View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6440_low_7 (Length: 246)
Name: NF6440_low_7
Description: NF6440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6440_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 4856797 - 4856565
Alignment:
| Q |
1 |
tcatagatgcatagatgagcatgagcgatatatagttcttagtgaagtagagttagaattactttggtgatgcttaagctatcctctttcccttttagag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4856797 |
tcatagatgcatagatgagcatgagcgatatatagttcttagtgaagtagagttatgattactttggtgatgcttaagctatcctctttcccttttagag |
4856698 |
T |
|
| Q |
101 |
tgtaatcattttctaacttttgtttctcatttaatgtggctattatgttttcatctatctcttcttttcttcccgtttttgaggttaagctcaacacgag |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4856697 |
tgtaatcattttgtaacttttgtttctcatttaatgtggctattatgttttcatctatttcttcttttcttcccgcttttgaggttaagctcaacacgag |
4856598 |
T |
|
| Q |
201 |
ttaaaccccttttgttgtttagacatgatgatg |
233 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |
|
|
| T |
4856597 |
ttaaaccccttttgttgtttagatatgatgatg |
4856565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 33 - 118
Target Start/End: Original strand, 26099935 - 26100020
Alignment:
| Q |
33 |
tagttcttagtgaagtagagttagaattactttggtgatgcttaagctatcctctttcccttttagagtgtaatcattttctaact |
118 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||| ||||||| |||||||| || | |||||||||| ||||||||| |
|
|
| T |
26099935 |
tagttcttagtgaattagagttataattactttggtgatgtttaagctcacctctttcatttgtggagtgtaatcggtttctaact |
26100020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 125
Target Start/End: Original strand, 34851441 - 34851483
Alignment:
| Q |
83 |
cctctttcccttttagagtgtaatcattttctaacttttgttt |
125 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
34851441 |
cctctttccttttttgagtgtaatcattttctaacttttgttt |
34851483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 91
Target Start/End: Complemental strand, 33660935 - 33660877
Alignment:
| Q |
33 |
tagttcttagtgaagtagagttagaattactttggtgatgcttaagctatcctctttcc |
91 |
Q |
| |
|
||||| |||||||||||||||||||||| ||| | |||||| |||||| ||||||||| |
|
|
| T |
33660935 |
tagtttttagtgaagtagagttagaatttcttggatgatgcataagctcgcctctttcc |
33660877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 30500475 - 30500522
Alignment:
| Q |
33 |
tagttcttagtgaagtagagttagaattactttggtgatgcttaagct |
80 |
Q |
| |
|
|||||||||||||| |||| |||| ||||||||||||||||| ||||| |
|
|
| T |
30500475 |
tagttcttagtgaattagatttaggattactttggtgatgctcaagct |
30500522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University