View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6440_high_4 (Length: 450)

Name: NF6440_high_4
Description: NF6440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6440_high_4
NF6440_high_4
[»] chr2 (13 HSPs)
chr2 (18-217)||(8921357-8921557)
chr2 (243-386)||(39819087-39819230)
chr2 (243-386)||(12918557-12918700)
chr2 (227-386)||(15562212-15562371)
chr2 (225-352)||(7755342-7755469)
chr2 (225-374)||(13421692-13421841)
chr2 (219-299)||(34563326-34563406)
chr2 (390-430)||(8921552-8921592)
chr2 (246-286)||(18182591-18182631)
chr2 (328-379)||(39819060-39819112)
chr2 (342-386)||(12918498-12918543)
chr2 (218-255)||(12918663-12918700)
chr2 (218-255)||(39819193-39819230)
[»] chr7 (14 HSPs)
chr7 (225-384)||(17272705-17272864)
chr7 (230-361)||(29681776-29681906)
chr7 (225-298)||(7211866-7211939)
chr7 (235-328)||(7211947-7212040)
chr7 (246-386)||(43500011-43500148)
chr7 (236-299)||(25099327-25099390)
chr7 (225-301)||(46282874-46282951)
chr7 (225-273)||(32315713-32315761)
chr7 (236-286)||(32315790-32315840)
chr7 (225-298)||(4911698-4911771)
chr7 (246-286)||(6980948-6980988)
chr7 (246-286)||(42494799-42494839)
chr7 (222-276)||(29407496-29407550)
chr7 (218-255)||(29681903-29681940)
[»] chr3 (23 HSPs)
chr3 (225-386)||(11512393-11512554)
chr3 (225-386)||(22893891-22894051)
chr3 (235-352)||(31342023-31342140)
chr3 (251-352)||(20286936-20287037)
chr3 (237-299)||(36738279-36738341)
chr3 (243-283)||(17546997-17547037)
chr3 (217-273)||(48342785-48342841)
chr3 (225-276)||(29081700-29081751)
chr3 (321-377)||(29081598-29081655)
chr3 (219-276)||(32385358-32385415)
chr3 (246-299)||(32385436-32385489)
chr3 (237-273)||(48342320-48342356)
chr3 (245-288)||(29081625-29081668)
chr3 (257-287)||(16205747-16205777)
chr3 (238-300)||(20496553-20496614)
chr3 (217-255)||(22893890-22893928)
chr3 (218-276)||(31342108-31342165)
chr3 (342-387)||(25790897-25790942)
chr3 (342-379)||(49159502-49159539)
chr3 (222-254)||(5633181-5633213)
chr3 (350-382)||(5633181-5633213)
chr3 (215-255)||(11512517-11512557)
chr3 (216-276)||(36738362-36738422)
[»] chr1 (25 HSPs)
chr1 (224-387)||(50754729-50754892)
chr1 (225-386)||(28739304-28739465)
chr1 (243-386)||(9379842-9379985)
chr1 (225-386)||(28045325-28045486)
chr1 (243-386)||(9884865-9885008)
chr1 (243-343)||(6539593-6539693)
chr1 (251-353)||(15928097-15928200)
chr1 (314-386)||(44381908-44381981)
chr1 (217-276)||(10449446-10449505)
chr1 (319-386)||(35251165-35251234)
chr1 (319-382)||(49200058-49200122)
chr1 (246-386)||(10449447-10449579)
chr1 (232-276)||(28810061-28810105)
chr1 (218-273)||(44801751-44801806)
chr1 (218-276)||(44938794-44938852)
chr1 (243-280)||(4579192-4579229)
chr1 (217-255)||(28045449-28045487)
chr1 (217-255)||(28739303-28739341)
chr1 (217-255)||(44381907-44381945)
chr1 (257-299)||(44938872-44938914)
chr1 (251-288)||(719023-719060)
chr1 (342-379)||(6539683-6539720)
chr1 (260-301)||(49199994-49200035)
chr1 (218-255)||(50754854-50754891)
chr1 (218-270)||(593824-593876)
[»] chr6 (12 HSPs)
chr6 (225-386)||(2543735-2543895)
chr6 (225-386)||(11448063-11448224)
chr6 (218-298)||(369498-369578)
chr6 (218-276)||(16193830-16193888)
chr6 (246-386)||(16193757-16193888)
chr6 (218-275)||(28581731-28581788)
chr6 (230-286)||(2980786-2980842)
chr6 (235-296)||(35049754-35049816)
chr6 (218-255)||(11448187-11448224)
chr6 (217-255)||(2543734-2543772)
chr6 (246-299)||(28581810-28581863)
chr6 (245-301)||(1879187-1879243)
[»] chr4 (22 HSPs)
chr4 (243-386)||(31846782-31846925)
chr4 (245-352)||(6607420-6607527)
chr4 (244-386)||(31012152-31012294)
chr4 (245-370)||(6608375-6608500)
chr4 (309-385)||(2254622-2254698)
chr4 (235-295)||(54223569-54223629)
chr4 (225-299)||(11392307-11392379)
chr4 (313-379)||(46321429-46321496)
chr4 (218-276)||(36273058-36273116)
chr4 (235-285)||(38324924-38324974)
chr4 (235-296)||(41306689-41306750)
chr4 (243-300)||(43063542-43063599)
chr4 (228-276)||(30023646-30023694)
chr4 (319-384)||(32008336-32008402)
chr4 (222-276)||(33380606-33380660)
chr4 (222-272)||(53261093-53261143)
chr4 (245-286)||(9712943-9712984)
chr4 (246-286)||(22435379-22435419)
chr4 (330-384)||(15031965-15032020)
chr4 (328-379)||(31846900-31846952)
chr4 (225-273)||(40789263-40789311)
chr4 (328-379)||(54613030-54613082)
[»] chr5 (20 HSPs)
chr5 (225-386)||(5215560-5215722)
chr5 (225-359)||(9177863-9177997)
chr5 (243-359)||(29385303-29385419)
chr5 (243-370)||(19417469-19417595)
chr5 (251-387)||(36568736-36568872)
chr5 (251-301)||(1840003-1840053)
chr5 (227-299)||(23219360-23219432)
chr5 (218-300)||(896268-896350)
chr5 (235-358)||(25879328-25879447)
chr5 (235-288)||(42772054-42772107)
chr5 (238-301)||(31848177-31848239)
chr5 (320-380)||(7137637-7137698)
chr5 (243-299)||(7137665-7137721)
chr5 (218-262)||(41287997-41288041)
chr5 (217-272)||(12605660-12605715)
chr5 (328-379)||(29385394-29385446)
chr5 (248-287)||(5998620-5998659)
chr5 (251-281)||(37325634-37325664)
chr5 (349-387)||(41288004-41288042)
chr5 (342-379)||(19417442-19417479)
[»] chr8 (11 HSPs)
chr8 (245-386)||(43465112-43465256)
chr8 (246-387)||(31470771-31470914)
chr8 (314-386)||(16687512-16687585)
chr8 (342-386)||(1605038-1605082)
chr8 (218-275)||(4531845-4531902)
chr8 (246-350)||(7931550-7931655)
chr8 (217-255)||(16687511-16687549)
chr8 (246-296)||(33763539-33763589)
chr8 (243-276)||(31470845-31470878)
chr8 (235-272)||(45051343-45051380)
chr8 (222-266)||(33763461-33763505)
[»] scaffold0343 (2 HSPs)
scaffold0343 (342-387)||(12225-12270)
scaffold0343 (246-299)||(12285-12338)
[»] scaffold1315 (1 HSPs)
scaffold1315 (225-276)||(1819-1870)
[»] scaffold1293 (1 HSPs)
scaffold1293 (225-276)||(201-252)
[»] scaffold0001 (1 HSPs)
scaffold0001 (243-301)||(507740-507798)
[»] scaffold0110 (1 HSPs)
scaffold0110 (219-276)||(26500-26557)


Alignment Details
Target: chr2 (Bit Score: 164; Significance: 2e-87; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 8921357 - 8921557
Alignment:
Q  18 catacacctttgttttagctagtagacaataaacaattactaaagtgtatatatccacattgttatttaagatttactttctgtttcttcatggttttgt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8921357 catacacctttgttttagctagtagacaataaacaattactaaagtgtatatatccacattgttatttaagatttactttctgtttcttcatggttttgt 8921456  T
Q  118 agcttagaaagatacaacaatttttggtcg-nnnnnnngatagcacatagtttagcatactttatatagctagattgtcaatgactagatatagtaacag 216  Q
    ||||||||||||||||||| ||| ||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8921457 agcttagaaagatacaacattttatggtcgaaaaaaaagatagcacatagtttagcatactttatatagctagattgtcaatgactagatatagtaacag 8921556  T
Q  217 g 217  Q
    |    
T  8921557 g 8921557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 243 - 386
Target Start/End: Original strand, 39819087 - 39819230
Alignment:
Q  243 ttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggta 342  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||       |||||||||||||||||||| |||||||||||||    
T  39819087 ttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttttgttgttttgcacacttgtaatattgtggttggta 39819186  T
Q  343 atgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 386  Q
    ||||||||||| |||||||| |||||||||||||||||||||||    
T  39819187 atgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 39819230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 243 - 386
Target Start/End: Original strand, 12918557 - 12918700
Alignment:
Q  243 ttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggta 342  Q
    ||||||| |||||||||||||||||||||| |||||||| |||||||||||||| ||||       ||||||||||||| ||||||||||||||||||||    
T  12918557 ttggtgacattggccaaccacaatgtcacatgtggcttttttctttttctttcataagacttttttgttgttttgcacatttgtaacattgtggttggta 12918656  T
Q  343 atgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 386  Q
    ||||||||||| |||||||| |||||||||||||||||||||||    
T  12918657 atgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 12918700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 227 - 386
Target Start/End: Original strand, 15562212 - 15562371
Alignment:
Q  227 ttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgt 326  Q
    ||||||| ||||||||||| ||| |||||||||||||||||||||| ||| |||||||||||||  |||||  ||       ||||||||||||||||||    
T  15562212 ttgggtgacattgtggttgatgacattggccaaccacaatgtcacatgtgactttcttcttttttattcactggatttttttgttgttttgcacacttgt 15562311  T
Q  327 aacattgtggttggtaatgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 386  Q
    ||||||||| |||||||||||||||||||||||||| | |||||||||||| ||||||||    
T  15562312 aacattgtgattggtaatgtcaccaatatcaccaaccataatgtcacccaaatattatcc 15562371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 225 - 352
Target Start/End: Original strand, 7755342 - 7755469
Alignment:
Q  225 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacactt 324  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||       ||||||||| ||||||    
T  7755342 acttgggtgacattgtggttggtgacattggccaaccacaatgtcacaagtggcttttttctttttctttaacaagatttttttgttgttttgtacactt 7755441  T
Q  325 gtaacattgtggttggtaatgtcaccaa 352  Q
    ||||||||||| ||||||||||||||||    
T  7755442 gtaacattgtgattggtaatgtcaccaa 7755469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 225 - 374
Target Start/End: Complemental strand, 13421841 - 13421692
Alignment:
Q  225 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacactt 324  Q
    ||||||||| ||||||||||||||| |||| |||||||||| || ||| ||| ||||||| ||||||||| || |||       ||||||||  ||| ||    
T  13421841 acttgggtgacattgtggttggtgacattgaccaaccacaacgttacatgtgactttcttttttttcttttacgagatttttttgttgttttatacattt 13421742  T
Q  325 gtaacattgtggttggtaatgtcaccaatatcaccaacgacaatgtcacc 374  Q
    | |||||| |  ||| |||||||| |||| |||||||| || ||||||||    
T  13421741 gaaacattataattgataatgtcatcaatgtcaccaaccacgatgtcacc 13421692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 219 - 299
Target Start/End: Complemental strand, 34563406 - 34563326
Alignment:
Q  219 gataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaa 299  Q
    |||||||||| |||| ||| ||||||||||| |||| |||||  |||||||||||||  |||||||| |||||||||||||    
T  34563406 gataatactttggtgacatcgtggttggtgacattgaccaacttcaatgtcacaagtatctttcttcattttctttcacaa 34563326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 390 - 430
Target Start/End: Original strand, 8921552 - 8921592
Alignment:
Q  390 aacaggtaaactaattattggtaaggttctttgcttgcttg 430  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  8921552 aacaggtaaactaattattggcaaggttctttgcttgcttg 8921592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 286
Target Start/End: Complemental strand, 18182631 - 18182591
Alignment:
Q  246 gtgatattggccaaccacaatgtcacaagtggctttcttct 286  Q
    |||| |||||| |||||||||||||||||||||||||||||    
T  18182631 gtgacattggcaaaccacaatgtcacaagtggctttcttct 18182591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 379
Target Start/End: Complemental strand, 39819112 - 39819060
Alignment:
Q  328 acattgtggttggt-aatgtcaccaatatcaccaacgacaatgtcacccaagt 379  Q
    |||||||||||||  |||||||||||| |||||||| ||||||||||||||||    
T  39819112 acattgtggttggccaatgtcaccaatgtcaccaaccacaatgtcacccaagt 39819060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 386
Target Start/End: Complemental strand, 12918543 - 12918498
Alignment:
Q  342 aatgtcaccaatatcaccaacgacaatgtcaccc-aagtattatcc 386  Q
    |||||||||||| |||||||| |||||||||||| |||||||||||    
T  12918543 aatgtcaccaatgtcaccaaccacaatgtcacccaaagtattatcc 12918498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 255
Target Start/End: Complemental strand, 12918700 - 12918663
Alignment:
Q  218 ggataatacttgggtggcattgtggttggtgatattgg 255  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  12918700 ggataatacttgggtgacattgtggttggtgacattgg 12918663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 255
Target Start/End: Complemental strand, 39819230 - 39819193
Alignment:
Q  218 ggataatacttgggtggcattgtggttggtgatattgg 255  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  39819230 ggataatacttgggtgacattgtggttggtgacattgg 39819193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 119; Significance: 1e-60; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 225 - 384
Target Start/End: Original strand, 17272705 - 17272864
Alignment:
Q  225 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacactt 324  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||       ||||||||||||||||    
T  17272705 acttgggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttttgttgttttgcacactt 17272804  T
Q  325 gtaacattgtggttggtaatgtcaccaatatcaccaacgacaatgtcacccaagtattat 384  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  17272805 gtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattat 17272864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 230 - 361
Target Start/End: Original strand, 29681776 - 29681906
Alignment:
Q  230 ggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaac 329  Q
    |||| ||||||||||||||| ||||||||||||||| |||||| |||||||| || ||||| ||| ||||||       |||||||| ||||||||||||    
T  29681776 ggtgacattgtggttggtgacattggccaaccacaacgtcacatgtggctttttttttttttttt-acaagatatttttgttgttttacacacttgtaac 29681874  T
Q  330 attgtggttggtaatgtcaccaatatcaccaa 361  Q
    |||||||||||||||||||||||| |||||||    
T  29681875 attgtggttggtaatgtcaccaatgtcaccaa 29681906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 225 - 298
Target Start/End: Original strand, 7211866 - 7211939
Alignment:
Q  225 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcaca 298  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  7211866 acttgggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcaca 7211939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 235 - 328
Target Start/End: Complemental strand, 7212040 - 7211947
Alignment:
Q  235 cattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaa 328  Q
    ||||||||| || || |||||||||||||||||||||| ||| ||||||||||||||||||||||||       ||||||||||||||||||||    
T  7212040 cattgtggtgggagacattggccaaccacaatgtcacatgtgactttcttctttttctttcacaagatttttttgttgttttgcacacttgtaa 7211947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 246 - 386
Target Start/End: Original strand, 43500011 - 43500148
Alignment:
Q  246 gtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggtaatg 345  Q
    |||||||||| ||| ||||||||||||  || | ||||||||||||||||||||         ||||||||| ||  |||||||||||||||||||||||    
T  43500011 gtgatattggtcaatcacaatgtcacatatgacattcttctttttctttcacaa--tttttttgttgttttgtact-ttgtaacattgtggttggtaatg 43500107  T
Q  346 tcaccaatatcaccaacgacaatgtcacccaagtattatcc 386  Q
    ||||||||||||||||| ||||| || ||||| ||||||||    
T  43500108 tcaccaatatcaccaaccacaatatcgcccaaatattatcc 43500148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 236 - 299
Target Start/End: Complemental strand, 25099390 - 25099327
Alignment:
Q  236 attgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaa 299  Q
    ||||||||||||||  |||| |||||||||||||||||||| ||||||||||||||||||||||    
T  25099390 attgtggttggtgactttggtcaaccacaatgtcacaagtgtctttcttctttttctttcacaa 25099327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 225 - 301
Target Start/End: Original strand, 46282874 - 46282951
Alignment:
Q  225 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtgg-ctttcttctttttctttcacaaga 301  Q
    ||||| ||| |||||| |||||||| |||||||||||||||| ||||||||||  |||||||||| ||||||||||||    
T  46282874 acttgagtgacattgtagttggtgacattggccaaccacaatatcacaagtggtttttcttctttctctttcacaaga 46282951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 225 - 273
Target Start/End: Original strand, 32315713 - 32315761
Alignment:
Q  225 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaa 273  Q
    ||||| ||| ||||||||||||||| |||||||||||||||||||||||    
T  32315713 acttgcgtgacattgtggttggtgacattggccaaccacaatgtcacaa 32315761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 286
Target Start/End: Complemental strand, 32315840 - 32315790
Alignment:
Q  236 attgtggttggtgatattggccaaccacaatgtcacaagtggctttcttct 286  Q
    |||||||||||||| ||||| |||| ||||||||| |||||||||||||||    
T  32315840 attgtggttggtgacattggtcaactacaatgtcagaagtggctttcttct 32315790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 225 - 298
Target Start/End: Complemental strand, 4911771 - 4911698
Alignment:
Q  225 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcaca 298  Q
    ||||||||| ||||||| | ||||||||||| |||| | ||||||||| |||  |||||||||| |||||||||    
T  4911771 acttgggtgacattgtgatcggtgatattggtcaactataatgtcacaggtgaatttcttctttctctttcaca 4911698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 286
Target Start/End: Complemental strand, 6980988 - 6980948
Alignment:
Q  246 gtgatattggccaaccacaatgtcacaagtggctttcttct 286  Q
    |||| |||||||||||||||||| |||||||||||||||||    
T  6980988 gtgacattggccaaccacaatgttacaagtggctttcttct 6980948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 286
Target Start/End: Original strand, 42494799 - 42494839
Alignment:
Q  246 gtgatattggccaaccacaatgtcacaagtggctttcttct 286  Q
    |||| |||||| |||||||||||||||||||||||||||||    
T  42494799 gtgacattggcaaaccacaatgtcacaagtggctttcttct 42494839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 276
Target Start/End: Original strand, 29407496 - 29407550
Alignment:
Q  222 aatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 276  Q
    ||||||||||||  ||||| || |||||||||||||||| ||||||||| |||||    
T  29407496 aatacttgggtgatattgtcgtcggtgatattggccaactacaatgtcataagtg 29407550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 255
Target Start/End: Complemental strand, 29681940 - 29681903
Alignment:
Q  218 ggataatacttgggtggcattgtggttggtgatattgg 255  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  29681940 ggataatacttgggtgacattgtggttggtgacattgg 29681903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 5e-57; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 225 - 386
Target Start/End: Original strand, 11512393 - 11512554
Alignment:
Q  225 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacactt 324  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||       | ||||||||||||||    
T  11512393 acttgggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttttgatgttttgcacactt 11512492  T
Q  325 gtaacattgtggttggtaatgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 386  Q
    ||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||    
T  11512493 gtaacattgtggttggtaatgtcaccaatgtcaccaaccataatgtcacccaagtattatcc 11512554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 225 - 386
Target Start/End: Complemental strand, 22894051 - 22893891
Alignment:
Q  225 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacactt 324  Q
    ||||||||| ||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||| ||||||       ||||||||| ||||||    
T  22894051 acttgggtgacattgtggttggtgacattgaccaaccacaatgtcacaagtgactttcttctttttctttaacaagatttttt-gttgttttgtacactt 22893953  T
Q  325 gtaacattgtggttggtaatgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 386  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  22893952 gtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 22893891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 235 - 352
Target Start/End: Original strand, 31342023 - 31342140
Alignment:
Q  235 cattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgt 334  Q
    ||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||       ||||||||||||||||||||||||||    
T  31342023 cattgtggttggtgacattggccaaccacaatgtcacatgtagctttcttctttttctttcacaagatttttttgttgttttgcacacttgtaacattgt 31342122  T
Q  335 ggttggtaatgtcaccaa 352  Q
    ||||||||||||||||||    
T  31342123 ggttggtaatgtcaccaa 31342140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 251 - 352
Target Start/End: Original strand, 20286936 - 20287037
Alignment:
Q  251 attggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggtaatgtcacc 350  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  20286936 attggccaaccacaatgtcacatgtggctttcttctttttcttttacaagacttttttgttgttttgcacacttgtaacattgtggttggtaatgtcacc 20287035  T
Q  351 aa 352  Q
    ||    
T  20287036 aa 20287037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 237 - 299
Target Start/End: Original strand, 36738279 - 36738341
Alignment:
Q  237 ttgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaa 299  Q
    ||||||||||||||||||| |||||||||| ||||||||| ||||||||||| | ||||||||    
T  36738279 ttgtggttggtgatattggtcaaccacaatatcacaagtgtctttcttctttctttttcacaa 36738341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 17546997 - 17547037
Alignment:
Q  243 ttggtgatattggccaaccacaatgtcacaagtggctttct 283  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  17546997 ttggtgatattggccaaccataatgtcacaagtggctttct 17547037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 217 - 273
Target Start/End: Original strand, 48342785 - 48342841
Alignment:
Q  217 gggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaa 273  Q
    ||||||||||||||||| |||| ||||||| || ||||| |||||||||||||||||    
T  48342785 gggataatacttgggtgacattatggttggcgacattggtcaaccacaatgtcacaa 48342841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 225 - 276
Target Start/End: Complemental strand, 29081751 - 29081700
Alignment:
Q  225 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 276  Q
    |||||||||  |||||||||||||| ||||| ||||||||||||||||||||    
T  29081751 acttgggtgatattgtggttggtgacattggtcaaccacaatgtcacaagtg 29081700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 377
Target Start/End: Complemental strand, 29081655 - 29081598
Alignment:
Q  321 acttgtaacattgtggttggt-aatgtcaccaatatcaccaacgacaatgtcacccaa 377  Q
    |||||| |||||||||||||| ||||||||| || |||||||| ||||||||||||||    
T  29081655 acttgtgacattgtggttggtcaatgtcaccgatgtcaccaaccacaatgtcacccaa 29081598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 219 - 276
Target Start/End: Original strand, 32385358 - 32385415
Alignment:
Q  219 gataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 276  Q
    ||||||| ||||||| ||||||| ||||||| ||||| |||||||||||| |||||||    
T  32385358 gataatatttgggtgacattgtgattggtgacattggtcaaccacaatgtgacaagtg 32385415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 246 - 299
Target Start/End: Complemental strand, 32385489 - 32385436
Alignment:
Q  246 gtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaa 299  Q
    ||||||||||||||||||||||| | |||||  |||||||||| ||||||||||    
T  32385489 gtgatattggccaaccacaatgttaaaagtgtttttcttctttctctttcacaa 32385436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 48342356 - 48342320
Alignment:
Q  237 ttgtggttggtgatattggccaaccacaatgtcacaa 273  Q
    ||||||| |||||||||||||||||||||||||||||    
T  48342356 ttgtggtcggtgatattggccaaccacaatgtcacaa 48342320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 288
Target Start/End: Original strand, 29081625 - 29081668
Alignment:
Q  245 ggtgatattggccaaccacaatgtcacaagtggctttcttcttt 288  Q
    ||||| |||| |||||||||||||||||||| ||||||||||||    
T  29081625 ggtgacattgaccaaccacaatgtcacaagtagctttcttcttt 29081668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 287
Target Start/End: Original strand, 16205747 - 16205777
Alignment:
Q  257 caaccacaatgtcacaagtggctttcttctt 287  Q
    |||||||||||||||||||||||||||||||    
T  16205747 caaccacaatgtcacaagtggctttcttctt 16205777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 300
Target Start/End: Complemental strand, 20496614 - 20496553
Alignment:
Q  238 tgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaag 300  Q
    |||||||||||| |||| | ||||||||||||||| ||| ||||||||| | |||||||||||    
T  20496614 tgtggttggtgacattgtc-aaccacaatgtcacacgtgactttcttctctctctttcacaag 20496553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 255
Target Start/End: Original strand, 22893890 - 22893928
Alignment:
Q  217 gggataatacttgggtggcattgtggttggtgatattgg 255  Q
    ||||||||||||||||| ||||||||||||||| |||||    
T  22893890 gggataatacttgggtgacattgtggttggtgacattgg 22893928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 276
Target Start/End: Complemental strand, 31342165 - 31342108
Alignment:
Q  218 ggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 276  Q
    |||||||| ||||||| ||||||||||||||| |||  ||||||||||||| |||||||    
T  31342165 ggataatatttgggtgacattgtggttggtgacatt-accaaccacaatgttacaagtg 31342108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 387
Target Start/End: Original strand, 25790897 - 25790942
Alignment:
Q  342 aatgtcaccaatatcaccaacgacaatgtcacccaagtattatcca 387  Q
    |||||||||||| |||||||| | |||||||||||| |||||||||    
T  25790897 aatgtcaccaatgtcaccaaccataatgtcacccaaatattatcca 25790942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 379
Target Start/End: Original strand, 49159502 - 49159539
Alignment:
Q  342 aatgtcaccaatatcaccaacgacaatgtcacccaagt 379  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  49159502 aatgtcaccaatgtcaccaaccacaatgtcacccaagt 49159539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 254
Target Start/End: Complemental strand, 5633213 - 5633181
Alignment:
Q  222 aatacttgggtggcattgtggttggtgatattg 254  Q
    |||||||||||| ||||||||||||||||||||    
T  5633213 aatacttgggtgacattgtggttggtgatattg 5633181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 382
Target Start/End: Original strand, 5633181 - 5633213
Alignment:
Q  350 caatatcaccaacgacaatgtcacccaagtatt 382  Q
    ||||||||||||| |||||||||||||||||||    
T  5633181 caatatcaccaaccacaatgtcacccaagtatt 5633213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 11512557 - 11512517
Alignment:
Q  215 aggggataatacttgggtggcattgtggttggtgatattgg 255  Q
    ||||||||||||||||||| |||| |||||||||| |||||    
T  11512557 aggggataatacttgggtgacattatggttggtgacattgg 11512517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 276
Target Start/End: Complemental strand, 36738422 - 36738362
Alignment:
Q  216 ggggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 276  Q
    ||||| |||| ||||||| ||||||||||||||| ||||| |||| ||||| ||| |||||    
T  36738422 ggggaaaatatttgggtgacattgtggttggtgacattggtcaactacaatatcataagtg 36738362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 7e-56; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 224 - 387
Target Start/End: Original strand, 50754729 - 50754892
Alignment:
Q  224 tacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacact 323  Q
    ||||| |||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||       |||||||||||||||    
T  50754729 tactttggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttcttttacaagatttttttgttgttttgcacact 50754828  T
Q  324 tgtaacattgtggttggtaatgtcaccaatatcaccaacgacaatgtcacccaagtattatcca 387  Q
    |||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||    
T  50754829 tgtaacattgtggttgataatgtcaccaatgtcaccaaccacaatgtcacccaagtattatcca 50754892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 225 - 386
Target Start/End: Complemental strand, 28739465 - 28739304
Alignment:
Q  225 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacactt 324  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||| ||||||       ||| ||||||||||||    
T  28739465 acttgggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggcttttttctttttcttttacaagatttttttgttattttgcacactt 28739366  T
Q  325 gtaacattgtggttggtaatgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 386  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  28739365 gtaacattgtggttggtaatgtcaccaatatcaccaaccacaatatcacccaagtattatcc 28739304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 243 - 386
Target Start/End: Original strand, 9379842 - 9379985
Alignment:
Q  243 ttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggta 342  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  9379842 ttggtgatattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttttgttgttttgcacacttgtaacattgtggttggta 9379941  T
Q  343 atgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 386  Q
    |||| |||||| |||||||| |||||||||||||| ||||||||    
T  9379942 atgttaccaatgtcaccaaccacaatgtcacccaaatattatcc 9379985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 225 - 386
Target Start/End: Original strand, 28045325 - 28045486
Alignment:
Q  225 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngtt-gttttgcacact 323  Q
    ||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||        || |||||| |||||    
T  28045325 acttgggtgacattgtggttggtga-attggccaaccataatgtcacaagtggctttcttctttttctttaacaagattttcttttttgttttgtacact 28045423  T
Q  324 tgtaacattgtggttggtaatgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 386  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  28045424 tgtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 28045486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 243 - 386
Target Start/End: Original strand, 9884865 - 9885008
Alignment:
Q  243 ttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggta 342  Q
    ||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||| ||    
T  9884865 ttggtgacattggtcaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttttgttgttttgcacacttgtaacattgtggttgata 9884964  T
Q  343 atgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 386  Q
    ||||||| ||| |||||||| ||||| |||||||||||| ||||    
T  9884965 atgtcacgaatgtcaccaaccacaatatcacccaagtatcatcc 9885008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 243 - 343
Target Start/End: Complemental strand, 6539693 - 6539593
Alignment:
Q  243 ttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggta 342  Q
    ||||||| ||||| |||||||||||||||| ||| ||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  6539693 ttggtgacattggtcaaccacaatgtcacatgtgactttcttctttttctttcacaagacttttttgttgttttgcacacttgtaacattgtggttggta 6539594  T
Q  343 a 343  Q
    |    
T  6539593 a 6539593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 251 - 353
Target Start/End: Complemental strand, 15928200 - 15928097
Alignment:
Q  251 attggccaaccacaatgtcacaagtggctttcttctttttctttcacaaga-nnnnnnngttgttttgcacacttgtaacattgtggttggtaatgtcac 349  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||        ||||||||| ||||||||||||||||||||| |||||||||    
T  15928200 attggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttgttgttgttttgtacacttgtaacattgtggttgataatgtcac 15928101  T
Q  350 caat 353  Q
    ||||    
T  15928100 caat 15928097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 314 - 386
Target Start/End: Complemental strand, 44381981 - 44381908
Alignment:
Q  314 tttgcacacttgtaacattgtggttggt-aatgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 386  Q
    |||| |||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||    
T  44381981 tttgtacacgtgtaacattgtggttggtcaatgtcaccaatatcaccaaccacaatgtcacccaaatattatcc 44381908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 217 - 276
Target Start/End: Original strand, 10449446 - 10449505
Alignment:
Q  217 gggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 276  Q
    ||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||    
T  10449446 gggataatacttgggtgacattgtggttggtgacattgaccaaccacaatgtcacaagtg 10449505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 319 - 386
Target Start/End: Complemental strand, 35251234 - 35251165
Alignment:
Q  319 acacttgtaacattgtggttggtaatgtcaccaatatcaccaacgaca--atgtcacccaagtattatcc 386  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |  |||||| |||||||||||||    
T  35251234 acacttgtaacattgtggttggtaatgtcaccaatatcaccaaccatatcatgtcatccaagtattatcc 35251165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 319 - 382
Target Start/End: Original strand, 49200058 - 49200122
Alignment:
Q  319 acacttgtaacattgtggttggt-aatgtcaccaatatcaccaacgacaatgtcacccaagtatt 382  Q
    |||||||| |||||||||||||| ||||||| ||||||||||||| ||||||||||| |||||||    
T  49200058 acacttgtgacattgtggttggtcaatgtcatcaatatcaccaaccacaatgtcacctaagtatt 49200122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 246 - 386
Target Start/End: Complemental strand, 10449579 - 10449447
Alignment:
Q  246 gtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggtaatg 345  Q
    |||| ||||| ||||||||||||||||| |  ||||||||||| |||||||||| |       |||  |||| |||||||| ||||||||||||||        
T  10449579 gtgacattggtcaaccacaatgtcacaaatatctttcttctttctctttcacaatatttttttgtttctttgtacacttgtgacattgtggttggt---- 10449484  T
Q  346 tcaccaatatcaccaacgacaatgtcacccaagtattatcc 386  Q
        |||| |||||||| |||||||||||||||||||||||    
T  10449483 ----caatgtcaccaaccacaatgtcacccaagtattatcc 10449447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 232 - 276
Target Start/End: Complemental strand, 28810105 - 28810061
Alignment:
Q  232 tggcattgtggttggtgatattggccaaccacaatgtcacaagtg 276  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||    
T  28810105 tggcattgtggttggtgacattggtcaaccacaatgtcacaagtg 28810061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 218 - 273
Target Start/End: Original strand, 44801751 - 44801806
Alignment:
Q  218 ggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaa 273  Q
    ||||||||||| ||||  |||||||||| ||| |||||||||||||||||||||||    
T  44801751 ggataatacttaggtgatattgtggttgatgacattggccaaccacaatgtcacaa 44801806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 276
Target Start/End: Original strand, 44938794 - 44938852
Alignment:
Q  218 ggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 276  Q
    |||||| ||||||||| |||||||||| |||| |||| ||||||| |||||||||||||    
T  44938794 ggataacacttgggtgacattgtggttagtgacattgaccaaccagaatgtcacaagtg 44938852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 243 - 280
Target Start/End: Original strand, 4579192 - 4579229
Alignment:
Q  243 ttggtgatattggccaaccacaatgtcacaagtggctt 280  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  4579192 ttggtgacattggccaaccacaatgtcacaagtggctt 4579229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 255
Target Start/End: Complemental strand, 28045487 - 28045449
Alignment:
Q  217 gggataatacttgggtggcattgtggttggtgatattgg 255  Q
    ||||||||||||||||| ||||||||||||||| |||||    
T  28045487 gggataatacttgggtgacattgtggttggtgacattgg 28045449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 255
Target Start/End: Original strand, 28739303 - 28739341
Alignment:
Q  217 gggataatacttgggtggcattgtggttggtgatattgg 255  Q
    |||||||||||||||||  ||||||||||||||||||||    
T  28739303 gggataatacttgggtgatattgtggttggtgatattgg 28739341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 255
Target Start/End: Original strand, 44381907 - 44381945
Alignment:
Q  217 gggataatacttgggtggcattgtggttggtgatattgg 255  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  44381907 gggataatatttgggtgacattgtggttggtgatattgg 44381945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 299
Target Start/End: Complemental strand, 44938914 - 44938872
Alignment:
Q  257 caaccacaatgtcacaagtggctttcttctttttctttcacaa 299  Q
    |||||||||||  ||||||||||||||||||| ||||||||||    
T  44938914 caaccacaatggtacaagtggctttcttctttctctttcacaa 44938872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 288
Target Start/End: Original strand, 719023 - 719060
Alignment:
Q  251 attggccaaccacaatgtcacaagtggctttcttcttt 288  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  719023 attggacaaccacaatgtcacaagtggcttttttcttt 719060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 379
Target Start/End: Original strand, 6539683 - 6539720
Alignment:
Q  342 aatgtcaccaatatcaccaacgacaatgtcacccaagt 379  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  6539683 aatgtcaccaatatcatcaaccacaatgtcacccaagt 6539720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 301
Target Start/End: Original strand, 49199994 - 49200035
Alignment:
Q  260 ccacaatgtcacaagtggctttcttctttttctttcacaaga 301  Q
    ||||||||||||||||| |||| |||||||||||||| ||||    
T  49199994 ccacaatgtcacaagtgacttttttctttttctttcataaga 49200035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 255
Target Start/End: Complemental strand, 50754891 - 50754854
Alignment:
Q  218 ggataatacttgggtggcattgtggttggtgatattgg 255  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  50754891 ggataatacttgggtgacattgtggttggtgacattgg 50754854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 593876 - 593824
Alignment:
Q  218 ggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtca 270  Q
    |||||||||||||||| |||| | |||||| |||||||  |||||||||||||    
T  593876 ggataatacttgggtgacattatagttggtaatattggttaaccacaatgtca 593824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 7e-50; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 225 - 386
Target Start/End: Complemental strand, 2543895 - 2543735
Alignment:
Q  225 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacactt 324  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||| || |||||||||||||| |       |||||||| |||||||    
T  2543895 acttgggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggcttttttttttttctttcacaa-atttttttgttgttttacacactt 2543797  T
Q  325 gtaacattgtggttggtaatgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 386  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  2543796 gtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 2543735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 225 - 386
Target Start/End: Original strand, 11448063 - 11448224
Alignment:
Q  225 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacactt 324  Q
    ||||||||| ||||||||||||| |||||||||||||||||||| | | || ||||| |||||||||||||||||         ||||||||||||||||    
T  11448063 acttgggtgacattgtggttggtaatattggccaaccacaatgttatatgtagcttttttctttttctttcacaaattttttttgttgttttgcacactt 11448162  T
Q  325 gtaacattgtggttggtaatgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 386  Q
     ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  11448163 ataacattgtggttggtaatgtcaccaatatcaccaaccacaatgtcacccaagtattatcc 11448224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 218 - 298
Target Start/End: Complemental strand, 369578 - 369498
Alignment:
Q  218 ggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcaca 298  Q
    |||||||||||| ||| ||||||||||||||| |||| ||||||||||||||||||||| ||||||||||| |||||||||    
T  369578 ggataatacttgagtgacattgtggttggtgacattgaccaaccacaatgtcacaagtgtctttcttctttctctttcaca 369498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 218 - 276
Target Start/End: Complemental strand, 16193888 - 16193830
Alignment:
Q  218 ggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 276  Q
    |||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||    
T  16193888 ggataatacttgggtgacattgtggttggtgacattggtcaaccacaatgtcacaagtg 16193830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 246 - 386
Target Start/End: Original strand, 16193757 - 16193888
Alignment:
Q  246 gtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggtaatg 345  Q
    |||||||||||||| |||||||||||||||| ||||||||||| || ||||||| |        | |||||| |||||||| ||||||||||||          
T  16193757 gtgatattggccaatcacaatgtcacaagtgtctttcttctttctccttcacaatattttttt-tagttttgtacacttgtgacattgtggttg------ 16193849  T
Q  346 tcaccaatatcaccaacgacaatgtcacccaagtattatcc 386  Q
      |||||| |||||||| |||||||||||||||||||||||    
T  16193850 --accaatgtcaccaaccacaatgtcacccaagtattatcc 16193888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 218 - 275
Target Start/End: Original strand, 28581731 - 28581788
Alignment:
Q  218 ggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagt 275  Q
    ||||||||||||| || ||||||||||||||| |||||||||||||||||||| ||||    
T  28581731 ggataatacttggctgacattgtggttggtgacattggccaaccacaatgtcataagt 28581788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 230 - 286
Target Start/End: Complemental strand, 2980842 - 2980786
Alignment:
Q  230 ggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttct 286  Q
    |||| ||||||||||||||| ||||| |||||| |||||||||||||||||||||||    
T  2980842 ggtgacattgtggttggtgaaattggtcaaccataatgtcacaagtggctttcttct 2980786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 296
Target Start/End: Original strand, 35049754 - 35049816
Alignment:
Q  235 cattgtggttggtgatattggccaaccacaatgtcacaagtggc-tttcttctttttctttca 296  Q
    ||||| |||||||||| ||| ||||||||||| | ||||||||| ||||||||||||||||||    
T  35049754 cattgcggttggtgatgttgaccaaccacaatattacaagtggcttttcttctttttctttca 35049816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 218 - 255
Target Start/End: Complemental strand, 11448224 - 11448187
Alignment:
Q  218 ggataatacttgggtggcattgtggttggtgatattgg 255  Q
    |||||||||||||||| |||||||||||||||||||||    
T  11448224 ggataatacttgggtgacattgtggttggtgatattgg 11448187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 255
Target Start/End: Original strand, 2543734 - 2543772
Alignment:
Q  217 gggataatacttgggtggcattgtggttggtgatattgg 255  Q
    ||||||||||||||||| ||||||||||||||| |||||    
T  2543734 gggataatacttgggtgacattgtggttggtgacattgg 2543772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 299
Target Start/End: Complemental strand, 28581863 - 28581810
Alignment:
Q  246 gtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaa 299  Q
    ||||||||| |||||  |||| ||||||||| ||||||||||| ||||||||||    
T  28581863 gtgatattgaccaacatcaatatcacaagtgtctttcttctttctctttcacaa 28581810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 301
Target Start/End: Original strand, 1879187 - 1879243
Alignment:
Q  245 ggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaaga 301  Q
    ||||| ||||| |||||||||||||| ||||| ||||||||| | | ||||||||||    
T  1879187 ggtgacattggtcaaccacaatgtcataagtgactttcttctctatttttcacaaga 1879243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 1e-48; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 243 - 386
Target Start/End: Complemental strand, 31846925 - 31846782
Alignment:
Q  243 ttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggta 342  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||       |||||||||||||||||||||||| |||||||||    
T  31846925 ttggtgatattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttttgttgttttgcacacttgtaacattttggttggta 31846826  T
Q  343 atgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 386  Q
    ||||||| ||| |||||||| | |||||||||||||||||||||    
T  31846825 atgtcacgaatgtcaccaaccataatgtcacccaagtattatcc 31846782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 245 - 352
Target Start/End: Complemental strand, 6607527 - 6607420
Alignment:
Q  245 ggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggtaat 344  Q
    ||||| |||| ||||||| ||||||||| ||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||    
T  6607527 ggtgacattgaccaaccataatgtcacatgtggctttcttctttttctttcacaagatttttttgttgttttgcacacttgtaacattgtggttggtaat 6607428  T
Q  345 gtcaccaa 352  Q
    ||||||||    
T  6607427 gtcaccaa 6607420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 244 - 386
Target Start/End: Original strand, 31012152 - 31012294
Alignment:
Q  244 tggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggtaa 343  Q
    |||||| |||| ||||||||||||||||| ||| |||| |||||||||||||||||         ||||||||||| |||||||| ||||||||||||||    
T  31012152 tggtgacattgaccaaccacaatgtcacatgtgacttttttctttttctttcacaatttttttttgttgttttgcatacttgtaatattgtggttggtaa 31012251  T
Q  344 tgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 386  Q
    |||||| ||| |||||||| ||||||||||| |||||||||||    
T  31012252 tgtcactaatgtcaccaaccacaatgtcacctaagtattatcc 31012294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 245 - 370
Target Start/End: Original strand, 6608375 - 6608500
Alignment:
Q  245 ggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnn-gttgttttgcacacttgtaacattgtggttggtaa 343  Q
    ||||| |||||||||||| ||||||||| ||||||| ||||||||||||||| ||||        ||||||||||| |||||||||||||||||||||||    
T  6608375 ggtgacattggccaaccataatgtcacacgtggcttccttctttttctttca-aagattctttttgttgttttgcagacttgtaacattgtggttggtaa 6608473  T
Q  344 tgtcaccaatatcaccaacgacaatgt 370  Q
    |||||||||| |||||||| |||||||    
T  6608474 tgtcaccaatgtcaccaaccacaatgt 6608500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 309 - 385
Target Start/End: Original strand, 2254622 - 2254698
Alignment:
Q  309 gttgttttgcacacttgtaacattgtggttggtaatgtcaccaatatcaccaacgacaatgtcacccaagtattatc 385  Q
    ||||||||| ||||||||||||||||| |||||||| ||| |||| |||| ||| ||||||||||  ||||||||||    
T  2254622 gttgttttgtacacttgtaacattgtgattggtaatatcatcaatgtcacgaaccacaatgtcacataagtattatc 2254698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 235 - 295
Target Start/End: Original strand, 54223569 - 54223629
Alignment:
Q  235 cattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttc 295  Q
    ||||||||||||||| |||| |||||||||||||||||| || ||||||||||| ||||||    
T  54223569 cattgtggttggtgacattgaccaaccacaatgtcacaaatgtctttcttctttctctttc 54223629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 225 - 299
Target Start/End: Original strand, 11392307 - 11392379
Alignment:
Q  225 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaa 299  Q
    ||||||||| ||||||||||| ||| ||||||| |||||||||||||||  ||||||||||| | ||||||||||    
T  11392307 acttgggtgacattgtggttgatgaaattggcctaccacaatgtcacaa--ggctttcttctctctctttcacaa 11392379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 313 - 379
Target Start/End: Original strand, 46321429 - 46321496
Alignment:
Q  313 ttttgcacacttgtaacattgtggttggt-aatgtcaccaatatcaccaacgacaatgtcacccaagt 379  Q
    ||||| ||| |||| |||||||||||||| ||||||||||||||||||||| |||||||||| |||||    
T  46321429 ttttgtacagttgtgacattgtggttggtcaatgtcaccaatatcaccaaccacaatgtcactcaagt 46321496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 218 - 276
Target Start/End: Complemental strand, 36273116 - 36273058
Alignment:
Q  218 ggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 276  Q
    |||||| ||||||||| ||||||||| |||||||||| ||||||||||| |||||||||    
T  36273116 ggataacacttgggtgacattgtggtcggtgatattgaccaaccacaatatcacaagtg 36273058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 235 - 285
Target Start/End: Complemental strand, 38324974 - 38324924
Alignment:
Q  235 cattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttc 285  Q
    |||||||||||||||||||||||||||| ||| ||||| ||||||||||||    
T  38324974 cattgtggttggtgatattggccaaccataatatcacatgtggctttcttc 38324924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 235 - 296
Target Start/End: Complemental strand, 41306750 - 41306689
Alignment:
Q  235 cattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttca 296  Q
    |||||||||||||||||||| ||||||| |||||||||| ||  |||||||| |||||||||    
T  41306750 cattgtggttggtgatattgaccaaccataatgtcacaaatgtatttcttctctttctttca 41306689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 243 - 300
Target Start/End: Original strand, 43063542 - 43063599
Alignment:
Q  243 ttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaag 300  Q
    ||||||| ||| |||||||||||||||||||||||||||| ||  |||||||||||||    
T  43063542 ttggtgacattagccaaccacaatgtcacaagtggctttcatcactttctttcacaag 43063599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 228 - 276
Target Start/End: Complemental strand, 30023694 - 30023646
Alignment:
Q  228 tgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 276  Q
    |||||| ||||||||||||||| |||| |||||||||||||||||||||    
T  30023694 tgggtgacattgtggttggtgacattgaccaaccacaatgtcacaagtg 30023646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 384
Target Start/End: Original strand, 32008336 - 32008402
Alignment:
Q  319 acacttgtaacattgtggttggt-aatgtcaccaatatcaccaacgacaatgtcacccaagtattat 384  Q
    |||||||||||||| |||||||| ||| |||| ||| |||||||| |||||||||||||||| ||||    
T  32008336 acacttgtaacattttggttggtcaatatcactaatgtcaccaaccacaatgtcacccaagtgttat 32008402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 276
Target Start/End: Original strand, 33380606 - 33380660
Alignment:
Q  222 aatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 276  Q
    ||||||| | || ||||||||||||||||||||| |||||||||||| |||||||    
T  33380606 aatacttagatgacattgtggttggtgatattggtcaaccacaatgtaacaagtg 33380660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 272
Target Start/End: Original strand, 53261093 - 53261143
Alignment:
Q  222 aatacttgggtggcattgtggttggtgatattggccaaccacaatgtcaca 272  Q
    ||||||| |||| ||||||||||||||| |||| |||||||||||||||||    
T  53261093 aatacttaggtgacattgtggttggtgacattgaccaaccacaatgtcaca 53261143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 245 - 286
Target Start/End: Complemental strand, 9712984 - 9712943
Alignment:
Q  245 ggtgatattggccaaccacaatgtcacaagtggctttcttct 286  Q
    ||||| |||| |||||||||||||||||||||||||||||||    
T  9712984 ggtgacattgaccaaccacaatgtcacaagtggctttcttct 9712943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 286
Target Start/End: Original strand, 22435379 - 22435419
Alignment:
Q  246 gtgatattggccaaccacaatgtcacaagtggctttcttct 286  Q
    |||| |||||| |||||||||||||||||||||||||||||    
T  22435379 gtgacattggcaaaccacaatgtcacaagtggctttcttct 22435419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 384
Target Start/End: Complemental strand, 15032020 - 15031965
Alignment:
Q  330 attgtggttggt-aatgtcaccaatatcaccaacgacaatgtcacccaagtattat 384  Q
    |||||||||||| |||||||| ||||||| |||| |||||||||||||||| ||||    
T  15032020 attgtggttggtcaatgtcacgaatatcatcaaccacaatgtcacccaagtgttat 15031965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 379
Target Start/End: Original strand, 31846900 - 31846952
Alignment:
Q  328 acattgtggttggt-aatgtcaccaatatcaccaacgacaatgtcacccaagt 379  Q
    |||||||||||||  ||| |||||||| |||||||| ||||||||||||||||    
T  31846900 acattgtggttggccaatatcaccaatgtcaccaaccacaatgtcacccaagt 31846952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 273
Target Start/End: Complemental strand, 40789311 - 40789263
Alignment:
Q  225 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaa 273  Q
    ||||||||| ||| | | ||||||||||||||||| |||||||||||||    
T  40789311 acttgggtgacatagagtttggtgatattggccaatcacaatgtcacaa 40789263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 379
Target Start/End: Complemental strand, 54613082 - 54613030
Alignment:
Q  328 acattgtggttggt-aatgtcaccaatatcaccaacgacaatgtcacccaagt 379  Q
    |||||||||||||| |||| ||| ||| |||||||| ||||||||||||||||    
T  54613082 acattgtggttggtcaatgccactaatgtcaccaaccacaatgtcacccaagt 54613030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 225 - 386
Target Start/End: Complemental strand, 5215722 - 5215560
Alignment:
Q  225 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggcttt-cttctttttctttcacaagannnnnnngttgttttgcacact 323  Q
    ||||||||| ||||||||||| ||| ||||| |||||||||| ||||| |||||||| ||| ||||||||||||||||       ||||||||| |||||    
T  5215722 acttgggtgacattgtggttgatgacattggtcaaccacaatatcacatgtggcttttcttatttttctttcacaagattttgttgttgttttgtacact 5215623  T
Q  324 tgtaacattgtggttggtaatgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 386  Q
    |||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||    
T  5215622 tgtaacattgtggttggtaatgtcaccaatgttaccaaccacaatgtcacccaagtattatcc 5215560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 225 - 359
Target Start/End: Complemental strand, 9177997 - 9177863
Alignment:
Q  225 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacactt 324  Q
    |||||| || |||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||| |        |||||||||||||||    
T  9177997 acttggatgacattgtggttggtgatattggccaaccacaatatcacatgtgactttcttctttttctttcacaatatttttttattgttttgcacactt 9177898  T
Q  325 gtaacattgtggttggtaatgtcaccaatatcacc 359  Q
     ||||||||||||||||| ||||| |||| |||||    
T  9177897 ataacattgtggttggtagtgtcatcaatgtcacc 9177863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 243 - 359
Target Start/End: Complemental strand, 29385419 - 29385303
Alignment:
Q  243 ttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggta 342  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||||| | |||       ||||||||||||||||||||||||||||||||||    
T  29385419 ttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcgctagatttttttgttgttttgcacacttgtaacattgtggttggta 29385320  T
Q  343 atgtcaccaatatcacc 359  Q
    || |||| ||| |||||    
T  29385319 atatcactaatgtcacc 29385303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 243 - 370
Target Start/End: Original strand, 19417469 - 19417595
Alignment:
Q  243 ttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggta 342  Q
    ||||||| ||||| |||| ||||||||||| ||| |||||||  |||||||||||||||       ||||||||||||||||| ||||||||||||||||    
T  19417469 ttggtgacattggtcaactacaatgtcacatgtgactttctttcttttctttcacaagatttttttgttgttttgcacacttg-aacattgtggttggta 19417567  T
Q  343 atgtcaccaatatcaccaacgacaatgt 370  Q
    ||||||||||| |||||||| |||||||    
T  19417568 atgtcaccaatgtcaccaaccacaatgt 19417595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 251 - 387
Target Start/End: Original strand, 36568736 - 36568872
Alignment:
Q  251 attggccaaccacaa-tgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggtaatgtcac 349  Q
    ||||| ||||||||| ||||||| |||||||||||| ||||||||||||| |       ||||||||| ||||||||||||||||||||| | |||||||    
T  36568736 attggtcaaccacaaatgtcacatgtggctttcttccttttctttcacaatatttttt-gttgttttgtacacttgtaacattgtggttgattatgtcac 36568834  T
Q  350 caatatcaccaacgacaatgtcacccaagtattatcca 387  Q
     ||| |||||||| ||||||||||  ||||||||||||    
T  36568835 taatgtcaccaaccacaatgtcacataagtattatcca 36568872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 251 - 301
Target Start/End: Original strand, 1840003 - 1840053
Alignment:
Q  251 attggccaaccacaatgtcacaagtggctttcttctttttctttcacaaga 301  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1840003 attggccaaccacaatgtcacatgtggctttcttctttttctttcacaaga 1840053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 227 - 299
Target Start/End: Complemental strand, 23219432 - 23219360
Alignment:
Q  227 ttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaa 299  Q
    ||||||| |||||||||||||||  ||||||||||||||||||| |  || ||||||||||||||||||||||    
T  23219432 ttgggtgacattgtggttggtgaccttggccaaccacaatgtcatatatgactttcttctttttctttcacaa 23219360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 218 - 300
Target Start/End: Original strand, 896268 - 896350
Alignment:
Q  218 ggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaag 300  Q
    |||||| |||||||||  |||||||||||||||||||  |||||||||||||||| | || |||||||||| ||||| |||||    
T  896268 ggataacacttgggtgagattgtggttggtgatattgatcaaccacaatgtcacaggcggttttcttctttctcttttacaag 896350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 235 - 358
Target Start/End: Complemental strand, 25879447 - 25879328
Alignment:
Q  235 cattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgt 334  Q
    ||||||||||||||||||| |||||||||||||||||| |||  |||    |||||   ||||||||        |||||||  ||||||||||||||||    
T  25879447 cattgtggttggtgatattagccaaccacaatgtcacatgtgatttt----ttttttcgtcacaagacttttttattgttttatacacttgtaacattgt 25879352  T
Q  335 ggttggtaatgtcaccaatatcac 358  Q
    ||||| ||||||||||||||||||    
T  25879351 ggttgataatgtcaccaatatcac 25879328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 235 - 288
Target Start/End: Complemental strand, 42772107 - 42772054
Alignment:
Q  235 cattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttcttt 288  Q
    ||||||||||||||| |||| ||||||||||||||||||||| |||||||||||    
T  42772107 cattgtggttggtgacattgaccaaccacaatgtcacaagtgtctttcttcttt 42772054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 238 - 301
Target Start/End: Original strand, 31848177 - 31848239
Alignment:
Q  238 tgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaaga 301  Q
    ||||||||||||||||| |||||||||| ||||||||||| |||||||| | ||||||||||||    
T  31848177 tgtggttggtgatattgaccaaccacaaggtcacaagtgg-tttcttctctctctttcacaaga 31848239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 320 - 380
Target Start/End: Complemental strand, 7137698 - 7137637
Alignment:
Q  320 cacttgtaacattgtggttggt-aatgtcaccaatatcaccaacgacaatgtcacccaagta 380  Q
    ||||||| |||||||||||||| |||||||||||| ||||||||  ||||||||||||||||    
T  7137698 cacttgtgacattgtggttggtcaatgtcaccaatttcaccaactgcaatgtcacccaagta 7137637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 299
Target Start/End: Original strand, 7137665 - 7137721
Alignment:
Q  243 ttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaa 299  Q
    ||||||| |||| ||||||||||||||||||||| |||||||| || ||||||||||    
T  7137665 ttggtgacattgaccaaccacaatgtcacaagtgactttcttcattctctttcacaa 7137721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 41288041 - 41287997
Alignment:
Q  218 ggataatacttgggtggcattgtggttggtgatattggccaacca 262  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||    
T  41288041 ggataatatttgggtgacattgtggttggtgatattggccaacca 41287997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 217 - 272
Target Start/End: Complemental strand, 12605715 - 12605660
Alignment:
Q  217 gggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcaca 272  Q
    ||||||||||||  ||| ||||||||||||||| ||||| ||||||||||||||||    
T  12605715 gggataatacttaagtgacattgtggttggtgacattggtcaaccacaatgtcaca 12605660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 379
Target Start/End: Original strand, 29385394 - 29385446
Alignment:
Q  328 acattgtggttggt-aatgtcaccaatatcaccaacgacaatgtcacccaagt 379  Q
    |||||||||||||  |||||||||||| |||||||| ||||||||||||||||    
T  29385394 acattgtggttggccaatgtcaccaatgtcaccaaccacaatgtcacccaagt 29385446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 287
Target Start/End: Complemental strand, 5998659 - 5998620
Alignment:
Q  248 gatattggccaaccacaatgtcacaagtggctttcttctt 287  Q
    ||||||||||||||||||| ||||||||| ||||||||||    
T  5998659 gatattggccaaccacaatatcacaagtgactttcttctt 5998620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 281
Target Start/End: Complemental strand, 37325664 - 37325634
Alignment:
Q  251 attggccaaccacaatgtcacaagtggcttt 281  Q
    |||||||||||||||||||||||||||||||    
T  37325664 attggccaaccacaatgtcacaagtggcttt 37325634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 387
Target Start/End: Original strand, 41288004 - 41288042
Alignment:
Q  349 ccaatatcaccaacgacaatgtcacccaagtattatcca 387  Q
    |||||||||||||| |||||||||||||| |||||||||    
T  41288004 ccaatatcaccaaccacaatgtcacccaaatattatcca 41288042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 379
Target Start/End: Complemental strand, 19417479 - 19417442
Alignment:
Q  342 aatgtcaccaatatcaccaacgacaatgtcacccaagt 379  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  19417479 aatgtcaccaatgtcaccaaccacaatgtcacccaagt 19417442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 9e-34; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 245 - 386
Target Start/End: Original strand, 43465112 - 43465256
Alignment:
Q  245 ggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacatt---gtggttggt 341  Q
    ||||| |||||||||||||||| ||||| ||||||||||||||||| ||||||||||       ||||||||||||||||||||||||   |||||||||    
T  43465112 ggtgacattggccaaccacaatatcacatgtggctttcttctttttttttcacaagatttttttgttgttttgcacacttgtaacattgtggtggttggt 43465211  T
Q  342 aatgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 386  Q
    ||| |||||||| |||||||| | ||||||| |||||||||||||    
T  43465212 aatttcaccaatgtcaccaaccagaatgtcatccaagtattatcc 43465256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 246 - 387
Target Start/End: Original strand, 31470771 - 31470914
Alignment:
Q  246 gtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggt-aat 344  Q
    |||| |||| ||||||||||||||||||||  | |||||||||||||||||||| |       |||  |||| |||||||| |||||||||||||  |||    
T  31470771 gtgacattgaccaaccacaatgtcacaagtatcattcttctttttctttcacaatatttttttgtttctttgtacacttgtgacattgtggttggccaat 31470870  T
Q  345 gtcaccaatatcaccaacgacaatgtca-cccaagtattatcca 387  Q
    |||||||||| ||||||| ||||| ||| |||||||||||||||    
T  31470871 gtcaccaataccaccaaccacaatatcaccccaagtattatcca 31470914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 314 - 386
Target Start/End: Complemental strand, 16687585 - 16687512
Alignment:
Q  314 tttgcacacttgtaacattgtggttgg-taatgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 386  Q
    |||| |||||||  ||||||||||| | |||||||||||||||||||||| ||||||||| |||||||||||||    
T  16687585 tttgtacacttgggacattgtggttagctaatgtcaccaatatcaccaaccacaatgtcatccaagtattatcc 16687512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 386
Target Start/End: Original strand, 1605038 - 1605082
Alignment:
Q  342 aatgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 386  Q
    |||||||||||| |||||||| |||||||||||||||||||||||    
T  1605038 aatgtcaccaatgtcaccaactacaatgtcacccaagtattatcc 1605082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 218 - 275
Target Start/End: Complemental strand, 4531902 - 4531845
Alignment:
Q  218 ggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagt 275  Q
    |||||| |||| | || |||||| ||||||||||||| ||||||||||||||||||||    
T  4531902 ggataaaacttagatgacattgtagttggtgatattgaccaaccacaatgtcacaagt 4531845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 350
Target Start/End: Complemental strand, 7931655 - 7931550
Alignment:
Q  246 gtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggt-aat 344  Q
    |||| |||||| |||||||||||||||| || ||||||||||| ||||||| || |       |||  |||| |||||||| |||||||||||||| |||    
T  7931655 gtgacattggcaaaccacaatgtcacaaatgtctttcttctttctctttcataatatttttttgtttctttgtacacttgtgacattgtggttggtcaat 7931556  T
Q  345 gtcacc 350  Q
    ||||||    
T  7931555 gtcacc 7931550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 255
Target Start/End: Original strand, 16687511 - 16687549
Alignment:
Q  217 gggataatacttgggtggcattgtggttggtgatattgg 255  Q
    |||||||||||||| || |||||||||||||||||||||    
T  16687511 gggataatacttggatgacattgtggttggtgatattgg 16687549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 296
Target Start/End: Complemental strand, 33763589 - 33763539
Alignment:
Q  246 gtgatattggccaaccacaatgtcacaagtggctttcttctttttctttca 296  Q
    |||| ||||| |||| ||||| ||||||||| |||||||||||||||||||    
T  33763589 gtgacattggtcaactacaatatcacaagtgcctttcttctttttctttca 33763539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 276
Target Start/End: Complemental strand, 31470878 - 31470845
Alignment:
Q  243 ttggtgatattggccaaccacaatgtcacaagtg 276  Q
    ||||||| ||||||||||||||||||||||||||    
T  31470878 ttggtgacattggccaaccacaatgtcacaagtg 31470845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 272
Target Start/End: Complemental strand, 45051380 - 45051343
Alignment:
Q  235 cattgtggttggtgatattggccaaccacaatgtcaca 272  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  45051380 cattgtggttggtgacattggccgaccacaatgtcaca 45051343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 266
Target Start/End: Original strand, 33763461 - 33763505
Alignment:
Q  222 aatacttgggtggcattgtggttggtgatattggccaaccacaat 266  Q
    |||| ||||||| ||||||||||||||| ||||| ||||||||||    
T  33763461 aataattgggtgacattgtggttggtgacattggtcaaccacaat 33763505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 342 - 387
Target Start/End: Complemental strand, 12270 - 12225
Alignment:
Q  342 aatgtcaccaatatcaccaacgacaatgtcacccaagtattatcca 387  Q
    ||||||| |||| |||||||| ||||||||||||||||||||||||    
T  12270 aatgtcatcaatgtcaccaactacaatgtcacccaagtattatcca 12225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 246 - 299
Target Start/End: Complemental strand, 12338 - 12285
Alignment:
Q  246 gtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaa 299  Q
    |||| |||| ||||||||||||||||||||| | ||||||||| ||||||||||    
T  12338 gtgacattgaccaaccacaatgtcacaagtgtccttcttctttctctttcacaa 12285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1315 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 276
Target Start/End: Original strand, 1819 - 1870
Alignment:
Q  225 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 276  Q
    ||||||||| ||||||||||||||| ||||  |||||||||| |||||||||    
T  1819 acttgggtgacattgtggttggtgacattgatcaaccacaatatcacaagtg 1870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1293 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 276
Target Start/End: Complemental strand, 252 - 201
Alignment:
Q  225 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 276  Q
    ||||||||| ||||||||||||||| ||||  |||||||||| |||||||||    
T  252 acttgggtgacattgtggttggtgacattgatcaaccacaatatcacaagtg 201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 301
Target Start/End: Original strand, 507740 - 507798
Alignment:
Q  243 ttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaaga 301  Q
    ||||||| |||| |||| |||||| | |||||||| |||||||||| ||||||||||||    
T  507740 ttggtgacattgaccaatcacaatattacaagtggatttcttctttctctttcacaaga 507798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 276
Target Start/End: Original strand, 26500 - 26557
Alignment:
Q  219 gataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 276  Q
    ||||||||||  ||| ||||||||||||||| ||||| ||| |||||| |||||||||    
T  26500 gataatacttatgtgacattgtggttggtgacattggtcaaacacaatatcacaagtg 26557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University