View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6437_low_5 (Length: 350)
Name: NF6437_low_5
Description: NF6437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6437_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 21 - 328
Target Start/End: Complemental strand, 18145476 - 18145169
Alignment:
| Q |
21 |
aaaaccaaggggcctcggatggagtcactaaatataaagttgtcggatatgcacgagaaaataacatcgttggaggagatgatgggcaagatatttaccg |
120 |
Q |
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|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18145476 |
aaaaccgaggggcctcggatggagacactaaatataaagttgtcggatatgcacgagaaaataacatcgttggaggagatgatgggcaagatatttaccg |
18145377 |
T |
|
| Q |
121 |
ggttatttgtgcatcgttacagggaccttgatccaaatattagaatgtcatgtattgaatcgctcggtgtatggatcctgtcatacccatcaannnnnnn |
220 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
18145376 |
ggttatttgtgcatcgttacaggaaccttgatccaaatattagaatgtcatgcattgaatcgctcggtgtatggatcctgtcatacccatcaattttttt |
18145277 |
T |
|
| Q |
221 |
gaaggatgtatacttgaaatatcttgggtggacactgaatgacaaatatgctggtgtaagaaaatcttcaataagagcactgcaaaatctctatgagatg |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18145276 |
gaaggatgtatacttgaaatatcttgggtggacactgaatgacaaatatgctggtgtaagaaaatcttcaataagagcactgcaaaatctctatgagatg |
18145177 |
T |
|
| Q |
321 |
gatgataa |
328 |
Q |
| |
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|||||||| |
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| T |
18145176 |
gatgataa |
18145169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 28 - 328
Target Start/End: Original strand, 18220192 - 18220492
Alignment:
| Q |
28 |
aggggcctcggatggagtcactaaatataaagttgtcggatatgcacgagaaaataacatcgttggaggagatgatgggcaagatatttaccgggttatt |
127 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
18220192 |
aggggcctcggatgaagtcactaaatataaagttgtcggatatgcacgataaaataacattgttggaggagatgatgggcaagatatttactgggttatt |
18220291 |
T |
|
| Q |
128 |
tgtgcatcgttacagggaccttgatccaaatattagaatgtcatgtattgaatcgctcggtgtatggatcctgtcatacccatcaannnnnnngaaggat |
227 |
Q |
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|||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
18220292 |
tgtgcatcattaccgggaccttgatccaaatattagaatgtcatgcattgaatcgctcggtgtatggatcctgtcatacccatcaatttttttgaaggat |
18220391 |
T |
|
| Q |
228 |
gtatacttgaaatatcttgggtggacactgaatgacaaatatgctggtgtaagaaaatcttcaataagagcactgcaaaatctctatgagatggatgata |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18220392 |
gtatacttgaaatatcttgggtggacactgaatgacaaatatgctggtgtaagaaaatcttcaataagagcactgcaaaatctctatgagatggatgata |
18220491 |
T |
|
| Q |
328 |
a |
328 |
Q |
| |
|
| |
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| T |
18220492 |
a |
18220492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 121 - 262
Target Start/End: Complemental strand, 43842143 - 43842002
Alignment:
| Q |
121 |
ggttatttgtgcatcgttacagggaccttgatccaaatattagaatgtcatgtattgaatcgctcggtgtatggatcctgtcatacccatcaannnnnnn |
220 |
Q |
| |
|
|||||||||| ||||| ||| ||||| |||| |||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||| |
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| T |
43842143 |
ggttatttgtacatcgctaccgggacattgacccaaatattagaatgtcatgcattgaatcactcggtgcatggatcctgtcatacccatcacttttttt |
43842044 |
T |
|
| Q |
221 |
gaaggatgtatacttgaaatatcttgggtggacactgaatga |
262 |
Q |
| |
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| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
43842043 |
gcaggatttatacttgaaatatcttgggtggacactgaatga |
43842002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 21 - 123
Target Start/End: Complemental strand, 43842360 - 43842258
Alignment:
| Q |
21 |
aaaaccaaggggcctcggatggagtcactaaatataaagttgtcggatatgcacgagaaaataacatcgttggaggagatgatgggcaagatatttaccg |
120 |
Q |
| |
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|||||| ||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||| |||||| ||||||||| ||||||||||||| | |
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| T |
43842360 |
aaaaccgaggggcctcggatggagtcactaaataaaaggttttcggatatgcacgagaaaataacactgttggaagagatgatgcgcaagatatttactg |
43842261 |
T |
|
| Q |
121 |
ggt |
123 |
Q |
| |
|
||| |
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|
| T |
43842260 |
ggt |
43842258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 76 - 186
Target Start/End: Original strand, 35129551 - 35129661
Alignment:
| Q |
76 |
agaaaataacatcgttggaggagatgatgggcaagatatttaccgggttatttgtgcatcgttacagggaccttgatccaaatattagaatgtcatgtat |
175 |
Q |
| |
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||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||| || ||||| || | ||||||||||||||||||| || |
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| T |
35129551 |
agaaaataacactgttggaggagatgatgagcaagatatttaccaggttatttgtgcatcgctatagggaaattaactcaaatattagaatgtcatgcat |
35129650 |
T |
|
| Q |
176 |
tgaatcgctcg |
186 |
Q |
| |
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|||||| |||| |
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|
| T |
35129651 |
tgaatcactcg |
35129661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 268 - 329
Target Start/End: Complemental strand, 43841904 - 43841843
Alignment:
| Q |
268 |
atgctggtgtaagaaaatcttcaataagagcactgcaaaatctctatgagatggatgataac |
329 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43841904 |
atgctggtgtaagaaaaacttcaataagagcactgcaaaatctctatgagatggatgataac |
43841843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 229 - 331
Target Start/End: Original strand, 35136876 - 35136979
Alignment:
| Q |
229 |
tatacttgaaatatcttgggtggacactgaatgacaa-atatgctggtgtaagaaaatcttcaataagagcactgcaaaatctctatgagatggatgata |
327 |
Q |
| |
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|||||||||||||||||||||||||| ||||||| || | ||||||| ||| ||||| |||||||||||||||| |||||||||||||| |||||||| |
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| T |
35136876 |
tatacttgaaatatcttgggtggacattgaatgataagaaatgctggagtacgaaaaacttcaataagagcactaaaaaatctctatgaggtggatgatg |
35136975 |
T |
|
| Q |
328 |
acgt |
331 |
Q |
| |
|
|||| |
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|
| T |
35136976 |
acgt |
35136979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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