View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6439_low_2 (Length: 588)
Name: NF6439_low_2
Description: NF6439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6439_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 247
Target Start/End: Original strand, 4822104 - 4822335
Alignment:
| Q |
16 |
ccatcatcagaactagcagcttcgtagagacaactttccggtgaaccactatcctcgtgaccgggtggcttggccttccgacgaccagctccaaccggaa |
115 |
Q |
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| T |
4822104 |
ccatcatcagaactagcagcttcgtagagacaactttccggtgaaccactatcctcgtgaccgggtggcttggccttccgacgaccagctccaaccggaa |
4822203 |
T |
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| Q |
116 |
cgttacgcagggccccaccagccgtccagtacctttgacaactcttacaaaaatgtcttggttgattaacgttgtaattattgaaataacaaaatttagt |
215 |
Q |
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| T |
4822204 |
cgttacgcagggccccaccagccgtccagtacctttgacaactcttacaaaaatgtcttggttgattaacgttgtaattattgaaataacaaaatttagt |
4822303 |
T |
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| Q |
216 |
ttccatactcttgcatcttggacatggtatga |
247 |
Q |
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| T |
4822304 |
ttccatactcttgcatcttggacatggtatga |
4822335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 422 - 578
Target Start/End: Original strand, 4822530 - 4822686
Alignment:
| Q |
422 |
gttgttgttggattattcttaatagagaaggttttggttggcgttataatagaaggggtttatatagagataaataaagcaaaaaagtgcttattagtta |
521 |
Q |
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| T |
4822530 |
gttgttattggattattcttaatagagaaggttttggttggcgttataatagaaggggtttatatagagataaataaagcaaaaaagtgcttattagtta |
4822629 |
T |
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| Q |
522 |
gcacaatcataaaccacgtgctacacgacaaaagaagtagacgtaggtggagtataa |
578 |
Q |
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| T |
4822630 |
gcacaatcataaaccacgtgctacacgacaaaagaagtagacgtaggtggagtataa |
4822686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 314 - 395
Target Start/End: Original strand, 4822402 - 4822483
Alignment:
| Q |
314 |
catgcaactttattgttgtgccaaatagcttaatcccttgattttcttcaccttttctcacttcagccatattttcatgtaa |
395 |
Q |
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| T |
4822402 |
catgcaattttattgttgtgccaaatagcttaatcccttgattttcttcaccttttctcacttcagccatattttcatgtaa |
4822483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 151 - 240
Target Start/End: Original strand, 9431348 - 9431437
Alignment:
| Q |
151 |
tgacaactcttacaaaaatgtcttggttgattaacgttgtaattattgaaataacaaaatttagtttccatactcttgcatcttggacat |
240 |
Q |
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| T |
9431348 |
tgacaactccgacaaaaatgccgaggttgattgacattgtagttgttgaaataacaaaattttgtgtcgaaacttttgcatcttggacat |
9431437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 185 - 242
Target Start/End: Complemental strand, 18188194 - 18188137
Alignment:
| Q |
185 |
cgttgtaattattgaaataacaaaatttagtttccatactcttgcatcttggacatgg |
242 |
Q |
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| T |
18188194 |
cgttgtaattattgtagtaacaaaattttgtgtccatgcttttgcatcttggacatgg |
18188137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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