View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6441_high_1 (Length: 681)
Name: NF6441_high_1
Description: NF6441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6441_high_1 |
 | |
|
| [»] scaffold0187 (1 HSPs) |
| | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 665; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 665; E-Value: 0
Query Start/End: Original strand, 1 - 665
Target Start/End: Original strand, 13219755 - 13220419
Alignment:
| Q |
1 |
taatgatgtcatgcttgcttttgggactccggagaaacaaatcttgatcgaacctatatttgcccaatggatacaatctgctcatggtaaaacttcatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13219755 |
taatgatgtcatgcttgcttttgggactccggagaaacaaatcttgatcgaacctatatttgcccaatggatacaatctgctcatggtaaaacttcatat |
13219854 |
T |
|
| Q |
101 |
gggttcgatgtacttttatcttcaacgaatagtccggcgctcagtgcggggcgaagcatatggttgcctggttggttaaatgctattaatgagaatagta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13219855 |
gggttcgatgtacttttatcttcaacgaatagtccggcgctcagtgcggggcgaagcatatggttgcctggttggttaaatgctattaatgagaatagta |
13219954 |
T |
|
| Q |
201 |
attctctattcttaacaataggccctggagacttcttggttcatcatgctattgctcttggtttacatacaactacattgatcttagtaaaaggtgcttt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13219955 |
attctctattcttaacaataggccctggagacttcttggttcatcatgctattgctcttggtttacatacaactacattgatcttagtaaaaggtgcttt |
13220054 |
T |
|
| Q |
301 |
ggatgcacgcggttccaagttaatgccggataaaaaggattttggttatagttttccttgcgatggtccgggacgaggtggtacttgtgatatttcggct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13220055 |
ggatgcacgcggttccaagttaatgccggataaaaaggattttggttatagttttccttgcgatggtccgggacgaggtggtacttgtgatatttcggct |
13220154 |
T |
|
| Q |
401 |
tgggacgcattttatttggcagttttctggatgttaaataccattggatgggttactttttattggcattggaagcacattacattatggcagggtaatg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13220155 |
tgggacgcattttatttggcagttttctggatgttaaataccattggatgggttactttttattggcattggaagcacattacattatggcagggtaatg |
13220254 |
T |
|
| Q |
501 |
tttcacaatttaatgaatcttctacctatttgatgggatggttaagagattatctatggttaaattcttcacaacttatcaatggatataacccttttgg |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13220255 |
tttcacaatttaatgaatcttctacctatttgatgggatggttaagagattatctatggttaaattcttcacaacttatcaatggatataacccttttgg |
13220354 |
T |
|
| Q |
601 |
tatgaatagtttatcagtctgggcgtggatgttcttatttggacatcttgtttgggctactggat |
665 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13220355 |
tatgaatagtttatcagtctgggcgtggatgttcttatttggacatcttgtttgggctactggat |
13220419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 372 - 473
Target Start/End: Complemental strand, 21660074 - 21659973
Alignment:
| Q |
372 |
gacgaggtggtacttgtgatatttcggcttgggacgcattttatttggcagttttctggatgttaaataccattggatgggttactttttattggcattg |
471 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21660074 |
gacgaggtggtacttgtgatatttcggcttgggacgcattttatttggcagttttctggatgttaaataccattggatgggttactttttattggcattg |
21659975 |
T |
|
| Q |
472 |
ga |
473 |
Q |
| |
|
|| |
|
|
| T |
21659974 |
ga |
21659973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 40 - 616
Target Start/End: Original strand, 30215 - 30792
Alignment:
| Q |
40 |
aatcttgatcgaacctatatttgccc-aatggatacaatctgctcatggtaaaacttcatatgggttcgatgtacttttatcttcaacgaatagtccggc |
138 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
30215 |
aatcttgatcgaacctatatttgccccaatggatacaatctgctcatggtaaaacttcatatgggtacgatgtacttttatcttcaacgaatagtccggc |
30314 |
T |
|
| Q |
139 |
gctcagtgcggggcgaagcatatggttgcctggttggttaaatgctattaatgagaatagtaattctctattcttaacaataggccctggagacttcttg |
238 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30315 |
gctcagtgcggggcgaagcatatggtttcctggttggttaaatgctattaatgagaatagtaattctctattcttaacaataggccctggagacttcttg |
30414 |
T |
|
| Q |
239 |
gttcatcatgctattgctcttggtttacatacaactacattgatcttagtaaaaggtgctttggatgcacgcggttccaagttaatgccggataaaaagg |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30415 |
gttcatcatgctattgctcttggtttacatacaactacattgatcttagtaaaaggtgctctggatgcacgcggttccaagttaatgccggataaaaagg |
30514 |
T |
|
| Q |
339 |
attttggttatagttttccttgcgatggtccgggacgaggtggtacttgtgatatttcggcttgggacgcattttatttggcagttttctggatgttaaa |
438 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
30515 |
attttggttatagttttccttgcgatggtccgagacgaggtggtacttgtgatatttcggcttgggacgcattttatttggcaattttctggatgttaaa |
30614 |
T |
|
| Q |
439 |
taccattggatgggttactttttattggcattggaagcacattacattatggcagggtaatgtttcacaatttaatgaatcttctacctatttgatggga |
538 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30615 |
taccattggatgggttactttttattggcattggaagcacattacattatggcagggtaatgtttcacaatttaatgaatcttctacctatttgatggga |
30714 |
T |
|
| Q |
539 |
tggttaagagattatctatggttaaattcttcacaacttatcaatggatataacccttttggtatgaatagtttatca |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30715 |
tggttaagagattatctatggttaaattcttcacaacttatcaatggatataacccttttggtatgaatagtttatca |
30792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 40 - 616
Target Start/End: Complemental strand, 37908862 - 37908285
Alignment:
| Q |
40 |
aatcttgatcgaacctatatttgccc-aatggatacaatctgctcatggtaaaacttcatatgggttcgatgtacttttatcttcaacgaatagtccggc |
138 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
37908862 |
aatcttgatcgaacctatatttgccccaatggatacaatctgctcatggtaaaacttcatatgggtacgatgtacttttatcttcaacgaatagtccggc |
37908763 |
T |
|
| Q |
139 |
gctcagtgcggggcgaagcatatggttgcctggttggttaaatgctattaatgagaatagtaattctctattcttaacaataggccctggagacttcttg |
238 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37908762 |
gctcagtgcggggcgaagcatatggtttcctggttggttaaatgctattaatgagaatagtaattctctattcttaacaataggccctggagacttcttg |
37908663 |
T |
|
| Q |
239 |
gttcatcatgctattgctcttggtttacatacaactacattgatcttagtaaaaggtgctttggatgcacgcggttccaagttaatgccggataaaaagg |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37908662 |
gttcatcatgctattgctcttggtttacatacaactacattgatcttagtaaaaggtgctctggatgcacgcggttccaagttaatgccggataaaaagg |
37908563 |
T |
|
| Q |
339 |
attttggttatagttttccttgcgatggtccgggacgaggtggtacttgtgatatttcggcttgggacgcattttatttggcagttttctggatgttaaa |
438 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
37908562 |
attttggttatagttttccttgcgatggtccgagacgaggtggtacttgtgatatttcggcttgggacgcattttatttggcaattttctggatgttaaa |
37908463 |
T |
|
| Q |
439 |
taccattggatgggttactttttattggcattggaagcacattacattatggcagggtaatgtttcacaatttaatgaatcttctacctatttgatggga |
538 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37908462 |
taccattggatgggttactttttattggcattggaagcacattacattatggcagggtaatgtttcacaatttaatgaatcttctacctatttgatggga |
37908363 |
T |
|
| Q |
539 |
tggttaagagattatctatggttaaattcttcacaacttatcaatggatataacccttttggtatgaatagtttatca |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37908362 |
tggttaagagattatctatggttaaattcttcacaacttatcaatggatataacccttttggtatgaatagtttatca |
37908285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 8 - 665
Target Start/End: Complemental strand, 237947 - 237290
Alignment:
| Q |
8 |
gtcatgcttgcttttgggactccggagaaacaaatcttgatcgaacctatatttgcccaatggatacaatctgctcatggtaaaacttcatatgggttcg |
107 |
Q |
| |
|
||||||||||||||||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||| |
|
|
| T |
237947 |
gtcatgcttgcttttggtactccagaaaagcaaatcttgatcgaacctatatttgcccaatggatacaatctgctcatggcaagacgacatatgggttcg |
237848 |
T |
|
| Q |
108 |
atgtacttttatcttcaacgaatagtccggcgctcagtgcggggcgaagcatatggttgcctggttggttaaatgctattaatgagaatagtaattctct |
207 |
Q |
| |
|
|| |||| ||||||||||||||| | || || ||| |||||| |||||| |||||||||| || ||||| |||||| ||||||||||||||||||| || |
|
|
| T |
237847 |
atatactcttatcttcaacgaatggccccgctttcaatgcgggtcgaagcctatggttgcccggatggttgaatgctgttaatgagaatagtaattcgct |
237748 |
T |
|
| Q |
208 |
attcttaacaataggccctggagacttcttggttcatcatgctattgctcttggtttacatacaactacattgatcttagtaaaaggtgctttggatgca |
307 |
Q |
| |
|
|||||||||||||| ||||| || |||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||| || ||||| || ||| |
|
|
| T |
237747 |
tttcttaacaataggacctggggatttcttggttcatcatgctattgctctaggtttgcatacaactacattgattttagtaaagggcgctttagacgca |
237648 |
T |
|
| Q |
308 |
cgcggttccaagttaatgccggataaaaaggattttggttatagttttccttgcgatggtccgggacgaggtggtacttgtgatatttcggcttgggacg |
407 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||||||||||||| || || || || || || ||||||||||||||||| |||||||||| |
|
|
| T |
237647 |
cgcggttccaaattaatgccggataaaaaggattttgggtatagttttccttgtgacggcccagggcgcggcggtacttgtgatatttctgcttgggacg |
237548 |
T |
|
| Q |
408 |
cattttatttggcagttttctggatgttaaataccattggatgggttactttttattggcattggaagcacattacattatggcagggtaatgtttcaca |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || || |||||||||||||| || |||||||| |
|
|
| T |
237547 |
cattttatttggcagttttctggatgttaaataccattgggtgggttactttttattggcattggaaacatatcacattatggcagggcaacgtttcaca |
237448 |
T |
|
| Q |
508 |
atttaatgaatcttctacctatttgatgggatggttaagagattatctatggttaaattcttcacaacttatcaatggatataacccttttggtatgaat |
607 |
Q |
| |
|
|||||||||||| || || |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
237447 |
atttaatgaatcctccacttatttgatgggatggttaagagattacctatggttaaactcttcacaacttatcaatggatataatccttttgggatgaat |
237348 |
T |
|
| Q |
608 |
agtttatcagtctgggcgtggatgttcttatttggacatcttgtttgggctactggat |
665 |
Q |
| |
|
|||||||| || ||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
237347 |
agtttatcggtatgggcttggatgttcttatttggacatcttgtttgggctactggat |
237290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 400 - 665
Target Start/End: Complemental strand, 43025981 - 43025716
Alignment:
| Q |
400 |
ttgggacgcattttatttggcagttttctggatgttaaataccattggatgggttactttttattggcattggaagcacattacattatggcagggtaat |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43025981 |
ttgggacgcattttatttggcagttttctggatgttaaataccattggatgagttactttttattggcattggaagcacattacattatggcagggtaat |
43025882 |
T |
|
| Q |
500 |
gtttcacaatttaatgaatcttctacctatttgatgggatggttaagagattatctatggttaaattcttcacaacttatcaatggatataacccttttg |
599 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43025881 |
gtttcacaatttaatgaatcttctacctatttgatgggatggttaagagattatctatggttaaattcttcacaacttatcaatggatataacccttttg |
43025782 |
T |
|
| Q |
600 |
gtatgaatagtttatcagtctgggcgtggatgttcttatttggacatcttgtttgggctactggat |
665 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43025781 |
gtatgaatagtttatcagtctgggcgtggatgttcttatttggacatcttgtttgggctactggat |
43025716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 140; Significance: 6e-73; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 219 - 366
Target Start/End: Original strand, 18045181 - 18045328
Alignment:
| Q |
219 |
taggccctggagacttcttggttcatcatgctattgctcttggtttacatacaactacattgatcttagtaaaaggtgctttggatgcacgcggttccaa |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
18045181 |
taggccctggagacttcttggttcatcatgctattgctcttggtttacatacaactacattgatcttagtaaaaggtgctttggatgcatgcggttccaa |
18045280 |
T |
|
| Q |
319 |
gttaatgccggataaaaaggattttggttatagttttccttgcgatgg |
366 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18045281 |
gttaatgtcggataaaaaggattttggttatagttttccttgcgatgg |
18045328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 307 - 441
Target Start/End: Complemental strand, 35070232 - 35070099
Alignment:
| Q |
307 |
acgcggttccaagttaatgccggataaaaaggattttggttatagttttccttgcgatggtccgggacgaggtggtacttgtgatatttcggcttgggac |
406 |
Q |
| |
|
|||| |||||||||||||| ||||||| |||||||| ||||||||||| ||||||| || || | |||||||||||||||||||||||||||||||| |
|
|
| T |
35070232 |
acgcagttccaagttaatggttgataaaatggattttgattatagttttctttgcgatagtttgg-atgaggtggtacttgtgatatttcggcttgggac |
35070134 |
T |
|
| Q |
407 |
gcattttatttggcagttttctggatgttaaatac |
441 |
Q |
| |
|
|| ||||||||||||| || |||||||||||||| |
|
|
| T |
35070133 |
acaatttatttggcagtcttttggatgttaaatac |
35070099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 307 - 441
Target Start/End: Complemental strand, 35096278 - 35096145
Alignment:
| Q |
307 |
acgcggttccaagttaatgccggataaaaaggattttggttatagttttccttgcgatggtccgggacgaggtggtacttgtgatatttcggcttgggac |
406 |
Q |
| |
|
|||| |||||||| ||||| ||||||| |||||||||||||||||||| ||| ||| || || | |||||||||||||||||||||||||||||||| |
|
|
| T |
35096278 |
acgcagttccaagctaatggttgataaaatggattttggttatagttttctttgagatagtttgg-atgaggtggtacttgtgatatttcggcttgggac |
35096180 |
T |
|
| Q |
407 |
gcattttatttggcagttttctggatgttaaatac |
441 |
Q |
| |
|
|| ||||||||||||| || |||||||||||||| |
|
|
| T |
35096179 |
acaatttatttggcagtcttttggatgttaaatac |
35096145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 379 - 425
Target Start/End: Original strand, 48364288 - 48364334
Alignment:
| Q |
379 |
tggtacttgtgatatttcggcttgggacgcattttatttggcagttt |
425 |
Q |
| |
|
|||||||| ||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
48364288 |
tggtacttatgatatttcggtttgggatgcattttatttggcagttt |
48364334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 4e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 262 - 427
Target Start/End: Original strand, 7243484 - 7243649
Alignment:
| Q |
262 |
tttacatacaactacattgatcttagtaaaaggtgctttggatgcacgcggttccaagttaatgccggataaaaaggattttggttatagttttccttgc |
361 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||||||||| | |||||||||||||||||||||||||| || || ||||| |||| ||||| |
|
|
| T |
7243484 |
tttacatacaactacattgatattagtaaacggtgctttggatgcacacagttccaagttaatgccggataaaaagatttatgattataatttttcttgc |
7243583 |
T |
|
| Q |
362 |
gatggtccgggacgaggtggtacttgtgatatttcggcttgggacgcattttatttggcagttttc |
427 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
7243584 |
gatggtccgagacaaggtggtacttgtgatatttcggcttgggatgcattttatttggtagttttc |
7243649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 4e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 150 - 239
Target Start/End: Original strand, 29443212 - 29443301
Alignment:
| Q |
150 |
ggcgaagcatatggttgcctggttggttaaatgctattaatgagaatagtaattctctattcttaacaataggccctggagacttcttgg |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29443212 |
ggcgaagcatatggttgcctggttggttaaatgctattaatgagaatagtaattctctattcttaacaataggccctggagacttcttgg |
29443301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 5e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 38363089 - 38363017
Alignment:
| Q |
269 |
acaactacattgatcttagtaaaaggtgctttggatgcacgcggttccaagttaatgccggataaaaaggatt |
341 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||| |||| |||||||||||| ||||||||||||||||| |
|
|
| T |
38363089 |
acaagtacattgatcttagtaaaatgtgctttggatgtacgcagttccaagttaacgccggataaaaaggatt |
38363017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 32 - 90
Target Start/End: Complemental strand, 41602085 - 41602027
Alignment:
| Q |
32 |
gagaaacaaatcttgatcgaacctatatttgcccaatggatacaatctgctcatggtaa |
90 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||||||| |||| ||||||| |
|
|
| T |
41602085 |
gagaaacaaatcttgatcgatcctatatttgtccaatggatacaatatgcttatggtaa |
41602027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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