View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6439_high_4 (Length: 246)
Name: NF6439_high_4
Description: NF6439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6439_high_4 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 246
Target Start/End: Original strand, 20022956 - 20023189
Alignment:
| Q |
13 |
agcataggcaaaagggggatgtagtggtcgtctcacaatgacataagcacaaggggcgatcgcggtagttagaatgccaccggaagcaacgagagggggc |
112 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
20022956 |
agcatcggcaaaagggggatgtagtggtcgtctcacaatgacataagcgcaaggggcgatcgcggtagttagaatgccaccggcagcaacgagagggggc |
20023055 |
T |
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| Q |
113 |
tcatttcttctttttggttatggtaatttattccttttattatatttgtctcattgtttggtcctcattttcttcannnnnnnncaaggaccgatatgtg |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
20023056 |
tcatttcttctttttggttatggtaatttattccttttattctatttgtctcattgtttggtcctcattttcttcattttttttcaaggaccgacatgtg |
20023155 |
T |
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| Q |
213 |
atggagtagccgcataggcaatgaaggtattctt |
246 |
Q |
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||||||||||||||||| ||||||||||||||| |
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| T |
20023156 |
atggagtagccgcatagaaaatgaaggtattctt |
20023189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 13 - 246
Target Start/End: Original strand, 23159461 - 23159697
Alignment:
| Q |
13 |
agcataggcaaaagggggatgtagtggtcgtctcacaatgacataagcacaaggggcgatcgcggtagttagaatgccaccggaagcaacgagagggggc |
112 |
Q |
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||||| ||||||||||| ||| |||||||||||||||||||| ||||| |||||||| | | | ||||||||| ||||||||| ||||||||||||| || |
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| T |
23159461 |
agcatcggcaaaaggggaatgaagtggtcgtctcacaatgacgtaagcgcaaggggcaaccaccgtagttagagtgccaccggcagcaacgagagggcgc |
23159560 |
T |
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| Q |
113 |
tcat---ttcttctttttggttatggtaatttattccttttattatatttgtctcattgtttggtcctcattttcttcannnnnnnncaaggaccgatat |
209 |
Q |
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|||| ||||||||||| |||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| || |
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| T |
23159561 |
tcatttcttcttcttttttgttatgttcatttattccttttattatatttgtctcatagtttggtcctcattttcttcatttttttccaaggaccggcat |
23159660 |
T |
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| Q |
210 |
gtgatggagtagccgcataggcaatgaaggtattctt |
246 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
23159661 |
gtgatggagtagccgcataggcaatgaaggtattctt |
23159697 |
T |
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