View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6438_high_1 (Length: 366)
Name: NF6438_high_1
Description: NF6438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6438_high_1 |
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| [»] scaffold0781 (1 HSPs) |
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Alignment Details
Target: scaffold0781 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: scaffold0781
Description:
Target: scaffold0781; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 10 - 351
Target Start/End: Complemental strand, 6070 - 5731
Alignment:
| Q |
10 |
catcatcattcttcatacattcatcatcaaaaaatccagannnnnnnnnaaaatcatgtacaacattcaaaaactttttgtagtttatttctagatttct |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
6070 |
catcatcattcttcatacattcatcatcaaaaaatccagattttttttttaaatcatgtacaacattcaaaaactttttctagtttatttctagatttct |
5971 |
T |
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| Q |
110 |
aatcgctagtttgtaacattgcagttatttgtggagaaattactaggaggaaacatggtgttttgttgaaatcttccgtaacaatttattctaaagaaat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5970 |
aatcgctagtttgtaacattgcagttatttgtggagaaattactagaaggaaacatggtgttttgttgaaatcttccgtaacaatttattctaaggaaat |
5871 |
T |
|
| Q |
210 |
ggagaggatctgcaccccccattaactaccttgagaatcatgtcatgatacctaaagagaacaannnnnnnatcggttagatcattggaggtgagatatt |
309 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5870 |
ggagaggatctgcaccccccattaactacctcgagaatcatgtcatgatacctaaagagaacaatttttttatcggttagatcattggaggtgagatatt |
5771 |
T |
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| Q |
310 |
atggtggtatatatatatccacttcaccacgagggttatagt |
351 |
Q |
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||||||| ||||||||||||||||||||||||||||||||| |
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| T |
5770 |
atggtgg--tatatatatccacttcaccacgagggttatagt |
5731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 10 - 351
Target Start/End: Complemental strand, 2217614 - 2217275
Alignment:
| Q |
10 |
catcatcattcttcatacattcatcatcaaaaaatccagannnnnnnnnaaaatcatgtacaacattcaaaaactttttgtagtttatttctagatttct |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2217614 |
catcatcattcttcatacattcatcatcaaaaaatccagattttttttttaaatcatgtacaacattcaaaaactttttctagtttatttctagatttct |
2217515 |
T |
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| Q |
110 |
aatcgctagtttgtaacattgcagttatttgtggagaaattactaggaggaaacatggtgttttgttgaaatcttccgtaacaatttattctaaagaaat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2217514 |
aatcgctagtttgtaacattgcagttatttgtggagaaattactagaaggaaacatggtgttttgttgaaatcttccgtaacaatttattctaaggaaat |
2217415 |
T |
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| Q |
210 |
ggagaggatctgcaccccccattaactaccttgagaatcatgtcatgatacctaaagagaacaannnnnnnatcggttagatcattggaggtgagatatt |
309 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2217414 |
ggagaggatctgcaccccccattaactacctcgagaatcatgtcatgatacctaaagagaacaatttttttatcggttagatcattggaggtgagatatt |
2217315 |
T |
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| Q |
310 |
atggtggtatatatatatccacttcaccacgagggttatagt |
351 |
Q |
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||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2217314 |
atggtgg--tatatatatccacttcaccacgagggttatagt |
2217275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 90 - 204
Target Start/End: Complemental strand, 1293647 - 1293533
Alignment:
| Q |
90 |
tagtttatttctagatttctaatcgctagtttgtaacattgcagttatttgtggagaaattactaggaggaaacatggtgttttgttgaaatcttccgta |
189 |
Q |
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||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| | ||||||| |||||||||| |||||| |||| || |
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| T |
1293647 |
tagtttatttctagatttctaattgctagtttgttacattgcagttatttgtggagaaattacacgaaggaaacgtggtgttttgatgaaattttccata |
1293548 |
T |
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| Q |
190 |
acaatttattctaaa |
204 |
Q |
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||||||||||||||| |
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| T |
1293547 |
acaatttattctaaa |
1293533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 90 - 209
Target Start/End: Original strand, 22798322 - 22798441
Alignment:
| Q |
90 |
tagtttatttctagatttctaatcgctagtttgtaacattgcagttatttgtggagaaattactaggaggaaacatggtgttttgttgaaatcttccgta |
189 |
Q |
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|||||||| |||| || |||||| ||| ||||| |||||||||||||| |||||||| |||| || |||||||||||||||||| |||||||||| || |
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| T |
22798322 |
tagtttatctctaatttgctaatctctaatttgtcacattgcagttattcgtggagaagttacaagaaggaaacatggtgttttgacgaaatcttccata |
22798421 |
T |
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| Q |
190 |
acaatttattctaaagaaat |
209 |
Q |
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||| ||||||||||| |||| |
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| T |
22798422 |
acagtttattctaaaaaaat |
22798441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 43
Target Start/End: Complemental strand, 26723675 - 26723642
Alignment:
| Q |
10 |
catcatcattcttcatacattcatcatcaaaaaa |
43 |
Q |
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||||||||||||||||||||||||||| |||||| |
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| T |
26723675 |
catcatcattcttcatacattcatcataaaaaaa |
26723642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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