View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6440_low_13 (Length: 212)
Name: NF6440_low_13
Description: NF6440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6440_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 17 - 196
Target Start/End: Complemental strand, 29726790 - 29726611
Alignment:
| Q |
17 |
atggtgatgttgtgttatagttggggaataaaggttctaactgtttttgcattctcaaccaataattggattcgacctaaggtcattttaatttcacttg |
116 |
Q |
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| T |
29726790 |
atggtgatgttgtgttatagttggggaataaaggttctaactgtttttgcattctcaaccgataattggattcgacctaaggtcattttaatttcacttg |
29726691 |
T |
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| Q |
117 |
ttagtttagttcactttgattaacatgacattagttgttgatagtggttatgcttggttttgattattggtggtgatgat |
196 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
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| T |
29726690 |
ttagtttagttcactttgatgaacatgacattagttgttgatagtggttatgcttggttttcattattggtggtggtgat |
29726611 |
T |
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