View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6440_high_2 (Length: 466)
Name: NF6440_high_2
Description: NF6440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6440_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Original strand, 25259070 - 25259531
Alignment:
| Q |
1 |
gttggactcttgtttccatcaatgaacggttttcttcttccaatcccatagcttctcttcgacaccgtgatatgcccctaagaacctgaaaaacaaaaga |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25259070 |
gttggactcttgtttccatcaatgcacggttttcttcttccaatcccatagcttctcttcgacaccgtgatatgcccctaagaacctgaaaaacaaaaga |
25259169 |
T |
|
| Q |
101 |
aacttcagaactttgaatagtttccaacagggtacaaacnnnnnnnc--------gaatgatacttttaatactgtgagtttattcaaaatattagattc |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25259170 |
aacttcagaactttgaatagtttccaacagggtacaaaccaaaaaacaaaaaaacgaatgatacttttaatactgtgagtttattcaaaatattagattc |
25259269 |
T |
|
| Q |
193 |
taataacaactaaattccaaagtcctttagaaaccatatctaatttaacattgnnnnnnnt---caagttttattttgaaaaaatcaagatacaattcta |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
25259270 |
taataacaactaaattccaaagtcctttagaaactatatctaatttaacattgaaaaaaattatcaagttttattttgaaaaaatcaagatacaattcta |
25259369 |
T |
|
| Q |
290 |
gttaacagttcctcttcgttaagtatggtctagtataattttgatcgttgtaataatctcgatggggtcaaacaacgatcagaatcatgctagaccaaca |
389 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25259370 |
gttaatagttcctctttgttaagtatggtctagtataattttgatcgttgtaataatctcgatggggtcaaacaacgatcagaatcatgctagaccaaca |
25259469 |
T |
|
| Q |
390 |
tt-aaaactgaggtctgaggacttgaatttgaattcttaatcatctaagagtctgtttgatg |
450 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25259470 |
ttaaaaactgaggtctgaggacttgaatttgaattcttaatcatctaagagtctgtttgatg |
25259531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Original strand, 25322860 - 25323321
Alignment:
| Q |
1 |
gttggactcttgtttccatcaatgaacggttttcttcttccaatcccatagcttctcttcgacaccgtgatatgcccctaagaacctgaaaaacaaaaga |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25322860 |
gttggactcttgtttccatcaatgcacggttttcttcttccaatcccatagcttctcttcgacaccgtgatatgcccctaagaacctgaaaaacaaaaga |
25322959 |
T |
|
| Q |
101 |
aacttcagaactttgaatagtttccaacagggtacaaacnnnnnnnc--------gaatgatacttttaatactgtgagtttattcaaaatattagattc |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25322960 |
aacttcagaactttgaatagtttccaacagggtacaaaccaaaaaacaaaaaaacgaatgatacttttaatactgtgagtttattcaaaatattagattc |
25323059 |
T |
|
| Q |
193 |
taataacaactaaattccaaagtcctttagaaaccatatctaatttaacattgnnnnnnnt---caagttttattttgaaaaaatcaagatacaattcta |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
25323060 |
taataacaactaaattccaaagtcctttagaaactatatctaatttaacattgaaaaaaattatcaagttttattttgaaaaaatcaagatacaattcta |
25323159 |
T |
|
| Q |
290 |
gttaacagttcctcttcgttaagtatggtctagtataattttgatcgttgtaataatctcgatggggtcaaacaacgatcagaatcatgctagaccaaca |
389 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25323160 |
gttaatagttcctctttgttaagtatggtctagtataattttgatcgttgtaataatctcgatggggtcaaacaacgatcagaatcatgctagaccaaca |
25323259 |
T |
|
| Q |
390 |
tt-aaaactgaggtctgaggacttgaatttgaattcttaatcatctaagagtctgtttgatg |
450 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25323260 |
ttaaaaactgaggtctgaggacttgaatttgaattcttaatcatctaagagtctgtttgatg |
25323321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University