattagctatattttccaacttggctccatttgtgttcaactcgatgtaccacttagaattcattatccataata |
39139385 |
T |
|
| Q |
119 |
caacactacatggacattccaggagcaatgagacatactcaacggttccatgttcattcaaagaaccagacaccaaattaagaaaacagatgtgaaacac |
218 |
Q |
| |
|
|||||| ||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39139384 |
taacactgcatggacgttccaggagcaacgagacatactcaacggttccatgttcatccaaagaaccagacaccaaattaagaaaacagatgtgaaacac |
39139285 |
T |
|
| Q |
219 |
ggttctaagattccacattctcaaattaggatataaaatttgaacctcatcaagaacatttgtataatcacacaaatatgttgtatataatattttctca |
318 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||| |
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|
| T |
39139284 |
ggttctaagagtccacattctcaaaataggatataaaatttgaacctcatcaagaacatttgtataatcacataaatatgttgcatataattttttctca |
39139185 |
T |
|
| Q |
319 |
agcatcaagagataacactaacaaaatgggttcaagagaagatccataacaaacctcataagagttacacatgtaatcaacattctatcaatttctataa |
418 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
39139184 |
agcatcaagagataacactaacaatatggattcaagagaagatccataacaaacctcataagagttacacatgtaatcaacattctatcaatttctttaa |
39139085 |
T |
|
| Q |
419 |
gtacacagtttacactgattttcaacaagaataaaaagccaaaacaacacaccataaatgat |
480 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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|
| T |
39139084 |
gttcacagtttacactgattttcaacaagaataaaaaggcaaaacaacacacaataaatgat |
39139023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 41 - 395
Target Start/End: Original strand, 39472123 - 39472500
Alignment:
| Q |
41 |
atacattagctatattttccaatttggctccatttgtgttcaactcgatgtaccactta-gaattcattatccataatacaacactacatggacattcca |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
39472123 |
atacattagctatattttccaatttggctccacttgtgttcaactcaatgtaccacttaagaattcattatccataatacaacactacaaggacattcca |
39472222 |
T |
|
| Q |
140 |
ggagcaatgagacatactcaacggttccatgttcattcaaagaaccagacaccaaattaagaaaacagatgtg----------------------aaaca |
217 |
Q |
| |
|
|||| | |||| |||| | ||||||||||| ||||| |||||||||||||| | ||||||||||||||||||| ||||| |
|
|
| T |
39472223 |
ggagaactgagtcatatttaacggttccatattcatccaaagaaccagacatc-aattaagaaaacagatgtgaaacacttgcaaaccatatttcaaaca |
39472321 |
T |
|
| Q |
218 |
cggttctaagattccacattctcaaattaggatataaaatttgaacctcatcaagaacatttgtataatcacacaaatatgttgtatataa-tattttct |
316 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| || | |||| |||| ||||| ||| ||||||||||||| ||| ||| | |||||| |
|
|
| T |
39472322 |
cggttctaagattccacattctcaaaataggatataaaattcaaaaatattcaataacaattgtacaatgacacaaatatgttttatttaatttttttct |
39472421 |
T |
|
| Q |
317 |
caagcatcaagagataacactaacaaaatgggttcaagagaagatccataacaaacctcataagagttacacatgtaat |
395 |
Q |
| |
|
||||||||| || ||||||| ||| ||| || |||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
39472422 |
caagcatcagcagctaacacttgcaatttggattttagagaatatccataacaaacctcataagagttacaaatgtaat |
39472500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 27 - 218
Target Start/End: Complemental strand, 39453522 - 39453330
Alignment:
| Q |
27 |
ttcacagaaaactt---atacattagctatattttccaatttggctccatttgtgttcaactcgatgtaccactta-gaattcattatccataatacaac |
122 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| | ||||| |||| || |||||||||||| ||||| || | ||||| |||| |
|
|
| T |
39453522 |
ttcacagaaaacttgaaatacattagctatattttccaatttggctcaacttgtgatcaattcaatgtaccacttaagaattaat---cgataatccaac |
39453426 |
T |
|
| Q |
123 |
actacatggacattccaggagcaatgagacatactcaacggttccatgttcattcaaagaaccagacaccaaattaagaaaacagatgtgaaacac |
218 |
Q |
| |
|
||||| |||||||||||||||||||||||| | | |||||||||| ||| | ||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
39453425 |
tctacaaggacattccaggagcaatgagacacatttaacggttccaagttactccaaagaagcagacaccaaattaagaaaacagatgagaaacac |
39453330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 24 - 215
Target Start/End: Original strand, 39412485 - 39412681
Alignment:
| Q |
24 |
agattcacagaaaactt---atacattagctatattttccaatttggctccatttgtgttcaactcgatgtaccactt-agaattcattatccataatac |
119 |
Q |
| |
|
||||||||||||||||| || ||||||||||||| |||||||||||||| |||||||||| |||||||||||||| | ||||||||||||||||||| |
|
|
| T |
39412485 |
agattcacagaaaacttgaaatgtattagctatatttaccaatttggctccacttgtgttcaattcgatgtaccacttaataattcattatccataatac |
39412584 |
T |
|
| Q |
120 |
aacactac-atggacattccaggagcaatgagacatactcaacggttccatgttcattcaaagaaccagacaccaaattaagaaaacagatgtgaaa |
215 |
Q |
| |
|
||| |||| | |||||||| |||||||| | || | || ||||||| |||||| |||||||||| ||||||||| ||||||||| |||||||| |
|
|
| T |
39412585 |
aactctacaaaaaacattccaaaagcaatgataaatgtttaatggttccaagttcatccaaagaaccaaacaccaaataaagaaaacaaatgtgaaa |
39412681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 271 - 420
Target Start/End: Complemental strand, 39452618 - 39452469
Alignment:
| Q |
271 |
agaacatttgtataatcacacaaatatgttgtatataatattttctcaagcatcaagagataacactaacaaaatgggttcaagagaagatccataacaa |
370 |
Q |
| |
|
|||||||||||| | ||||||||||||| || ||||||| ||||| |||||||||| || |||| | ||| || || ||||||||||||||||||| |
|
|
| T |
39452618 |
agaacatttgtacagtcacacaaatatgatgaatataattttttcccaagcatcaatagctaacggttgcaatattaatttaagagaagatccataacaa |
39452519 |
T |
|
| Q |
371 |
acctcataagagttacacatgtaatcaacattctatcaatttctataagt |
420 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||| || ||||||| ||||| |
|
|
| T |
39452518 |
acctaataagagttacacctgtaatcaacattcaattaatttctctaagt |
39452469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 51 - 218
Target Start/End: Complemental strand, 39153841 - 39153673
Alignment:
| Q |
51 |
tatattttccaatttggctccatttgtgttcaactcgatgtaccactta-gaattcattatccataatacaacactacatggacattccaggagcaatga |
149 |
Q |
| |
|
||||||||||| |||||||||| |||||||||| || ||| ||| |||| |||||||| |||||| || | | ||||| || ||||||||||||||||| |
|
|
| T |
39153841 |
tatattttccattttggctccacttgtgttcaattcaatgcaccgcttaagaattcataatccattatcaacctctacaagggcattccaggagcaatga |
39153742 |
T |
|
| Q |
150 |
gacatactcaacggttccatgttcattcaaagaaccagacaccaaattaagaaaacagatgtgaaacac |
218 |
Q |
| |
|
|||| | | || || |||| |||||| |||| ||||||| ||||| |||||||||| ||||||||||| |
|
|
| T |
39153741 |
gacacattaaatggctccaagttcatccaaataaccagataccaacttaagaaaacgaatgtgaaacac |
39153673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 211 - 319
Target Start/End: Original strand, 39412699 - 39412805
Alignment:
| Q |
211 |
tgaaacacggttctaagattccacattctcaaattaggatataaaatttgaacctcatcaagaacatttgtataatcacacaaatatgttgtatataata |
310 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||| ||||| ||||| |||| ||||| |||| |||||||| |||||||||||||||| |
|
|
| T |
39412699 |
tgaaacacggttctaagattcagcattctcaaagtaggatatcaaattcaaacctattcaaaaacatctgtacaatcacac--atatgttgtatataatt |
39412796 |
T |
|
| Q |
311 |
ttttctcaa |
319 |
Q |
| |
|
||||||||| |
|
|
| T |
39412797 |
ttttctcaa |
39412805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 380 - 451
Target Start/End: Complemental strand, 39153469 - 39153398
Alignment:
| Q |
380 |
gagttacacatgtaatcaacattctatcaatttctataagtacacagtttacactgattttcaacaagaata |
451 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| ||| |||||| | ||||||||| |||||||||| |
|
|
| T |
39153469 |
gagttacacaagtaatcaacattctatcaatttctattagttcacagtgtgcactgatttcaaacaagaata |
39153398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 138
Target Start/End: Original strand, 39420844 - 39420965
Alignment:
| Q |
20 |
aaagagattcacagaaa-actt---atacattagctatattttccaatttggctccatttgtgttcaactcgatgtaccac-ttagaattcattatccat |
114 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||||||| |||||||||| | ||||||| || ||||||||| | ||||||||| ||| || |
|
|
| T |
39420844 |
aaagagattcacagaaagacttgagatacattagctatattttccattttggctccact--tgttcaattcaatgtaccacgtaagaattcataatcgat |
39420941 |
T |
|
| Q |
115 |
aatacaacactacatggacattcc |
138 |
Q |
| |
|
||| |||| ||||| ||||||||| |
|
|
| T |
39420942 |
aatccaactctacaaggacattcc |
39420965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 211 - 314
Target Start/End: Complemental strand, 39153658 - 39153555
Alignment:
| Q |
211 |
tgaaacacggttctaagattccacattctcaaattaggatataaaatttgaacctcatcaagaacatttgtataatcacacaaatatgttgtatataata |
310 |
Q |
| |
|
||||||| | ||||||||||| | ||||||||| ||| |||| |||||||||| | ||||||||||| ||| ||||||||||||||| |||||||| |
|
|
| T |
39153658 |
tgaaacatgtttctaagattcaaaattctcaaaatagaatattaaatttgaacgtattcaagaacattcgtacgttcacacaaatatgttttatataatt |
39153559 |
T |
|
| Q |
311 |
tttt |
314 |
Q |
| |
|
|||| |
|
|
| T |
39153558 |
tttt |
39153555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 378 - 429
Target Start/End: Original strand, 39472515 - 39472566
Alignment:
| Q |
378 |
aagagttacacatgtaatcaacattctatcaatttctataagtacacagttt |
429 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||| |||||||| |
|
|
| T |
39472515 |
aagagttacacatgtaatcaacattctatcaatatagataagttcacagttt |
39472566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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