View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6437_low_3 (Length: 404)

Name: NF6437_low_3
Description: NF6437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6437_low_3
NF6437_low_3
[»] chr3 (16 HSPs)
chr3 (1-286)||(55146537-55146822)
chr3 (1-261)||(30715874-30716134)
chr3 (304-404)||(55146366-55146466)
chr3 (4-209)||(48161526-48161745)
chr3 (176-261)||(38108772-38108857)
chr3 (186-261)||(51011551-51011625)
chr3 (179-262)||(44846955-44847038)
chr3 (181-227)||(44810660-44810706)
chr3 (181-266)||(18912259-18912344)
chr3 (157-261)||(33942704-33942808)
chr3 (179-262)||(44006394-44006477)
chr3 (186-261)||(52560282-52560357)
chr3 (181-262)||(2286026-2286107)
chr3 (178-227)||(48165252-48165301)
chr3 (181-225)||(14336936-14336980)
chr3 (179-227)||(42993464-42993512)
[»] chr4 (13 HSPs)
chr4 (1-262)||(39390706-39390981)
chr4 (157-261)||(22438553-22438657)
chr4 (179-261)||(43036469-43036551)
chr4 (180-261)||(9981107-9981188)
chr4 (181-225)||(25411667-25411711)
chr4 (181-261)||(35430497-35430577)
chr4 (179-227)||(36505759-36505807)
chr4 (178-261)||(2333821-2333904)
chr4 (179-262)||(32715268-32715351)
chr4 (154-261)||(39388410-39388517)
chr4 (179-261)||(40729905-40729987)
chr4 (157-226)||(22436072-22436141)
chr4 (179-227)||(47110744-47110792)
[»] chr6 (4 HSPs)
chr6 (1-261)||(5613795-5614069)
chr6 (1-67)||(1259885-1259951)
chr6 (77-261)||(2435148-2435332)
chr6 (146-259)||(22868367-22868480)
[»] chr5 (8 HSPs)
chr5 (1-262)||(19870451-19870727)
chr5 (1-225)||(9042247-9042484)
chr5 (148-237)||(37979849-37979938)
chr5 (148-261)||(23067628-23067741)
chr5 (179-262)||(43294195-43294278)
chr5 (181-225)||(12075899-12075943)
chr5 (179-259)||(36759194-36759274)
chr5 (130-261)||(26747694-26747825)
[»] chr7 (14 HSPs)
chr7 (1-243)||(46529309-46529563)
chr7 (178-262)||(43349575-43349658)
chr7 (130-262)||(10555021-10555153)
chr7 (146-261)||(1299033-1299148)
chr7 (179-225)||(27543002-27543048)
chr7 (152-225)||(3614417-3614490)
chr7 (184-261)||(3615322-3615399)
chr7 (126-227)||(31594251-31594352)
chr7 (153-261)||(41964757-41964865)
chr7 (179-227)||(47317782-47317830)
chr7 (211-261)||(46790695-46790745)
chr7 (148-236)||(5569294-5569382)
chr7 (179-227)||(47944385-47944433)
chr7 (179-227)||(47949815-47949863)
[»] chr1 (10 HSPs)
chr1 (148-261)||(38043386-38043499)
chr1 (150-227)||(15291184-15291261)
chr1 (130-261)||(50915285-50915416)
chr1 (181-258)||(18239454-18239531)
chr1 (130-227)||(18243381-18243478)
chr1 (130-204)||(35585160-35585234)
chr1 (148-261)||(31387919-31388032)
chr1 (153-202)||(37504964-37505013)
chr1 (179-227)||(37770228-37770276)
chr1 (181-261)||(45471404-45471484)
[»] scaffold0688 (1 HSPs)
scaffold0688 (119-227)||(5853-5961)
[»] chr2 (6 HSPs)
chr2 (179-261)||(31854231-31854313)
chr2 (147-261)||(34456935-34457049)
chr2 (1-67)||(40614548-40614614)
chr2 (185-258)||(44070750-44070823)
chr2 (179-261)||(40614739-40614822)
chr2 (179-261)||(31500780-31500862)
[»] scaffold0530 (1 HSPs)
scaffold0530 (181-225)||(7628-7672)
[»] scaffold0146 (1 HSPs)
scaffold0146 (179-227)||(32324-32372)
[»] chr8 (7 HSPs)
chr8 (181-261)||(6253302-6253382)
chr8 (179-261)||(33073677-33073759)
chr8 (181-226)||(20086227-20086272)
chr8 (200-261)||(41270321-41270382)
chr8 (179-227)||(8037282-8037330)
chr8 (149-237)||(20477201-20477289)
chr8 (182-225)||(24689800-24689844)
[»] scaffold0325 (1 HSPs)
scaffold0325 (179-262)||(2812-2895)
[»] scaffold0013 (1 HSPs)
scaffold0013 (1-64)||(86730-86793)


Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 55146822 - 55146537
Alignment:
Q  1 ttgtgaattaattgatgaaatttgacgcaaattcgtgaaatacaagtttggagaaatttggaagttgagaaatcttgaaaatagaaaaatgagggttctg 100  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  55146822 ttgtgaattaattgatgaaatttggcgcaaattcgtgaagtacaagtttggagaaatttggaagttgagaaatctggaaaatggaaaaatgagggttctg 55146723  T
Q  101 ttcttggttattcgcagaacatagtggttgttaacaaccgcgggcttccagcggcagttaactggcggcgctttgaataacggtagttaactaccgttgg 200  Q
    |||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  55146722 ttcttgtttattcgcagaacgtagtggttgttaacaaccgtgggcttccagcggcagttaactgccggcgctttgaataacggtagttaactatcgttgg 55146623  T
Q  201 aggtatttatgtattttacttgtgtcagtatgaactttcctttttcaaaaaagcaattttcacaaacatttcctatatatatatat 286  Q
     ||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  55146622 gggtatttatgtattttaattgtgtcaataggaactttcctttttcaaaaaagcaattttcacaaacatttcctttatatatatat 55146537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 30716134 - 30715874
Alignment:
Q  1 ttgtgaattaattgatgaaatttgacgcaaattcgtgaaatacaagtttggagaaatttggaagttgagaaatcttgaaaatagaaaaatgagggttctg 100  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||    
T  30716134 ttgtgaattaattgatgaaatttggcgcaaattcgtgaagtacaagtttggagaaatttggaagttgagaaatctggaaaatggaaaaatgagggttatg 30716035  T
Q  101 ttcttggttattcgcagaacatagtggttgttaacaaccgcgggcttccagcggcagttaactggcggcgctttgaataacggtagttaactaccgttgg 200  Q
    |||||| ||||||||||||| ||| | ||||||||||| ||  ||||||||||||||||| ||| || ||||||| |||||||||||||||||||| |||    
T  30716034 ttcttgtttattcgcagaacgtagcgtttgttaacaactgctagcttccagcggcagttatctgccgacgctttggataacggtagttaactaccgctgg 30715935  T
Q  201 aggtatttatgtattttacttgtgtcagtatgaactttcctttttcaaaaaagcaattttc 261  Q
     |||||||||||||||||||||||||| || |||||||| ||| |||||||||||||||||    
T  30715934 gggtatttatgtattttacttgtgtcaataggaactttcatttgtcaaaaaagcaattttc 30715874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 304 - 404
Target Start/End: Complemental strand, 55146466 - 55146366
Alignment:
Q  304 gattgctatataaatttatcaaatcctcgtaatattttttattcatgaaaaattgacactnnnnnnnngagccaaagagggaagaaatgcatcagttctt 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||    
T  55146466 gattgctatataaatttatcaaatcctcgtaatattttttattcatgaaaaattgacactaaaaaaaagagccaaagagggaagaaatgcatcagttctt 55146367  T
Q  404 t 404  Q
    |    
T  55146366 t 55146366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 4 - 209
Target Start/End: Complemental strand, 48161745 - 48161526
Alignment:
Q  4 tgaattaattgatgaaatttgacgcaaattcgtgaaatacaagtttggagaaatttggaagttgaga--------------aatcttgaaaatagaaaaa 89  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||                ||| |||||| ||||||    
T  48161745 tgaattaattgatgaaatttggcgcaaattcgtgaagtacaagtttggagaaatttggaagttgtgattttagtgtttgtgtttctggaaaatggaaaaa 48161646  T
Q  90 tgagggttctgttcttggttattcgcagaacatagtggttgttaacaaccgcgggcttccagcggcagttaactggcggcgctttgaataacggtagtta 189  Q
    ||||||||| ||||||| |||||||||||||  || |||||||||| |||||    ||||||||||||||||| | ||||  |||| | |||||| ||||    
T  48161645 tgagggttccgttcttgtttattcgcagaactcagcggttgttaactaccgctaagttccagcggcagttaaccgccggcagtttggagaacggtggtta 48161546  T
Q  190 actaccgttggaggtattta 209  Q
    |||||||  |||||||||||    
T  48161545 actaccgccggaggtattta 48161526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 176 - 261
Target Start/End: Complemental strand, 38108857 - 38108772
Alignment:
Q  176 aataacggtagttaactaccgttggaggtatttatgtattttacttgtgtcagtatgaactttcctttttcaaaaaagcaattttc 261  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||||| || |||||||   || |||||||||||||||||    
T  38108857 aataacggtagttaactaccgctggaggtatttaagtattttacttgtgtcaataggaactttttattgtcaaaaaagcaattttc 38108772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 186 - 261
Target Start/End: Complemental strand, 51011625 - 51011551
Alignment:
Q  186 gttaactaccgttggaggtatttatgtattttacttgtgtcagtatgaactttcctttttcaaaaaagcaattttc 261  Q
    ||||||||||||| | |||||||||||||||||||||||||| || |||||||||||| ||| |||| ||||||||    
T  51011625 gttaactaccgtttggggtatttatgtattttacttgtgtcaataggaactttcctttctcacaaaa-caattttc 51011551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 262
Target Start/End: Complemental strand, 44847038 - 44846955
Alignment:
Q  179 aacggtagttaactaccgttggaggtatttatgtattttacttgtgtcagtatgaactttcctttttcaaaaaagcaattttca 262  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||| | | |||| ||| |  | ||| ||||||||||||||    
T  44847038 aacggtagttaactaccgctggaggtatttaagtattttacttgtgttaatgtgaagttttcaatgtcagaaaagcaattttca 44846955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 44810660 - 44810706
Alignment:
Q  181 cggtagttaactaccgttggaggtatttatgtattttacttgtgtca 227  Q
    |||||||||||||||| |||||||||||| ||||||||||| |||||    
T  44810660 cggtagttaactaccgctggaggtatttaagtattttacttttgtca 44810706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 266
Target Start/End: Original strand, 18912259 - 18912344
Alignment:
Q  181 cggtagttaactaccgttggaggtatttatgtattttacttgtgtcagtatgaactttcctttttcaaaaaagcaattttcacaaa 266  Q
    |||||||||||  ||| |||||| ||||  ||||||||||||||||| |||||| ||| |  | ||| ||||||||||||||||||    
T  18912259 cggtagttaacggccgctggaggcattttagtattttacttgtgtcaatatgaaattttcactgtcagaaaagcaattttcacaaa 18912344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 261
Target Start/End: Original strand, 33942704 - 33942808
Alignment:
Q  157 gttaactggcggcgctttgaataacggtagttaactaccgttggaggtatttatgtattttacttgtgtcagtatgaactttcctttttcaaaaaagcaa 256  Q
    |||||||| |||||||| |  ||||||  ||||||| ||||||| || | |||||||  |||||||||||| || ||| |||||| | ||| ||||||||    
T  33942704 gttaactgtcggcgcttaggctaacggctgttaactgccgttgggggcaattatgtaaattacttgtgtcaataggaagtttcctatgtcacaaaagcaa 33942803  T
Q  257 ttttc 261  Q
    |||||    
T  33942804 ttttc 33942808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 179 - 262
Target Start/End: Complemental strand, 44006477 - 44006394
Alignment:
Q  179 aacggtagttaactaccgttggaggtatttatgtattttacttgtgtcagtatgaactttcctttttcaaaaaagcaattttca 262  Q
    |||||||||||||||||| ||| || ||||| ||||||||||| ||||| | |||| ||| |  | ||| ||||||||||||||    
T  44006477 aacggtagttaactaccgctgggggcatttaagtattttacttatgtcattgtgaaattttcaatgtcagaaaagcaattttca 44006394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 186 - 261
Target Start/End: Complemental strand, 52560357 - 52560282
Alignment:
Q  186 gttaactaccgttggaggtatttatgtattttacttgtgtcagtatgaactttcctttttcaaaaaagcaattttc 261  Q
    ||||||| ||| |||||| ||||| ||||||||||||||||| || |||  || | || |||||||||||||||||    
T  52560357 gttaactgccgctggaggcatttacgtattttacttgtgtcaataggaaggtttcattgtcaaaaaagcaattttc 52560282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 262
Target Start/End: Original strand, 2286026 - 2286107
Alignment:
Q  181 cggtagttaactaccgttggaggtatttatgtattttacttgtgtcagtatgaactttcctttttcaaaaaagcaattttca 262  Q
    ||||||||||| |||||||| || ||  |  |||||||| ||||||  |||||||||| || | ||||||||||||||||||    
T  2286026 cggtagttaacgaccgttgggggcataaacatattttacctgtgtctttatgaacttttctatgtcaaaaaagcaattttca 2286107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 48165252 - 48165301
Alignment:
Q  178 taacggtagttaactaccgttggaggtatttatgtattttacttgtgtca 227  Q
    ||||||| ||||||| |||||||||| ||||| ||||||||||| |||||    
T  48165252 taacggttgttaactgccgttggaggcatttacgtattttacttatgtca 48165301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 14336980 - 14336936
Alignment:
Q  181 cggtagttaactaccgttggaggtatttatgtattttacttgtgt 225  Q
    ||||||||||||||||||||| ||||||  |||||||| ||||||    
T  14336980 cggtagttaactaccgttggaagtattttagtattttatttgtgt 14336936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 42993464 - 42993512
Alignment:
Q  179 aacggtagttaactaccgttggaggtatttatgtattttacttgtgtca 227  Q
    |||||||||||| ||| | || ||||||||| |||||||||||||||||    
T  42993464 aacggtagttaaatactgctgaaggtatttaagtattttacttgtgtca 42993512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 2e-59; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 39390706 - 39390981
Alignment:
Q  1 ttgtgaattaattgatgaaatttgacgcaaattcgtgaaatacaagtttggagaaatttggaagttgagaaat--------------cttgaaaatagaa 86  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||  |              || |||||| |||    
T  39390706 ttgtgaattaattgatgaaatttggcgcaaattcgtgaagtacaagtttggagaaatttggaagttgtgattttagtgtttgtgtttctggaaaatggaa 39390805  T
Q  87 aaatgagggttctgttcttggttattcgcagaacatagtggttgttaacaaccgcgggcttccagcggcagttaactggcggcgctttgaataacggtag 186  Q
    |||||||||||||||||||| |||||||||||||  |  |||||||||||||||| | ||||||||||||||||| || ||||| |||| |||||||| |    
T  39390806 aaatgagggttctgttcttgtttattcgcagaacgcaacggttgttaacaaccgctgacttccagcggcagttaattgtcggcggtttggataacggttg 39390905  T
Q  187 ttaactaccgttggaggtatttatgtattttacttgtgtcagtatgaactttcctttttcaaaaaagcaattttca 262  Q
    |||||||||| | | |||||||| |||||||| |||||| | || |||||||||||| ||||||||||||||||||    
T  39390906 ttaactaccgctaggggtatttaagtattttatttgtgttaataggaactttcctttatcaaaaaagcaattttca 39390981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 157 - 261
Target Start/End: Original strand, 22438553 - 22438657
Alignment:
Q  157 gttaactggcggcgctttgaataacggtagttaactaccgttggaggtatttatgtattttacttgtgtcagtatgaactttcctttttcaaaaaagcaa 256  Q
    |||||||| |||||| ||   ||||| ||||||||||||| ||| |||||||||||||||||||||||||| || |||| ||||||| ||||||||||||    
T  22438553 gttaactgccggcgcctttcctaacgatagttaactaccgctgggggtatttatgtattttacttgtgtcaataggaacattcctttgtcaaaaaagcaa 22438652  T
Q  257 ttttc 261  Q
    |||||    
T  22438653 ttttc 22438657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 261
Target Start/End: Original strand, 43036469 - 43036551
Alignment:
Q  179 aacggtagttaactaccgttggaggtatttatgtattttacttgtgtcagtatgaactttcctttttcaaaaaagcaattttc 261  Q
    |||||||||||||||||| | | || ||||| ||||||||||||||||| | |||| |||  | | |||||||||||||||||    
T  43036469 aacggtagttaactaccgctaggggcatttaagtattttacttgtgtcattgtgaagttttttatgtcaaaaaagcaattttc 43036551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 180 - 261
Target Start/End: Complemental strand, 9981188 - 9981107
Alignment:
Q  180 acggtagttaactaccgttggaggtatttatgtattttacttgtgtcagtatgaactttcctttttcaaaaaagcaattttc 261  Q
    |||||| |||||||||| || ||| ||||| ||||||||||||||||| || ||| | | | || |||||||||||||||||    
T  9981188 acggtaattaactaccgctgaaggcatttacgtattttacttgtgtcaataggaagtattccttgtcaaaaaagcaattttc 9981107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 25411667 - 25411711
Alignment:
Q  181 cggtagttaactaccgttggaggtatttatgtattttacttgtgt 225  Q
    |||||||||||||||| |||||||||||  |||||||||||||||    
T  25411667 cggtagttaactaccgctggaggtattttagtattttacttgtgt 25411711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 261
Target Start/End: Complemental strand, 35430577 - 35430497
Alignment:
Q  181 cggtagttaactaccgttggaggtatttatgtattttacttgtgtcagtatgaactttcctttttcaaaaaagcaattttc 261  Q
    |||||||||||||||| ||  || ||  ||||||||||||||||||  |||||| ||| || | |||||||||||||||||    
T  35430577 cggtagttaactaccgctgagggcataaatgtattttacttgtgtctttatgaaattttctatgtcaaaaaagcaattttc 35430497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 36505807 - 36505759
Alignment:
Q  179 aacggtagttaactaccgttggaggtatttatgtattttacttgtgtca 227  Q
    |||||||||||||||||| ||| |||||||| |||||||| ||||||||    
T  36505807 aacggtagttaactaccgctgggggtatttaagtattttatttgtgtca 36505759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 2333821 - 2333904
Alignment:
Q  178 taacggtagttaactaccgttggaggtatttatgtattttacttgtgtcagtatgaactttcctttttcaaaaaagcaattttc 261  Q
    ||||||| |||||| |||||||| || ||||| ||||||||||||||||| | |||| |||  | | ||| |||||||||||||    
T  2333821 taacggttgttaacaaccgttgggggcatttaagtattttacttgtgtcattgtgaagttttttatgtcagaaaagcaattttc 2333904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 179 - 262
Target Start/End: Complemental strand, 32715351 - 32715268
Alignment:
Q  179 aacggtagttaactaccgttggaggtatttatgtattttacttgtgtcagtatgaactttcctttttcaaaaaagcaattttca 262  Q
    |||||||||||||||||| ||||||  |||  |||  ||| |||||||| || ||| |||||| | ||||||||||||||||||    
T  32715351 aacggtagttaactaccgctggaggctttttagtaaattatttgtgtcaataggaagtttcctatgtcaaaaaagcaattttca 32715268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 154 - 261
Target Start/End: Complemental strand, 39388517 - 39388410
Alignment:
Q  154 gcagttaactggcggcgctttgaataacggtagttaactaccgttggaggtatttatgtattttacttgtgtcagtatgaactttcctttttcaaaaaag 253  Q
    ||||||||||| ||||| |||| | |||||| |||||||| || |||| | ||||| ||| ||||||||||||| |  ||||||| |  | | |||||||    
T  39388517 gcagttaactgccggcggtttgcagaacggtggttaactatcgctggaagcatttaagtaatttacttgtgtcaattggaacttttcaatgttaaaaaag 39388418  T
Q  254 caattttc 261  Q
    ||||||||    
T  39388417 caattttc 39388410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 261
Target Start/End: Original strand, 40729905 - 40729987
Alignment:
Q  179 aacggtagttaactaccgttggaggtatttatgtattttacttgtgtcagtatgaactttcctttttcaaaaaagcaattttc 261  Q
    |||||||||||| ||||| ||| || ||||| ||||||||||||||||| | |||| ||| |  | ||| |||||||||||||    
T  40729905 aacggtagttaaataccgctggtggcatttaagtattttacttgtgtcattgtgaagttttcaatgtcagaaaagcaattttc 40729987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 22436141 - 22436072
Alignment:
Q  157 gttaactggcggcgctttgaataacggtagttaactaccgttggaggtatttatgtattttacttgtgtc 226  Q
    |||||||| |||||| | |  |||||| |||||||| ||| |||||| ||||| ||||||||||||||||    
T  22436141 gttaactgccggcgcatagtctaacggcagttaactgccgctggaggcatttaagtattttacttgtgtc 22436072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 47110744 - 47110792
Alignment:
Q  179 aacggtagttaactaccgttggaggtatttatgtattttacttgtgtca 227  Q
    |||||||||||||||||| | | |||||||  |||||||||||||||||    
T  47110744 aacggtagttaactaccgctaggggtatttcagtattttacttgtgtca 47110792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 116; Significance: 7e-59; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 5614069 - 5613795
Alignment:
Q  1 ttgtgaattaattgatgaaatttgacgcaaattcgtgaaatacaagtttggagaaatttggaagttgagaaat--------------cttgaaaatagaa 86  Q
    ||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||| ||  |              || |||||| |||    
T  5614069 ttgtgaattaattgatgaaatttggtgcaaattcgtgaagtacaagtttggagaaatttggaagttgtgattttagtgtttgtgtttctggaaaatggaa 5613970  T
Q  87 aaatgagggttctgttcttggttattcgcagaacatagtggttgttaacaaccgcgggcttccagcggcagttaactggcggcgctttgaataacggtag 186  Q
    |||||||| || |||||||| |||||||||||||  || |||||||||||||||| | ||| |||||||||||||||| ||||| |||| |||| |||||    
T  5613969 aaatgaggattatgttcttgtttattcgcagaacgcagcggttgttaacaaccgctgactttcagcggcagttaactgccggcggtttggataatggtag 5613870  T
Q  187 ttaactaccgttggaggtatttatgtattttacttgtgtcagtatgaactttcctttttcaaaaaagcaattttc 261  Q
    |||||||||| ||| |||||||| |||||||||||| |||| || |||||||||||| |||||||||||||||||    
T  5613869 ttaactaccgctgggggtatttaagtattttacttgggtcaataggaactttcctttgtcaaaaaagcaattttc 5613795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 1259885 - 1259951
Alignment:
Q  1 ttgtgaattaattgatgaaatttgacgcaaattcgtgaaatacaagtttggagaaatttggaagttg 67  Q
    ||||||||||||||| |||||| | |||||||||||| | || ||||||||||||||||||||||||    
T  1259885 ttgtgaattaattgaagaaattgggcgcaaattcgtggagtagaagtttggagaaatttggaagttg 1259951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 77 - 261
Target Start/End: Original strand, 2435148 - 2435332
Alignment:
Q  77 gaaaatagaaaaatgagggttctgttcttggttattcgcagaacatagtggttgttaacaaccgcgggcttccagcggcagttaactggcggcgctttga 176  Q
    |||||| ||||| || |||||||||||||| ||||||| |||||  |  ||| |||||| ||||| |  | |||||||||||||||||  | || ||||     
T  2435148 gaaaatggaaaagtgggggttctgttcttgtttattcgtagaactcaacggtagttaactaccgctgagtgccagcggcagttaactgctgccggtttgc 2435247  T
Q  177 ataacggtagttaactaccgttggaggtatttatgtattttacttgtgtcagtatgaactttcctttttcaaaaaagcaattttc 261  Q
    ||||| |||||||| |||||  ||||| ||||| | ||| || |||||||  |||||| |||  | | ||||||||| |||||||    
T  2435248 ataacagtagttaattaccgcgggaggcatttaagaattgtatttgtgtctttatgaagttttttatgtcaaaaaagtaattttc 2435332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 259
Target Start/End: Original strand, 22868367 - 22868480
Alignment:
Q  146 ttccagcggcagttaactggcggcgctttgaataacggtagttaactaccgttggaggtatttatgtattttacttgtgtcagtatgaactttccttttt 245  Q
    |||||||||  |||||||| |||||||| |  ||||||| ||||||| ||| | | || | |||||||  |||||||||||| || ||| ||| || | |    
T  22868367 ttccagcggttgttaactgccggcgcttaggctaacggttgttaactgccgctaggggaaattatgtaaattacttgtgtcaataggaagttttctatgt 22868466  T
Q  246 caaaaaagcaattt 259  Q
    ||||||||||||||    
T  22868467 caaaaaagcaattt 22868480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 19870727 - 19870451
Alignment:
Q  1 ttgtgaattaattgatgaaatttgacgcaaattcgtgaaatacaagtttggagaaatttggaagttgagaaat---------------cttgaaaataga 85  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||  ||  |               || ||||||  |    
T  19870727 ttgtgaattaattgatgaaatttggcgcaaattcgtgaagtacaagtttggagaaatttggaagttatgattttagtgttttgtgtttctggaaaatgaa 19870628  T
Q  86 aaaatgagggttctgttcttggttattcgcagaacatagtggttgttaacaaccgcgggcttccagcggcagttaactggcggcgctttgaataacggta 185  Q
    ||||||||||||||||||||| ||||| |||||||  ||  |||||| |||||||  | |||||||||||||||||||| ||||| |||  ||||||||     
T  19870627 aaaatgagggttctgttcttgtttattagcagaacgcagcagttgtttacaaccgttgacttccagcggcagttaactgtcggcggtttagataacggtt 19870528  T
Q  186 gttaactaccgttggaggtatttatgtattttacttgtgtcagtatgaactttcctttttcaaaaaagcaattttca 262  Q
    |||||||||||  |  |||||||| ||||||||||||||||| ||  ||||||||||| ||||||||||||||||||    
T  19870527 gttaactaccgcggagggtatttaagtattttacttgtgtcaatagtaactttcctttgtcaaaaaagcaattttca 19870451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 9042247 - 9042484
Alignment:
Q  1 ttgtgaattaattgatgaaatttgacgcaaattcgtgaaatacaagtttggagaaatttggaagttgaga--------------aatcttgaaaatagaa 86  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||                ||| |||||| |||    
T  9042247 ttgtgaattaattgatgaaatttggcgcaaattcgtgaagtacaagtttggagaaatttggaagttgtgattttagtgttagtgtttctggaaaatggaa 9042346  T
Q  87 aaatgagggttctgttcttggttattcgcagaacatagtggttgttaacaaccgcgggcttccagcggcagttaactggcggcgctttgaataacggtag 186  Q
    ||||||||| |||||||||| |||||| || |||  || |||||||||| || |  |  ||||||||||||||||||| ||||| |||| | ||||||||    
T  9042347 aaatgaggg-tctgttcttgtttattcacataactcagcggttgttaactactgttgagttccagcggcagttaactgccggcggtttggagaacggtag 9042445  T
Q  187 ttaactaccgttggaggtatttatgtattttacttgtgt 225  Q
    |||||||||| ||| ||||||||  ||||||||||||||    
T  9042446 ttaactaccgctgggggtatttaaatattttacttgtgt 9042484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 148 - 237
Target Start/End: Complemental strand, 37979938 - 37979849
Alignment:
Q  148 ccagcggcagttaactggcggcgctttgaataacggtagttaactaccgttggaggtatttatgtattttacttgtgtcagtatgaactt 237  Q
    ||||||||||||||||| |||||| | |  ||||||| ||||||| ||| ||| |||||||| ||||||||||||||||| | |||||||    
T  37979938 ccagcggcagttaactgtcggcgcatggcctaacggtcgttaactgccgctgggggtatttaggtattttacttgtgtcaatgtgaactt 37979849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 261
Target Start/End: Original strand, 23067628 - 23067741
Alignment:
Q  148 ccagcggcagttaactggcggcgctttgaataacggtagttaactaccgttggaggtatttatgtattttacttgtgtcagtatgaactttcctttttca 247  Q
    |||||| || ||||||| ||||| |||| | |||||||||||||||||| ||||||  |||| ||| ||||||||||||| |  ||||||| |  | |||    
T  23067628 ccagcgacatttaactgccggcgatttgcagaacggtagttaactaccgctggaggcgtttaagtaatttacttgtgtcaattggaacttttcaatgtca 23067727  T
Q  248 aaaaagcaattttc 261  Q
     |||||||||||||    
T  23067728 gaaaagcaattttc 23067741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 262
Target Start/End: Complemental strand, 43294278 - 43294195
Alignment:
Q  179 aacggtagttaactaccgttggaggtatttatgtattttacttgtgtcagtatgaactttcctttttcaaaaaagcaattttca 262  Q
    |||||||||||||||||| | |||| ||| | ||||||||||||||||  |||||| ||| || | |||||||| |||||||||    
T  43294278 aacggtagttaactaccgctagaggcattaacgtattttacttgtgtctttatgaagttttctatgtcaaaaaaacaattttca 43294195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 12075943 - 12075899
Alignment:
Q  181 cggtagttaactaccgttggaggtatttatgtattttacttgtgt 225  Q
    |||||||||||||||| |||||||||||  |||||||||||||||    
T  12075943 cggtagttaactaccgctggaggtattttagtattttacttgtgt 12075899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 259
Target Start/End: Original strand, 36759194 - 36759274
Alignment:
Q  179 aacggtagttaactaccgttggaggtatttatgtattttacttgtgtcagtatgaactttcctttttcaaaaaagcaattt 259  Q
    |||||||||||||||||| ||| || ||| | ||||||||||||||||| | |||| |||  | | |||||||||||||||    
T  36759194 aacggtagttaactaccgctgggggcattcaggtattttacttgtgtcaatgtgaagttttttatgtcaaaaaagcaattt 36759274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 130 - 261
Target Start/End: Complemental strand, 26747825 - 26747694
Alignment:
Q  130 gttaacaaccgcgggcttccagcggcagttaactggcggcgctttgaataacggtagttaactaccgttggaggtatttatgtattttacttgtgtcagt 229  Q
    |||||||||||| |  | ||||||||| ||||||| |||||| |     |||||| ||||||||||| ||||||  |||  |||  |||||||||||| |    
T  26747825 gttaacaaccgctgagtcccagcggcaattaactgtcggcgcatcttccaacggttgttaactaccgctggaggctttttagtaaattacttgtgtcaat 26747726  T
Q  230 atgaactttcctttttcaaaaaagcaattttc 261  Q
    | ||| |||||| | |||||||||||||||||    
T  26747725 aggaagtttcctatgtcaaaaaagcaattttc 26747694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 46529309 - 46529563
Alignment:
Q  1 ttgtgaattaattgatgaaatttgacgcaaattcgtgaaatacaagtttggagaaatttggaagttgagaaat--------------cttgaaaatagaa 86  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |  |              ||  ||||| |||    
T  46529309 ttgtgaattaattgatgaaatttagcgcaaattcgtgaaatacaagtttggagaaatttggaagttgaaattttagtgtttgtgtttctgcaaaatggaa 46529408  T
Q  87 aaatgagggttctgttcttggttattcgcagaacatagtggttgttaacaaccgcgggcttccagcggcagttaactggcggcgctttgaataacggtag 186  Q
    |||||||||||||||||| | |||||| |||||| ||  |||||||||||||||| | |  ||||||||||| ||||| ||||| ||| |||||||||||    
T  46529409 aaatgagggttctgttctcgtttattcacagaacgtaacggttgttaacaaccgctgac-cccagcggcagtcaactgccggcggtttaaataacggtag 46529507  T
Q  187 ttaactaccgttggaggtatttatgtattttacttgtgtcagtatgaactttccttt 243  Q
    ||||||| | | ||| ||||||||||||||||||| ||||| |||||||||||||||    
T  46529508 ttaacta-catcggatgtatttatgtattttacttatgtcaatatgaactttccttt 46529563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 178 - 262
Target Start/End: Complemental strand, 43349658 - 43349575
Alignment:
Q  178 taacggtagttaactaccgttggaggtatttatgtattttacttgtgtcagtatgaactttcctttttcaaaaaagcaattttca 262  Q
    |||||||||||||| |||| ||| | |||| ||||||||||||||||||| ||  ||||||||||| ||||||||||||||||||    
T  43349658 taacggtagttaaccaccgctgg-gatattgatgtattttacttgtgtcaatagaaactttcctttgtcaaaaaagcaattttca 43349575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 130 - 262
Target Start/End: Original strand, 10555021 - 10555153
Alignment:
Q  130 gttaacaaccgcgggcttccagcggcagttaactggcggcgctttgaataacggtagttaactaccgttggaggtatttatgtattttacttgtgtcagt 229  Q
    |||||||||||| ||   ||||||||||||||||| |||||| | |  ||||||| ||||||| ||||||| |  ||||| ||||||||||||||||| |    
T  10555021 gttaacaaccgctggaagccagcggcagttaactgtcggcgcatggcctaacggttgttaactgccgttggggacatttaggtattttacttgtgtcaat 10555120  T
Q  230 atgaactttcctttttcaaaaaagcaattttca 262  Q
     |||||||  |  | ||| ||||||||||||||    
T  10555121 gtgaacttatcaatgtcagaaaagcaattttca 10555153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 146 - 261
Target Start/End: Original strand, 1299033 - 1299148
Alignment:
Q  146 ttccagcggcagttaactggcggcgctttgaataacggtagttaactaccgttggaggtatttatgtattttacttgtgtcagtatgaactttccttttt 245  Q
    |||||||||  |||||||| ||||||||     |||||||||||||||||| |||||| | |||| ||  ||| |||||||| || ||| |||||| | |    
T  1299033 ttccagcggttgttaactgtcggcgcttcttccaacggtagttaactaccgctggaggcaattatatacattatttgtgtcaataggaagtttcctatgt 1299132  T
Q  246 caaaaaagcaattttc 261  Q
    ||||||||||||||||    
T  1299133 caaaaaagcaattttc 1299148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 27543048 - 27543002
Alignment:
Q  179 aacggtagttaactaccgttggaggtatttatgtattttacttgtgt 225  Q
    ||||||||||||||||| ||||||| ||||| |||||||||||||||    
T  27543048 aacggtagttaactaccattggaggcatttaagtattttacttgtgt 27543002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 152 - 225
Target Start/End: Complemental strand, 3614490 - 3614417
Alignment:
Q  152 cggcagttaactggcggcgctttgaataacggtagttaactaccgttggaggtatttatgtattttacttgtgt 225  Q
    |||| |||||||| || || |||| | |||||||||||||||||| ||| || ||||| |||||||||||||||    
T  3614490 cggctgttaactgccgccggtttgcagaacggtagttaactaccgctgggggcatttacgtattttacttgtgt 3614417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 184 - 261
Target Start/End: Original strand, 3615322 - 3615399
Alignment:
Q  184 tagttaactaccgttggaggtatttatgtattttacttgtgtcagtatgaactttcctttttcaaaaaagcaattttc 261  Q
    ||||||||||||||||| || ||||| |||||||| |||||||| || ||| | | | || |||||||||||||||||    
T  3615322 tagttaactaccgttgggggcatttacgtattttatttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 3615399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 126 - 227
Target Start/End: Original strand, 31594251 - 31594352
Alignment:
Q  126 ggttgttaacaaccgcgggcttccagcggcagttaactggcggcgctttgaataacggtagttaactaccgttggaggtatttatgtattttacttgtgt 225  Q
    ||||||||||||||||  |  |||| ||| ||||||||| |||||| |    ||||||| |||||| |||||||| |  |||||||||||||||||||||    
T  31594251 ggttgttaacaaccgctagactccaacgggagttaactgccggcgcatgtcctaacggttgttaacaaccgttggggacatttatgtattttacttgtgt 31594350  T
Q  226 ca 227  Q
    ||    
T  31594351 ca 31594352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 261
Target Start/End: Original strand, 41964757 - 41964865
Alignment:
Q  153 ggcagttaactggcggcgctttgaataacggtagttaactaccgttggaggtatttatgtattttacttgtgtcagtatgaactttcctttttcaaaaaa 252  Q
    |||||||||||| ||||| |||| |||||||||||||||||||| ||| |   |||| ||| ||||||| ||||| |  ||||||| |  | ||| ||||    
T  41964757 ggcagttaactgtcggcggtttgcataacggtagttaactaccgctggggacgtttaagtaatttacttatgtcaattggaacttttcaatgtcagaaaa 41964856  T
Q  253 gcaattttc 261  Q
    |||||||||    
T  41964857 gcaattttc 41964865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 47317782 - 47317830
Alignment:
Q  179 aacggtagttaactaccgttggaggtatttatgtattttacttgtgtca 227  Q
    |||||||||||||||||| ||| || ||||| |||||||||||||||||    
T  47317782 aacggtagttaactaccgctgggggcatttaagtattttacttgtgtca 47317830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 261
Target Start/End: Complemental strand, 46790745 - 46790695
Alignment:
Q  211 gtattttacttgtgtcagtatgaactttcctttttcaaaaaagcaattttc 261  Q
    ||||||||||||||||  |||||||||| || | |||||||||||||||||    
T  46790745 gtattttacttgtgtctttatgaacttttctatgtcaaaaaagcaattttc 46790695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 5569294 - 5569382
Alignment:
Q  148 ccagcggcagttaactggcggcgctttgaataacggtagttaactaccgttggaggtatttatgtattttacttgtgtcagtatgaact 236  Q
    |||||||| ||||||||  | || |||| | |||||||||||||||||| |   | |||||| ||||||||||||||||| || |||||    
T  5569294 ccagcggctgttaactgttgccggtttgcagaacggtagttaactaccgctaaggatatttacgtattttacttgtgtcaataggaact 5569382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 47944385 - 47944433
Alignment:
Q  179 aacggtagttaactaccgttggaggtatttatgtattttacttgtgtca 227  Q
    |||||| |||||| |||||||| | |||||| |||||||||||||||||    
T  47944385 aacggttgttaacaaccgttggggatatttaagtattttacttgtgtca 47944433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 47949815 - 47949863
Alignment:
Q  179 aacggtagttaactaccgttggaggtatttatgtattttacttgtgtca 227  Q
    |||||| |||||| |||||||| | |||||| |||||||||||||||||    
T  47949815 aacggttgttaacaaccgttggggatatttaagtattttacttgtgtca 47949863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 148 - 261
Target Start/End: Complemental strand, 38043499 - 38043386
Alignment:
Q  148 ccagcggcagttaactggcggcgctttgaataacggtagttaactaccgttggaggtatttatgtattttacttgtgtcagtatgaactttcctttttca 247  Q
    |||||||  |||||||| |||||| ||   ||||||||||||||||||| |||||||||||||||||||||||| ||||| || |||||||||||| |||    
T  38043499 ccagcggttgttaactgtcggcgcctttcctaacggtagttaactaccgctggaggtatttatgtattttacttctgtcaataggaactttcctttatca 38043400  T
Q  248 aaaaagcaattttc 261  Q
    ||||||||||||||    
T  38043399 aaaaagcaattttc 38043386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 15291261 - 15291184
Alignment:
Q  150 agcggcagttaactggcggcgctttgaataacggtagttaactaccgttggaggtatttatgtattttacttgtgtca 227  Q
    ||||||||||||||| ||||| |||| | |||||||||||||||||||||| ||  |||| ||| |||||||||||||    
T  15291261 agcggcagttaactgtcggcggtttgcagaacggtagttaactaccgttgggggcgtttaagtaatttacttgtgtca 15291184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 130 - 261
Target Start/End: Original strand, 50915285 - 50915416
Alignment:
Q  130 gttaacaaccgcgggcttccagcggcagttaactggcggcgctttgaataacggtagttaactaccgttggaggtatttatgtattttacttgtgtcagt 229  Q
    ||||||||| || ||  |||||||||||||||||| || ||| |||  ||||||| ||||||| ||| ||||||  |||| ||||||||||||||||| |    
T  50915285 gttaacaactgctggactccagcggcagttaactgccgacgcattgcctaacggttgttaactgccgctggaggcttttaggtattttacttgtgtcaat 50915384  T
Q  230 atgaactttcctttttcaaaaaagcaattttc 261  Q
      ||||||| |  | ||| |||||||||||||    
T  50915385 tggaacttttcaatgtcagaaaagcaattttc 50915416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 258
Target Start/End: Complemental strand, 18239531 - 18239454
Alignment:
Q  181 cggtagttaactaccgttggaggtatttatgtattttacttgtgtcagtatgaactttcctttttcaaaaaagcaatt 258  Q
    |||| ||||||| ||||||| |||||||  ||||||||||||||||| || ||| ||| || | ||||||||||||||    
T  18239531 cggttgttaactgccgttgggggtattttagtattttacttgtgtcaataggaagttttctatgtcaaaaaagcaatt 18239454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 130 - 227
Target Start/End: Original strand, 18243381 - 18243478
Alignment:
Q  130 gttaacaaccgcgggcttccagcggcagttaactggcggcgctttgaataacggtagttaactaccgttggaggtatttatgtattttacttgtgtca 227  Q
    |||||||||||| ||   |||||||||||||||||  | ||| | |  ||||||| ||||||| ||| ||| || |||||||||||||||||||||||    
T  18243381 gttaacaaccgctggaagccagcggcagttaactgcggacgcatggcctaacggttgttaactgccgctgggggcatttatgtattttacttgtgtca 18243478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 204
Target Start/End: Complemental strand, 35585234 - 35585160
Alignment:
Q  130 gttaacaaccgcgggcttccagcggcagttaactggcggcgctttgaataacggtagttaactaccgttggaggt 204  Q
    |||||||||||| ||   ||||||| ||||||||| |||||| | | |||||||| ||||||||||| |||||||    
T  35585234 gttaacaaccgctggaagccagcggtagttaactgtcggcgcatagcataacggttgttaactaccgctggaggt 35585160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 261
Target Start/End: Original strand, 31387919 - 31388032
Alignment:
Q  148 ccagcggcagttaactggcggcgctttgaataacggtagttaactaccgttggaggtatttatgtattttacttgtgtcagtatgaactttcctttttca 247  Q
    |||||||  |||||||| |||||||||    ||| || ||||||| ||| |||||| ||||  ||||||||||| ||||| |||||| ||| | || |||    
T  31387919 ccagcggttgttaactgtcggcgctttatccaacagttgttaactgccgctggaggcattttagtattttacttatgtcaatatgaaattttcattatca 31388018  T
Q  248 aaaaagcaattttc 261  Q
     |||||||||||||    
T  31388019 taaaagcaattttc 31388032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 37504964 - 37505013
Alignment:
Q  153 ggcagttaactggcggcgctttgaataacggtagttaactaccgttggag 202  Q
    |||||||||||| ||||||||| |  |||||||||||||||||| |||||    
T  37504964 ggcagttaactgccggcgctttaaccaacggtagttaactaccgctggag 37505013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 37770276 - 37770228
Alignment:
Q  179 aacggtagttaactaccgttggaggtatttatgtattttacttgtgtca 227  Q
    |||| ||||||||||||||||| || ||||| ||||||||| |||||||    
T  37770276 aacgatagttaactaccgttgggggcatttaagtattttacgtgtgtca 37770228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 261
Target Start/End: Complemental strand, 45471484 - 45471404
Alignment:
Q  181 cggtagttaactaccgttggaggtatttatgtattttacttgtgtcagtatgaactttcctttttcaaaaaagcaattttc 261  Q
    |||||||||||||||| ||| || ||  | ||||||||||| ||||  |||||| ||| || | |||||||||||||||||    
T  45471484 cggtagttaactaccgctgggggcataaacgtattttacttatgtctttatgaagttttctatgtcaaaaaagcaattttc 45471404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0688
Description:

Target: scaffold0688; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 119 - 227
Target Start/End: Original strand, 5853 - 5961
Alignment:
Q  119 acatagtggttgttaacaaccgcgggcttccagcggcagttaactggcggcgctttgaataacggtagttaactaccgttggaggtatttatgtatttta 218  Q
    |||||| ||| |||||||||||  ||  |||||||||||||||||| |||||| | |  ||||||| ||| ||||||| |||  | ||||| ||||||||    
T  5853 acatagcggtagttaacaaccgttggactccagcggcagttaactgccggcgcatggcctaacggttgtttactaccgctgggagcatttacgtatttta 5952  T
Q  219 cttgtgtca 227  Q
    |||||||||    
T  5953 cttgtgtca 5961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 261
Target Start/End: Original strand, 31854231 - 31854313
Alignment:
Q  179 aacggtagttaactaccgttggaggtatttatgtattttacttgtgtcagtatgaactttcctttttcaaaaaagcaattttc 261  Q
    ||||||| ||||||| || ||| | |||||  ||||||||||||||||| | |||| |||||| | |||||||||||||||||    
T  31854231 aacggtaattaactatcgctggggatatttcagtattttacttgtgtcattgtgaagtttcctatatcaaaaaagcaattttc 31854313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 261
Target Start/End: Complemental strand, 34457049 - 34456935
Alignment:
Q  147 tccagcggcagttaactggcggcgctttgaataacggtagttaactaccgttggaggtatttatgtattttacttgtgtcagtatgaactttcctttttc 246  Q
    |||||||||||||||||| || || ||||   |||| ||||||||||||| ||  || ||||| ||||||||||||||||  ||| || |||  | | ||    
T  34457049 tccagcggcagttaactgccgccgatttgcccaacgatagttaactaccgctgagggcatttaagtattttacttgtgtctttataaagttttttatgtc 34456950  T
Q  247 aaaaaagcaattttc 261  Q
    |||||||||||||||    
T  34456949 aaaaaagcaattttc 34456935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 40614548 - 40614614
Alignment:
Q  1 ttgtgaattaattgatgaaatttgacgcaaattcgtgaaatacaagtttggagaaatttggaagttg 67  Q
    |||||||||||| || || ||| | |||||||||||||| || ||||||||||||||||| ||||||    
T  40614548 ttgtgaattaatcgaagacattgggcgcaaattcgtgaagtaaaagtttggagaaatttgaaagttg 40614614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 258
Target Start/End: Complemental strand, 44070823 - 44070750
Alignment:
Q  185 agttaactaccgttggaggtatttatgtattttacttgtgtcagtatgaactttcctttttcaaaaaagcaatt 258  Q
    |||||||||||| |||||| ||||| ||||||||||||||||| || |||  || | || ||||||||||||||    
T  44070823 agttaactaccgctggaggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatt 44070750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 179 - 261
Target Start/End: Original strand, 40614739 - 40614822
Alignment:
Q  179 aacggtagttaactaccgttggaggtatttatgtattttacttgtgtcagtatgaactttcctt-tttcaaaaaagcaattttc 261  Q
    |||||||||||||||| | ||| || ||||| ||||||||||||||||  |||||| |||  || | |||||||||||||||||    
T  40614739 aacggtagttaactactgctgggggcatttaagtattttacttgtgtctttatgaagtttttttatgtcaaaaaagcaattttc 40614822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 261
Target Start/End: Complemental strand, 31500862 - 31500780
Alignment:
Q  179 aacggtagttaactaccgttggaggtatttatgtattttacttgtgtcagtatgaactttcctttttcaaaaaagcaattttc 261  Q
    |||||| ||||||| ||| || ||| ||||  ||||||||||||||||| |||||| ||| | || ||| |||||||||||||    
T  31500862 aacggttgttaactgccgctgaaggcattttagtattttacttgtgtcaatatgaagttttcattgtcagaaaagcaattttc 31500780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0530 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0530
Description:

Target: scaffold0530; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 7628 - 7672
Alignment:
Q  181 cggtagttaactaccgttggaggtatttatgtattttacttgtgt 225  Q
    |||||||||||||||||| | ||||||| ||||||||||||||||    
T  7628 cggtagttaactaccgttcggggtatttttgtattttacttgtgt 7672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 32324 - 32372
Alignment:
Q  179 aacggtagttaactaccgttggaggtatttatgtattttacttgtgtca 227  Q
    |||||||||||||||||| ||| || ||||| |||||||||||||||||    
T  32324 aacggtagttaactaccgctgggggcatttaagtattttacttgtgtca 32372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 261
Target Start/End: Complemental strand, 6253382 - 6253302
Alignment:
Q  181 cggtagttaactaccgttggaggtatttatgtattttacttgtgtcagtatgaactttcctttttcaaaaaagcaattttc 261  Q
    |||||||||||||||||||| || |||||  |||||||||||||||| | |||| ||| || | | | |||||||||||||    
T  6253382 cggtagttaactaccgttgggggcatttaattattttacttgtgtcattgtgaagttttctatgttagaaaagcaattttc 6253302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 261
Target Start/End: Complemental strand, 33073759 - 33073677
Alignment:
Q  179 aacggtagttaactaccgttggaggtatttatgtattttacttgtgtcagtatgaactttcctttttcaaaaaagcaattttc 261  Q
    |||||| |||||| |||| |||||| ||||| ||||||||||||||| | | |||| |||||| | ||| |||||||| ||||    
T  33073759 aacggttgttaacaaccgctggaggcatttaagtattttacttgtgttattgtgaagtttcctatgtcagaaaagcaaatttc 33073677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 20086227 - 20086272
Alignment:
Q  181 cggtagttaactaccgttggaggtatttatgtattttacttgtgtc 226  Q
    |||||||||||||||| |||||| ||||| |||||||| |||||||    
T  20086227 cggtagttaactaccgctggaggcatttaagtattttatttgtgtc 20086272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 261
Target Start/End: Original strand, 41270321 - 41270382
Alignment:
Q  200 gaggtatttatgtattttacttgtgtcagtatgaactttcctttttcaaaaaagcaattttc 261  Q
    |||| ||||| ||||||||||||||||| |||||| ||| |  | |||||||||||||||||    
T  41270321 gaggcatttacgtattttacttgtgtcaatatgaaattttcactgtcaaaaaagcaattttc 41270382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 8037282 - 8037330
Alignment:
Q  179 aacggtagttaactaccgttggaggtatttatgtattttacttgtgtca 227  Q
    ||||| |||||||||||| ||| |  |||||||||||||||||||||||    
T  8037282 aacggcagttaactaccgctggggacatttatgtattttacttgtgtca 8037330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 237
Target Start/End: Complemental strand, 20477289 - 20477201
Alignment:
Q  149 cagcggcagttaactggcggcgctttgaataacggtagttaactaccgttggaggtatttatgtattttacttgtgtcagtatgaactt 237  Q
    |||||| ||||||||| |||||  | |  ||||||| ||||||| ||| ||| || ||||| ||||||||||||||||| | |||||||    
T  20477289 cagcggaagttaactgccggcgtatggcctaacggttgttaactgccgctgggggcatttaggtattttacttgtgtcaatgtgaactt 20477201  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 24689844 - 24689800
Alignment:
Q  182 ggtagttaactaccgttggagg-tatttatgtattttacttgtgt 225  Q
    |||||||||||||||||||||| |||||  |||||||||||||||    
T  24689844 ggtagttaactaccgttggaggatattttagtattttacttgtgt 24689800  T

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Target: scaffold0325 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 179 - 262
Target Start/End: Complemental strand, 2895 - 2812
Alignment:
Q  179 aacggtagttaactaccgttggaggtatttatgtattttacttgtgtcagtatgaactttcctttttcaaaaaagcaattttca 262  Q
    |||||||||||||||||| ||  || ||| | ||||||||||| ||||  |||||| ||| || | ||||||||||||||||||    
T  2895 aacggtagttaactaccgctgtgggcattaacgtattttacttatgtctatatgaagttttctatgtcaaaaaagcaattttca 2812  T

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Target: scaffold0013 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 86730 - 86793
Alignment:
Q  1 ttgtgaattaattgatgaaatttgacgcaaattcgtgaaatacaagtttggagaaatttggaag 64  Q
    ||||||||||||||| |||||| | | ||||||||||  ||  |||||||||||||||||||||    
T  86730 ttgtgaattaattgaagaaattgggctcaaattcgtgctattgaagtttggagaaatttggaag 86793  T

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