View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6439_low_4 (Length: 409)
Name: NF6439_low_4
Description: NF6439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6439_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 193 - 393
Target Start/End: Complemental strand, 50042709 - 50042509
Alignment:
| Q |
193 |
gcggggaggggagcaagcattcccttctttgatttcattttaattccacccacagcgcttcacaataaaaatcaattgcacctaatataaatcaattgca |
292 |
Q |
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| T |
50042709 |
gcggggaggggagcaagcattcccttctttgatttcattttaattccacccacagcgcttcacaataaaaatcaattgcacctaatataaatcaattgct |
50042610 |
T |
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| Q |
293 |
tataatatcatgatttatttttgcattcatagtattgaacatattaatttgtggtttttgtacgcagagtacaagtttggaaaaagaggaagcaaaattc |
392 |
Q |
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| T |
50042609 |
tataatatcatgatttatttttgcattcatagtattgaacatattaatttgtggtttttgtacgcagagtacaagtttggaaaaagaggaagcaaaattc |
50042510 |
T |
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| Q |
393 |
t |
393 |
Q |
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| T |
50042509 |
t |
50042509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 50042897 - 50042755
Alignment:
| Q |
1 |
cgaaaacattgaaaatggaacaacaccaaagctcattatcctaccagattcagtcgaagatcttctcagagtagcaggtatgggtataactatctaaatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50042897 |
cgaaaacattgaaaatggaacaacaccaaagctcattatcctaccagattcagtcgaagatcttctcagagtagcaggtatgggtataactatctaaatt |
50042798 |
T |
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| Q |
101 |
cagtatgcaagcattctcccaaaagattctgagtggtttcacggttg |
147 |
Q |
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| T |
50042797 |
cagtatgcaagcattctc----aagattctgagtggtttcacggttg |
50042755 |
T |
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