View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6439_low_5 (Length: 366)
Name: NF6439_low_5
Description: NF6439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6439_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 7 - 359
Target Start/End: Original strand, 30098899 - 30099251
Alignment:
| Q |
7 |
acatcatcaactgttgcaggtaactannnnnnnngtggttggagacaaatgttagtaaattatgttagtttccggtgtttgaactctcgacttcctagct |
106 |
Q |
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|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30098899 |
acatcatcaactgttgcaggtaactattttttttgttgttggagacaaatgttagtaaattatgttagtttccggtgtttgaactctcgacttcctagct |
30098998 |
T |
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| Q |
107 |
agtactcattcggtgtctctgagcttaccaatcgaactgtctgctttgaacttgtaggtaactatgttaatggagcttcttattttggttatgctaaagg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30098999 |
agtactcattcggtgtctctgagcttaccaatcgaactgtctgctttgaacttgtaggtaactatgttaatggagcttcttattttggttatgccaaagg |
30099098 |
T |
|
| Q |
207 |
aatagcaagaggcattgcaccaaaagctaggattgctatgtacaaagtcatttgggaagagggtcgtttcgcctctgatgttttagctggcatggaccaa |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30099099 |
aatagcaagaggcattgcaccaaaagctaggattgctatgtacaaagtcatttgggaagagggtcgtttcgcctctgatgttttagctggcatggaccaa |
30099198 |
T |
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| Q |
307 |
gctattaacgacggtgttgatgtgatttcaatttcaatgggatttgatgatgt |
359 |
Q |
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| T |
30099199 |
gctattaacgacggtgttgatgtgatttcaatttcaatgggatttgatgatgt |
30099251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 106 - 355
Target Start/End: Complemental strand, 30091914 - 30091666
Alignment:
| Q |
106 |
tagtactcattcggtgtctctgagcttaccaatcgaactgtctgctttgaacttgtaggtaactatgttaatggagcttcttattttggttatgctaaag |
205 |
Q |
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| T |
30091914 |
tagtactccttctgtaactctcagcttactaatcgagctgtctgcttcggacttc-aggtaactatgtcaatggaacttcttattttggttatgctaaag |
30091816 |
T |
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| Q |
206 |
gaatagcaagaggcattgcaccaaaagctaggattgctatgtacaaagtcatttgggaagagggtcgtttcgcctctgatgttttagctggcatggacca |
305 |
Q |
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|| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||| |||||||| |
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| T |
30091815 |
gagtagcaagaggcattgcaccaagagctaggcttgctatgtacaaagtcatttgggaagagggtcttttggcttctgatgttttagctggaatggacca |
30091716 |
T |
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| Q |
306 |
agctattaacgacggtgttgatgtgatttcaatttcaatgggatttgatg |
355 |
Q |
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||||||| || ||||||||||||||||||||||| ||||||||||||| |
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| T |
30091715 |
agctattgctgatggtgttgatgtgatttcaatttctatgggatttgatg |
30091666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 162 - 355
Target Start/End: Complemental strand, 30087879 - 30087686
Alignment:
| Q |
162 |
aggtaactatgttaatggagcttcttattttggttatgctaaaggaatagcaagaggcattgcaccaaaagctaggattgctatgtacaaagtcatttgg |
261 |
Q |
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|||||||||||| || ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
30087879 |
aggtaactatgtcaacggagcttcttattttggctatgctaaaggagtagcaagaggcattgcaccaaaagctaagattgctatgtacaaagtcatttgg |
30087780 |
T |
|
| Q |
262 |
gaagagggtcgtttcgcctctgatgttttagctggcatggaccaagctattaacgacggtgttgatgtgatttcaatttcaatgggatttgatg |
355 |
Q |
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||||||| | | | || ||||||||||||||||| ||||||||||| |||| || |||||||| |||||||||||||| || ||| |||||| |
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| T |
30087779 |
gaagaggatgttatggcttctgatgttttagctggaatggaccaagcaattattgatggtgttgacgtgatttcaatttctattggaattgatg |
30087686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 312
Target Start/End: Complemental strand, 35171551 - 35171429
Alignment:
| Q |
190 |
tttggttatgctaaaggaatagcaagaggcattgcaccaaaagctaggattgctatgtacaaagtcatttgggaagagggtcgtttcgcctctgatgttt |
289 |
Q |
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||||||||||| ||||| |||| ||||| ||||||||||||||||| ||||| ||||| ||||| ||||||| || |||||| | || ||||||||| |
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| T |
35171551 |
tttggttatgcaaaaggtgtagctagaggtattgcaccaaaagctagaattgcaatgtataaagtactttgggacgaaggtcgtctagcttctgatgttc |
35171452 |
T |
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| Q |
290 |
tagctggcatggaccaagctatt |
312 |
Q |
| |
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| || || ||||| ||||||||| |
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| T |
35171451 |
ttgcaggaatggatcaagctatt |
35171429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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