View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6437_low_6 (Length: 345)
Name: NF6437_low_6
Description: NF6437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6437_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 6e-93; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 62 - 238
Target Start/End: Complemental strand, 12694245 - 12694069
Alignment:
| Q |
62 |
cttaggatgtgtaggtggatgagaactaactaactaacgaaatttgaaaggaaatgaaactcatataccctacgttaattacaacttgagagataacttt |
161 |
Q |
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| T |
12694245 |
cttaggatgtgtagatggatgagaactaactaactaacgaaatttgaaaggaaatgaaactcatataccctacgttaattacaacttgagagataacttt |
12694146 |
T |
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| Q |
162 |
aacatcgcatatacatctcgcaaatactattatggtatagaattctctaatctgctccaaacaaaaaatatctctaa |
238 |
Q |
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| T |
12694145 |
aacatcgcatatacatctcgcaaatactattatggtatagaattctctaatctgctccaaacaaaaaatatctctaa |
12694069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 232 - 327
Target Start/End: Complemental strand, 12694102 - 12694007
Alignment:
| Q |
232 |
tctctaagctgctccagacaaaaaatatctctagtcctttccaatgtacagattggttactaggaatcattattgtcttctgcaattattgataat |
327 |
Q |
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| T |
12694102 |
tctctaatctgctccaaacaaaaaatatctctaatcctttccaatgtagagattggttactaggaatcattattgtcttctgcaattattgataat |
12694007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 107 - 174
Target Start/End: Complemental strand, 12714464 - 12714397
Alignment:
| Q |
107 |
gaaaggaaatgaaactcatataccctacgttaattacaacttgagagataactttaacatcgcatata |
174 |
Q |
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| T |
12714464 |
gaaaggaaatgaaactcatataccccacgtcaattacaacttgagagatgattttaacatcgtatata |
12714397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 107 - 174
Target Start/End: Complemental strand, 12718310 - 12718245
Alignment:
| Q |
107 |
gaaaggaaatgaaactcatataccctacgttaattacaacttgagagataactttaacatcgcatata |
174 |
Q |
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| T |
12718310 |
gaaaggaaatgaaactcata--ccccacgtcaattacaacttgagagatgattttaacatcgtatata |
12718245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 148
Target Start/End: Original strand, 12690671 - 12690711
Alignment:
| Q |
108 |
aaaggaaatgaaactcatataccctacgttaattacaactt |
148 |
Q |
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| T |
12690671 |
aaaggaaatgaaactcctataccccacgtcaattacaactt |
12690711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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