View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6440_low_6 (Length: 284)
Name: NF6440_low_6
Description: NF6440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6440_low_6 |
 | |
|
| [»] scaffold0041 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0041 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 19 - 282
Target Start/End: Original strand, 90080 - 90343
Alignment:
| Q |
19 |
aatagatgtgagggagagaaggaatactagagagtagagactagagatccaatatctctttaagaaattactccgattctgttttatcttgtattatgtg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
90080 |
aatagatgtgagggagagaaggaatactagagagtagagactagagatccaatatctctttaagaaattactccgattctgttttatcttgtattatgtg |
90179 |
T |
|
| Q |
119 |
cattgtaaggctgaaattttatatcatgtcactgaaaatattggttcatgttccaaagaattgtccaatactcagcttccatttcaataggcaacaagaa |
218 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
90180 |
caatgtaaggctgaaattttatatcatgtcactgaaaatattggttcatgttccaaagaattgtccaatactcagcttccatttcaataggcaacaagaa |
90279 |
T |
|
| Q |
219 |
cggatctaagctttgttagtttcaatttttaatgtaattttgtatctacctattcggcattcat |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
90280 |
cggatctaagctttgttagtttcaatttttaatgtaattttgtatctacctattcggcattcat |
90343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 19 - 282
Target Start/End: Complemental strand, 40876203 - 40875940
Alignment:
| Q |
19 |
aatagatgtgagggagagaaggaatactagagagtagagactagagatccaatatctctttaagaaattactccgattctgttttatcttgtattatgtg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40876203 |
aatagatgtgagggagagaaggaatactagagagtagagactagagatccaatatctctttaagaaattactccgattctgttttatcttgtattatgtg |
40876104 |
T |
|
| Q |
119 |
cattgtaaggctgaaattttatatcatgtcactgaaaatattggttcatgttccaaagaattgtccaatactcagcttccatttcaataggcaacaagaa |
218 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40876103 |
caatgtaaggctgaaattttatatcatgtcactgaaaatattggttcatgttccaaagaattgtccaatactcagcttccatttcaataggcaacaagaa |
40876004 |
T |
|
| Q |
219 |
cggatctaagctttgttagtttcaatttttaatgtaattttgtatctacctattcggcattcat |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40876003 |
cggatctaagctttgttagtttcaatttttaatgtaattttgtatctacctattcggcattcat |
40875940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University