View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6441_high_14 (Length: 237)

Name: NF6441_high_14
Description: NF6441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6441_high_14
NF6441_high_14
[»] chr7 (12 HSPs)
chr7 (1-237)||(23882967-23883203)
chr7 (28-228)||(5206143-5206343)
chr7 (28-228)||(27437397-27437597)
chr7 (28-237)||(27973229-27973438)
chr7 (28-231)||(566125-566328)
chr7 (116-234)||(3428069-3428187)
chr7 (28-228)||(29025590-29025790)
chr7 (110-234)||(8814208-8814332)
chr7 (110-234)||(42634647-42634771)
chr7 (142-183)||(38413157-38413198)
chr7 (142-173)||(4944910-4944941)
chr7 (144-209)||(1957797-1957862)
[»] chr4 (6 HSPs)
chr4 (1-237)||(18040128-18040364)
chr4 (1-237)||(22707818-22708054)
chr4 (28-231)||(26217146-26217349)
chr4 (142-231)||(20556923-20557012)
chr4 (153-231)||(8660499-8660577)
chr4 (142-198)||(12509613-12509669)
[»] chr3 (16 HSPs)
chr3 (1-237)||(8808184-8808420)
chr3 (1-237)||(21611614-21611850)
chr3 (28-228)||(10719252-10719452)
chr3 (28-231)||(15681605-15681808)
chr3 (28-237)||(25266909-25267118)
chr3 (116-234)||(3680272-3680390)
chr3 (116-234)||(30016842-30016960)
chr3 (110-234)||(6198171-6198295)
chr3 (110-234)||(8620212-8620336)
chr3 (110-234)||(15533501-15533625)
chr3 (3-228)||(3241947-3242171)
chr3 (110-234)||(46396875-46396999)
chr3 (142-231)||(12476520-12476609)
chr3 (83-198)||(41001765-41001880)
chr3 (83-198)||(41010547-41010662)
chr3 (146-198)||(27884087-27884139)
[»] chr6 (14 HSPs)
chr6 (1-237)||(16821181-16821417)
chr6 (1-237)||(27513814-27514050)
chr6 (28-231)||(16637593-16637796)
chr6 (28-228)||(335501-335701)
chr6 (28-228)||(27055320-27055520)
chr6 (110-234)||(619532-619656)
chr6 (110-234)||(24147075-24147199)
chr6 (110-234)||(20044261-20044384)
chr6 (152-234)||(20456412-20456494)
chr6 (142-231)||(18912118-18912207)
chr6 (83-198)||(5007596-5007711)
chr6 (83-183)||(5989891-5989991)
chr6 (142-173)||(28306866-28306897)
chr6 (142-173)||(28355672-28355703)
[»] chr5 (16 HSPs)
chr5 (1-237)||(12391605-12391841)
chr5 (28-228)||(23639529-23639729)
chr5 (28-228)||(23833158-23833358)
chr5 (28-231)||(21992795-21992998)
chr5 (116-234)||(37581400-37581518)
chr5 (68-231)||(27230585-27230748)
chr5 (28-231)||(12177532-12177735)
chr5 (28-231)||(26086301-26086504)
chr5 (28-231)||(33841877-33842080)
chr5 (35-231)||(11810378-11810574)
chr5 (110-234)||(1801890-1802014)
chr5 (110-234)||(7258323-7258447)
chr5 (110-234)||(7790586-7790710)
chr5 (28-197)||(21864429-21864598)
chr5 (83-198)||(24961778-24961893)
chr5 (143-192)||(20380525-20380574)
[»] chr1 (6 HSPs)
chr1 (1-237)||(6201142-6201378)
chr1 (28-231)||(31555482-31555685)
chr1 (152-219)||(19371816-19371883)
chr1 (83-198)||(31543425-31543540)
chr1 (142-183)||(13467253-13467294)
chr1 (142-183)||(13472247-13472288)
[»] scaffold0004 (1 HSPs)
scaffold0004 (2-234)||(191676-191908)
[»] scaffold0551 (1 HSPs)
scaffold0551 (1-222)||(9549-9770)
[»] chr2 (10 HSPs)
chr2 (28-228)||(16276885-16277085)
chr2 (28-228)||(21856543-21856743)
chr2 (28-237)||(3762981-3763190)
chr2 (35-183)||(21116447-21116596)
chr2 (83-198)||(35142089-35142204)
chr2 (143-192)||(30689904-30689953)
chr2 (83-183)||(24288600-24288700)
chr2 (83-198)||(15949630-15949745)
chr2 (188-231)||(24702014-24702057)
chr2 (83-173)||(20614202-20614292)
[»] scaffold0389 (2 HSPs)
scaffold0389 (28-228)||(3156-3356)
scaffold0389 (151-184)||(2799-2832)
[»] chr8 (5 HSPs)
chr8 (110-234)||(21479567-21479691)
chr8 (144-222)||(24706466-24706544)
chr8 (142-231)||(32002753-32002842)
chr8 (154-231)||(20736703-20736780)
chr8 (154-231)||(20745261-20745338)
[»] scaffold1197 (1 HSPs)
scaffold1197 (1-66)||(2393-2458)
[»] scaffold0202 (1 HSPs)
scaffold0202 (142-231)||(24761-24850)
[»] scaffold0357 (1 HSPs)
scaffold0357 (152-231)||(9342-9421)
[»] scaffold0132 (1 HSPs)
scaffold0132 (142-222)||(31876-31956)
[»] scaffold0044 (2 HSPs)
scaffold0044 (143-198)||(71083-71138)
scaffold0044 (151-197)||(71468-71514)
[»] scaffold0001 (1 HSPs)
scaffold0001 (142-231)||(99449-99538)
[»] scaffold0157 (1 HSPs)
scaffold0157 (142-198)||(10808-10864)
[»] scaffold0016 (1 HSPs)
scaffold0016 (83-183)||(19124-19224)
[»] scaffold0600 (1 HSPs)
scaffold0600 (154-221)||(8992-9059)
[»] scaffold0009 (1 HSPs)
scaffold0009 (142-197)||(152731-152786)
[»] scaffold0605 (1 HSPs)
scaffold0605 (142-180)||(5266-5304)
[»] scaffold0114 (1 HSPs)
scaffold0114 (161-231)||(31053-31123)
[»] scaffold0005 (1 HSPs)
scaffold0005 (152-197)||(301987-302032)


Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 23883203 - 23882967
Alignment:
Q  1 tcatcaggctcagaaaacaccgcagtatgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagacca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23883203 tcatcaggctcagaaaacaccgcagtatgatccgattcctatgaaatatgcggagctgcttccttcattgcttgaaagaaaccttgtccagaccagacca 23883104  T
Q  101 cccccgccgatacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttct 200  Q
    || |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23883103 cctccgccgatacctaagaaattaccggctaggtggagacctgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttct 23883004  T
Q  201 ccttgaagattgaagtccagaaactgattgacgatga 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  23883003 ccttgaagattgaagtccagaaactgattgacgatga 23882967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 28 - 228
Target Start/End: Complemental strand, 5206343 - 5206143
Alignment:
Q  28 tgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacccccgccgatacctaagaaattgccg 127  Q
    |||||||||||| |||||||||| |||| || |||| |  |||||||| || |||||||||||||| || ||||| || || ||||| ||||||||||||    
T  5206343 tgatccgattccaatgaaatatggggagttgtttccctatttgcttgagaggaaccttgtccagactaggccacctcctccaataccgaagaaattgccg 5206244  T
Q  128 gctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactga 227  Q
    ||| | ||||||| ||| ||||||||||  |||||||||||||||||||||||||| |||||||  ||||| || || ||||||||||||||||||||||    
T  5206243 gctcgatggagacctgatctcttttgtgttttccatcaaggggcacaaggtcatgatgttgagcgctgtttttctttaaagattgaagtccagaaactga 5206144  T
Q  228 t 228  Q
    |    
T  5206143 t 5206143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 28 - 228
Target Start/End: Original strand, 27437397 - 27437597
Alignment:
Q  28 tgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacccccgccgatacctaagaaattgccg 127  Q
    |||||||||||| |||||||||| |||| || |||| |  |||||||| || |||||||||||||| || ||||| || || ||||| ||||||||||||    
T  27437397 tgatccgattccaatgaaatatggggagttgtttccctatttgcttgagaggaaccttgtccagactaggccacctcctccaataccgaagaaattgccg 27437496  T
Q  128 gctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactga 227  Q
    ||| | ||||||| ||| ||||||||||  |||||||||||||||||||||||||| |||||||  ||||| || || ||||||||||||||||||||||    
T  27437497 gctcgatggagacctgatctcttttgtgttttccatcaaggggcacaaggtcatgatgttgagcgctgtttttctttaaagattgaagtccagaaactga 27437596  T
Q  228 t 228  Q
    |    
T  27437597 t 27437597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 28 - 237
Target Start/End: Complemental strand, 27973438 - 27973229
Alignment:
Q  28 tgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacccccgccgatacctaagaaattgccg 127  Q
    |||||| ||||| || ||||||||  || ||||||| |  |||||||| || ||||||||||| ||||| ||||| || |||||||| |||| |||||||    
T  27973438 tgatccaattccaattaaatatgcaaagttgcttccctatttgcttgagaggaaccttgtccaaaccaggccacctcctccgataccgaagatattgccg 27973339  T
Q  128 gctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactga 227  Q
    ||| | ||||||| ||| ||||||||||  |||||||||||||||||||||||||| |||||||  ||||| || ||||||||||  |||||||||||||    
T  27973338 gctcgatggagacctgatctcttttgtgttttccatcaaggggcacaaggtcatgatgttgagcgctgtttttctttgaagattgcggtccagaaactga 27973239  T
Q  228 ttgacgatga 237  Q
    |||| |||||    
T  27973238 ttgaagatga 27973229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 28 - 231
Target Start/End: Complemental strand, 566328 - 566125
Alignment:
Q  28 tgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacccccgccgatacctaagaaattgccg 127  Q
    |||||| ||||| || ||||||||  || ||||||| |  |||||||| || ||||||||||| ||||||||||| || |||||||| || | |||||||    
T  566328 tgatccaattccaattaaatatgcaaagttgcttccctatttgcttgagaggaaccttgtccaaaccagaccacctcctccgataccgaaaatattgccg 566229  T
Q  128 gctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactga 227  Q
    ||| | ||||||| ||| ||||||||||  |||||||||||||||||||||||||| || ||||  ||||| || ||||||||||  |||||||||||||    
T  566228 gctcgatggagacctgatctcttttgtgttttccatcaaggggcacaaggtcatgatgtcgagcgctgtttttctttgaagattgcggtccagaaactga 566129  T
Q  228 ttga 231  Q
    ||||    
T  566128 ttga 566125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 116 - 234
Target Start/End: Complemental strand, 3428187 - 3428069
Alignment:
Q  116 aagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaag 215  Q
    |||||||||| ||||   ||||||| |||||||| |||||| ||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||    
T  3428187 aagaaattgctggctcaatggagacctgacctctgttgtgctttccatcaaggagcacaaagtcatgacattgagcattgtttctccttgaagattgaag 3428088  T
Q  216 tccagaaactgattgacga 234  Q
    ||||||| |||||||||||    
T  3428087 tccagaagctgattgacga 3428069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 28 - 228
Target Start/End: Original strand, 29025590 - 29025790
Alignment:
Q  28 tgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacccccgccgatacctaagaaattgccg 127  Q
    |||||||||||| |||||||||| |||| || |||| |  ||  |||| || |||||||||||||| || ||||| || || ||||| ||||||||||||    
T  29025590 tgatccgattccaatgaaatatggggagttgtttccctatttatttgagaggaaccttgtccagactaggccacctcctccaataccgaagaaattgccg 29025689  T
Q  128 gctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactga 227  Q
    ||| | ||||||| ||| ||||||||||  |||||||| ||||||||||||||||| ||||||   ||||| || || ||||||||||||||||| ||||    
T  29025690 gctcgatggagacctgatctcttttgtgttttccatcagggggcacaaggtcatgatgttgagtgctgtttttctttaaagattgaagtccagaagctga 29025789  T
Q  228 t 228  Q
    |    
T  29025790 t 29025790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 110 - 234
Target Start/End: Original strand, 8814208 - 8814332
Alignment:
Q  110 atacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaaga 209  Q
    ||||| |||||||||||| ||||||||||||  || |||| |||  ||||||||||||||||||||||||||||||||||||| |||||||||| | | |    
T  8814208 atacccaagaaattgccgactaggtggagacaagatctctcttgcaccttccatcaaggggcacaaggtcatgacgttgagcactgtttctcctaggaaa 8814307  T
Q  210 ttgaagtccagaaactgattgacga 234  Q
    ||||||||||||| ||||| |||||    
T  8814308 ttgaagtccagaagctgatcgacga 8814332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 42634771 - 42634647
Alignment:
Q  110 atacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaaga 209  Q
    ||||| |||||||||||| ||||||||||||  || |||| |||  ||||||||||||||||||||||||||||||||||||| |||||||||| | | |    
T  42634771 atacccaagaaattgccgactaggtggagacaggatctctcttgcaccttccatcaaggggcacaaggtcatgacgttgagcactgtttctcctaggaaa 42634672  T
Q  210 ttgaagtccagaaactgattgacga 234  Q
    ||||||||||||| ||||| |||||    
T  42634671 ttgaagtccagaagctgatcgacga 42634647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 183
Target Start/End: Original strand, 38413157 - 38413198
Alignment:
Q  142 tgacctcttttgtgccttccatcaaggggcacaaggtcatga 183  Q
    |||||||| ||||||||||||||||||||||| |||||||||    
T  38413157 tgacctctcttgtgccttccatcaaggggcaccaggtcatga 38413198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 173
Target Start/End: Complemental strand, 4944941 - 4944910
Alignment:
Q  142 tgacctcttttgtgccttccatcaaggggcac 173  Q
    ||||||||||||||||||||||||||||||||    
T  4944941 tgacctcttttgtgccttccatcaaggggcac 4944910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 1957797 - 1957862
Alignment:
Q  144 acctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaaga 209  Q
    |||||||||||||||||||||||||||||  | |||| ||  ||||||| ||||| || |||||||    
T  1957797 acctcttttgtgccttccatcaaggggcatcatgtcacgatattgagcactgtttttctttgaaga 1957862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 18040128 - 18040364
Alignment:
Q  1 tcatcaggctcagaaaacaccgcagtatgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagacca 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  18040128 tcatcaggctcagaaaacaccgcagtatgatctgattcctatgaaatatgcggagctgcttccttctttgcttgaaagaaaccttgtccagaccagacca 18040227  T
Q  101 cccccgccgatacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttct 200  Q
    || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18040228 cctccgccgatacctaagaaattgccggctaggtggagacctgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttct 18040327  T
Q  201 ccttgaagattgaagtccagaaactgattgacgatga 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  18040328 ccttgaagattgaagtccagaaactgattgacgatga 18040364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 22707818 - 22708054
Alignment:
Q  1 tcatcaggctcagaaaacaccgcagtatgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagacca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  22707818 tcatcaggctcagaaaacaccgcagtatgatccgattcctatgaaatatgcggagctgcttccttcattgcttgaaagaaaccttgtccagaccagacca 22707917  T
Q  101 cccccgccgatacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttct 200  Q
    || |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22707918 cctccgccgatacctaagaaattaccggctaggtggagacctgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttct 22708017  T
Q  201 ccttgaagattgaagtccagaaactgattgacgatga 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  22708018 ccttgaagattgaagtccagaaactgattgacgatga 22708054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 28 - 231
Target Start/End: Complemental strand, 26217349 - 26217146
Alignment:
Q  28 tgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacccccgccgatacctaagaaattgccg 127  Q
    |||||| ||||| || ||||||||  || ||||||| |  |||||||| || ||||||||||| | ||| ||||| || |||||||| |||| |||||||    
T  26217349 tgatccaattccaattaaatatgcaaagttgcttccctatttgcttgagaggaaccttgtccaaatcaggccacctcctccgataccgaagatattgccg 26217250  T
Q  128 gctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactga 227  Q
    ||| | ||||||| ||| ||||||||||  |||||||||||||||||| ||||||| |||||||  ||||| || ||||||||||  |||||||||||||    
T  26217249 gctcgatggagacctgatctcttttgtgttttccatcaaggggcacaatgtcatgatgttgagcgctgtttttctttgaagattgcggtccagaaactga 26217150  T
Q  228 ttga 231  Q
    ||||    
T  26217149 ttga 26217146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 231
Target Start/End: Original strand, 20556923 - 20557012
Alignment:
Q  142 tgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactgattga 231  Q
    ||||||||  ||||||||||||||||| || |  || ||| |||| ||||| |||||||| ||||||||||||||||||||  |||||||    
T  20556923 tgacctctcctgtgccttccatcaaggagctcccggccatcacgtcgagcactgtttctctttgaagattgaagtccagaagttgattga 20557012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 153 - 231
Target Start/End: Original strand, 8660499 - 8660577
Alignment:
Q  153 gtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactgattga 231  Q
    |||||||||||||||| || |   | |||||| | ||||| |||||||| |||||||||||||||||||| ||||||||    
T  8660499 gtgccttccatcaaggagctcccagccatgacatcgagcactgtttctctttgaagattgaagtccagaagctgattga 8660577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 12509669 - 12509613
Alignment:
Q  142 tgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgttt 198  Q
    |||||||| |||||| |||||||||||||||| ||||||||| | ||| ||||||||    
T  12509669 tgacctctcttgtgctttccatcaaggggcaccaggtcatgatgctgaacattgttt 12509613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 8808184 - 8808420
Alignment:
Q  1 tcatcaggctcagaaaacaccgcagtatgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagacca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8808184 tcatcaggctcagaaaacaccgcagtatgatccgattcctatgaaatatgcggagctgcttccttcattgcttgaaagaaaccttgtccagaccagacca 8808283  T
Q  101 cccccgccgatacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttct 200  Q
    || |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8808284 cctccgccgatacctaagaaattaccggctaggtggagacctgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttct 8808383  T
Q  201 ccttgaagattgaagtccagaaactgattgacgatga 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  8808384 ccttgaagattgaagtccagaaactgattgacgatga 8808420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 21611614 - 21611850
Alignment:
Q  1 tcatcaggctcagaaaacaccgcagtatgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagacca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  21611614 tcatcaggctcagaaaacaccgcagtatgatccgattcctatgaaatatgcggagctgcttccttcattgcttgaaagaaaccttgtccagaccagacca 21611713  T
Q  101 cccccgccgatacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttct 200  Q
    || |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21611714 cctccgccgatacctaagaaattaccggctaggtggagacctgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttct 21611813  T
Q  201 ccttgaagattgaagtccagaaactgattgacgatga 237  Q
    |||||||||||||||||||||||||| ||||||||||    
T  21611814 ccttgaagattgaagtccagaaactggttgacgatga 21611850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 28 - 228
Target Start/End: Complemental strand, 10719452 - 10719252
Alignment:
Q  28 tgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacccccgccgatacctaagaaattgccg 127  Q
    |||||||||||| |||||||||| | || || |||| |  |||||||| || |||||||||||||| || ||||| || || ||||| ||||||||||||    
T  10719452 tgatccgattccaatgaaatatgggtagttgtttccctatttgcttgagaggaaccttgtccagactaggccacctcctccaataccgaagaaattgccg 10719353  T
Q  128 gctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactga 227  Q
    ||| | ||||||| ||| ||||||||||  |||||||||||||||||||||||||| |||||||  ||||| || || ||||||||||||||||||||||    
T  10719352 gctcgatggagacctgatctcttttgtgttttccatcaaggggcacaaggtcatgatgttgagcgctgtttttctttaaagattgaagtccagaaactga 10719253  T
Q  228 t 228  Q
    |    
T  10719252 t 10719252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 28 - 231
Target Start/End: Complemental strand, 15681808 - 15681605
Alignment:
Q  28 tgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacccccgccgatacctaagaaattgccg 127  Q
    |||||||||||| || ||||||||  || ||| ||| |  |||||||| || ||||||||||| ||||| ||||| || |||||||| ||||||||||||    
T  15681808 tgatccgattccaattaaatatgcaaagttgcctccctatttgcttgagaggaaccttgtccaaaccaggccacctcctccgataccgaagaaattgccg 15681709  T
Q  128 gctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactga 227  Q
    ||| | ||||||| ||| ||||||||||  ||| |||||||||||||||||||||| |||||||  ||||| || ||||||||||  |||||||||||||    
T  15681708 gctcgatggagacctgatctcttttgtgttttctatcaaggggcacaaggtcatgatgttgagcgctgtttttctttgaagattgcggtccagaaactga 15681609  T
Q  228 ttga 231  Q
    ||||    
T  15681608 ttga 15681605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 28 - 237
Target Start/End: Original strand, 25266909 - 25267118
Alignment:
Q  28 tgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacccccgccgatacctaagaaattgccg 127  Q
    |||||| ||||| || ||||||||  || ||||||| |  |||||||| || ||||||||||| | ||| ||||| || |||||||| |||| |||||||    
T  25266909 tgatccaattccaattaaatatgcaaagttgcttccctatttgcttgagaggaaccttgtccaaatcaggccacctcctccgataccgaagatattgccg 25267008  T
Q  128 gctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactga 227  Q
    ||| | ||||||| ||| ||||||||||  |||||||||||||||||||||||||| |||||||  ||||| || ||||||||||  || ||||||||||    
T  25267009 gctcgatggagacctgatctcttttgtgttttccatcaaggggcacaaggtcatgatgttgagcgctgtttttctttgaagattgcggttcagaaactga 25267108  T
Q  228 ttgacgatga 237  Q
    |||| |||||    
T  25267109 ttgaagatga 25267118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 116 - 234
Target Start/End: Original strand, 3680272 - 3680390
Alignment:
Q  116 aagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaag 215  Q
    |||||||||| ||||   ||||||  |||||||| |||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  3680272 aagaaattgctggctcaatggagaactgacctctgttgtgctttccatcaaggagcacaaagtcatgacgttgagcattgtttctccttgaagattgaag 3680371  T
Q  216 tccagaaactgattgacga 234  Q
    ||||||| |||||||||||    
T  3680372 tccagaagctgattgacga 3680390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 116 - 234
Target Start/End: Original strand, 30016842 - 30016960
Alignment:
Q  116 aagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaag 215  Q
    |||||||||| ||||   ||||||| |||||||| |||||| ||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||    
T  30016842 aagaaattgctggctcaatggagacctgacctctgttgtgctttccatcaaggagcacaaagtcatgacattgagcattgtttctccttgaagattgaag 30016941  T
Q  216 tccagaaactgattgacga 234  Q
    ||||||| |||||||||||    
T  30016942 tccagaagctgattgacga 30016960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 110 - 234
Target Start/End: Original strand, 6198171 - 6198295
Alignment:
Q  110 atacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaaga 209  Q
    ||||| |||||||||||| ||||||||||||  || |||| |||  ||||||||||||||||||||||||||||||||||||| |||||||||| | | |    
T  6198171 atacccaagaaattgccgactaggtggagacaggatctctcttgcaccttccatcaaggggcacaaggtcatgacgttgagcactgtttctcctaggaaa 6198270  T
Q  210 ttgaagtccagaaactgattgacga 234  Q
    ||||||||||||| ||||| |||||    
T  6198271 ttgaagtccagaagctgatcgacga 6198295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 110 - 234
Target Start/End: Original strand, 8620212 - 8620336
Alignment:
Q  110 atacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaaga 209  Q
    ||||| |||||||||||| ||||||||||||  || |||| |||  ||||||||||||||||||||||||||||||||||||| |||||||||| | | |    
T  8620212 atacccaagaaattgccgactaggtggagacaggatctctcttgcaccttccatcaaggggcacaaggtcatgacgttgagcactgtttctcctaggaaa 8620311  T
Q  210 ttgaagtccagaaactgattgacga 234  Q
    ||||||||||||| ||||| |||||    
T  8620312 ttgaagtccagaagctgatcgacga 8620336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 15533625 - 15533501
Alignment:
Q  110 atacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaaga 209  Q
    ||||| |||||||||||| ||||||||||||  || |||| |||  ||||||||||||||||||||||||||||||||||||| |||||||||| | | |    
T  15533625 atacccaagaaattgccgactaggtggagacaggatctctcttgcaccttccatcaaggggcacaaggtcatgacgttgagcactgtttctcctaggaaa 15533526  T
Q  210 ttgaagtccagaaactgattgacga 234  Q
    ||||||||||||| ||||| |||||    
T  15533525 ttgaagtccagaagctgatcgacga 15533501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 228
Target Start/End: Complemental strand, 3242171 - 3241947
Alignment:
Q  3 atcaggctcagaaaacaccgcagtatgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacc 102  Q
    |||||||||||||| || | |||||||||  |||||||||||||||||| ||| ||||||| |  |||||||| |  ||||||||||||||||||| ||     
T  3242171 atcaggctcagaaagcatcacagtatgatttgattcctatgaaatatgcagagttgcttccctatttgcttgagaagaaccttgtccagaccagacaacg 3242072  T
Q  103 cccgccgatacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctcc 202  Q
     || ||| | ||||| |||||| | ||| ||| |||||  ||||||| || ||||||||||||||  |||| ||||||| |||||||||| || || |      
T  3242071 tcctccggtgcctaaaaaattgtcagctcggtagagacccgacctctcttatgccttccatcaagcagcaccaggtcattacgttgagcactgctt-ttt 3241973  T
Q  203 ttgaagattgaagtccagaaactgat 228  Q
    |||||||| ||||| |||||||||||    
T  3241972 ttgaagatcgaagttcagaaactgat 3241947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 46396999 - 46396875
Alignment:
Q  110 atacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaaga 209  Q
    ||||| |||||||||||| ||||||||||||  || |||| |||  ||||||||||||||||||||||||||||||||||||| |||||||||| | | |    
T  46396999 atacccaagaaattgccgactaggtggagacaggatctctcttgcaccttccatcaaggggcacaaggtcatgacgttgagcactgtttctcctaggaaa 46396900  T
Q  210 ttgaagtccagaaactgattgacga 234  Q
    ||||||| ||||| ||||| |||||    
T  46396899 ttgaagttcagaagctgatcgacga 46396875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 231
Target Start/End: Complemental strand, 12476609 - 12476520
Alignment:
Q  142 tgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactgattga 231  Q
    ||||||||  ||||||||||||| ||| ||||  |  |||||| |||||||||||||||| ||||||| |||||||||||| ||||||||    
T  12476609 tgacctctcctgtgccttccatcgaggagcacccgaccatgacattgagcattgtttctctttgaagactgaagtccagaagctgattga 12476520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 198
Target Start/End: Original strand, 41001765 - 41001880
Alignment:
Q  83 cttgtccagaccagaccacccccgccgatacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatg 182  Q
    |||||||||||||||||||| ||    || |||||||||||||| ||| |||  || |  ||||||| ||||| |||||||||||||||||  |||||||    
T  41001765 cttgtccagaccagaccacctccttgtatgcctaagaaattgccagctgggtataggcccgacctctcttgtgtcttccatcaaggggcacctggtcatg 41001864  T
Q  183 acgttgagcattgttt 198  Q
    |  |||||| ||||||    
T  41001865 atattgagcgttgttt 41001880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 198
Target Start/End: Original strand, 41010547 - 41010662
Alignment:
Q  83 cttgtccagaccagaccacccccgccgatacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatg 182  Q
    |||||||||||||||||||| ||    || |||||||||||||| ||| |||  || |  ||||||| ||||| |||||||||||||||||  |||||||    
T  41010547 cttgtccagaccagaccacctccttgtatgcctaagaaattgccagctgggtataggcccgacctctcttgtgtcttccatcaaggggcacctggtcatg 41010646  T
Q  183 acgttgagcattgttt 198  Q
    |  |||||| ||||||    
T  41010647 atattgagcgttgttt 41010662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 198
Target Start/End: Original strand, 27884087 - 27884139
Alignment:
Q  146 ctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgttt 198  Q
    |||| ||||||||||||||||||| ||| |||||||||  ||||||| |||||    
T  27884087 ctctattgtgccttccatcaagggacaccaggtcatgatattgagcactgttt 27884139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 16821417 - 16821181
Alignment:
Q  1 tcatcaggctcagaaaacaccgcagtatgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagacca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  16821417 tcatcaggctcagaaaacaccgcagtatgatccgattcctatgaaatatgcggagctgcttccttctttgcttgaaagaaaccttgtccagaccagacca 16821318  T
Q  101 cccccgccgatacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttct 200  Q
    || |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16821317 cctccgccgatacctaagaaattaccggctaggtggagacctgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttct 16821218  T
Q  201 ccttgaagattgaagtccagaaactgattgacgatga 237  Q
    ||||||||||||| |||||||||||||||||||||||    
T  16821217 ccttgaagattgaggtccagaaactgattgacgatga 16821181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 27513814 - 27514050
Alignment:
Q  1 tcatcaggctcagaaaacaccgcagtatgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagacca 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  27513814 tcatcaggctcagaaaacaccgcagtatgatctgattcctatgaaatatgcggagctgcttccttctttgcttgaaagaaaccttgtccagaccagacca 27513913  T
Q  101 cccccgccgatacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttct 200  Q
    || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27513914 cctccgccgatacctaagaaattgccggctaggtggagacctgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttct 27514013  T
Q  201 ccttgaagattgaagtccagaaactgattgacgatga 237  Q
    |||||||||||||||||||||||||||||||| ||||    
T  27514014 ccttgaagattgaagtccagaaactgattgacaatga 27514050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 28 - 231
Target Start/End: Original strand, 16637593 - 16637796
Alignment:
Q  28 tgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacccccgccgatacctaagaaattgccg 127  Q
    |||||| ||||| || ||||||||  || ||||||| |  |||||||| || ||||||||||| ||||| ||||| || |||||||| ||||||||||||    
T  16637593 tgatccaattccaattaaatatgcaaagttgcttccctatttgcttgagaggaaccttgtccaaaccaggccacctcctccgataccgaagaaattgccg 16637692  T
Q  128 gctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactga 227  Q
    ||| | ||||||| ||| ||||||||||  |||||||||||||||||||||||||| |||||||  ||||| || ||||||||||  |||||||||||||    
T  16637693 gctcgatggagacctgatctcttttgtgttttccatcaaggggcacaaggtcatgatgttgagcgctgtttttctttgaagattgcggtccagaaactga 16637792  T
Q  228 ttga 231  Q
    ||||    
T  16637793 ttga 16637796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 28 - 228
Target Start/End: Complemental strand, 335701 - 335501
Alignment:
Q  28 tgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacccccgccgatacctaagaaattgccg 127  Q
    |||||||||||| |||||||||| |||| || |||| |  |||||||| || | |||||||||||| || ||||| || || ||||| ||||||||||||    
T  335701 tgatccgattccaatgaaatatggggagttgtttccctatttgcttgagaggatccttgtccagactaggccacctcctccaataccgaagaaattgccg 335602  T
Q  128 gctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactga 227  Q
    ||| | ||||||| ||| ||||||||||  |||||||||||||||||||||||||| |||||||  ||||| || || ||||||||||||||||| ||||    
T  335601 gctcgatggagacctgatctcttttgtgttttccatcaaggggcacaaggtcatgatgttgagcgctgtttttctttaaagattgaagtccagaagctga 335502  T
Q  228 t 228  Q
    |    
T  335501 t 335501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 28 - 228
Target Start/End: Complemental strand, 27055520 - 27055320
Alignment:
Q  28 tgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacccccgccgatacctaagaaattgccg 127  Q
    |||||||||||| |||||||||| |||| || |||| |  |||||||| || |||||||||| ||| || ||||| || || ||||| ||||||||||||    
T  27055520 tgatccgattccaatgaaatatggggagttgtttccctatttgcttgagaggaaccttgtccggactaggccacctcctccaataccgaagaaattgccg 27055421  T
Q  128 gctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactga 227  Q
    ||| | ||||||| ||| ||||||||||  |||||||||||||||||||||||||| |||||||  ||||| || || |||||| |||||||||||||||    
T  27055420 gctcgatggagacctgatctcttttgtgttttccatcaaggggcacaaggtcatgatgttgagcgctgtttttctttaaagatttaagtccagaaactga 27055321  T
Q  228 t 228  Q
    |    
T  27055320 t 27055320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 619656 - 619532
Alignment:
Q  110 atacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaaga 209  Q
    ||||| |||||||||||| ||||||||||||  || |||| |||  ||||||||||||||||||||||||||||||||||||| |||||||||| | | |    
T  619656 atacccaagaaattgccgactaggtggagacaagatctctcttgcaccttccatcaaggggcacaaggtcatgacgttgagcactgtttctcctaggaaa 619557  T
Q  210 ttgaagtccagaaactgattgacga 234  Q
    ||||||||||||| ||||| |||||    
T  619556 ttgaagtccagaagctgatcgacga 619532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 24147199 - 24147075
Alignment:
Q  110 atacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaaga 209  Q
    ||||| |||||||||||| ||||||||||||  || |||| |||  ||||||||||||||||||||||||||||||||||||| |||||||||| | | |    
T  24147199 atacccaagaaattgccgactaggtggagacaggatctctcttgcaccttccatcaaggggcacaaggtcatgacgttgagcactgtttctcctaggaaa 24147100  T
Q  210 ttgaagtccagaaactgattgacga 234  Q
    ||||||||||||| ||||| |||||    
T  24147099 ttgaagtccagaagctgatcgacga 24147075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 20044384 - 20044261
Alignment:
Q  110 atacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaaga 209  Q
    ||||| |||||||||||| ||||||||||||  || |||| |||  ||||||||||||||||||||||||||||||||||||| |||||||||| | | |    
T  20044384 atacccaagaaattgccgactaggtggagacaggatctctcttgcaccttccatcaaggggcacaaggtcatgacgttgagca-tgtttctcctaggaaa 20044286  T
Q  210 ttgaagtccagaaactgattgacga 234  Q
    ||||||||||||| ||||| |||||    
T  20044285 ttgaagtccagaagctgatcgacga 20044261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 234
Target Start/End: Complemental strand, 20456494 - 20456412
Alignment:
Q  152 tgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactgattgacga 234  Q
    ||||||||||||||||| ||||  || |||||| | ||||| |||||||| ||||||||||||||||| || ||||| |||||    
T  20456494 tgtgccttccatcaaggagcacccggccatgacatcgagcactgtttctctttgaagattgaagtccaaaagctgatcgacga 20456412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 231
Target Start/End: Original strand, 18912118 - 18912207
Alignment:
Q  142 tgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactgattga 231  Q
    ||||||||  ||| ||||||||||||| |||| ||| |||||| | |||||  ||||||| ||||||| |||||||||||| ||||||||    
T  18912118 tgacctctcatgttccttccatcaaggagcaccaggccatgacatcgagcaccgtttctctttgaagactgaagtccagaagctgattga 18912207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 198
Target Start/End: Original strand, 5007596 - 5007711
Alignment:
Q  83 cttgtccagaccagaccacccccgccgatacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatg 182  Q
    |||||||||||||||||||| ||    || |||||||||||||| ||| |||  || |  ||||||| ||||| |||||||||||||||||  |||||||    
T  5007596 cttgtccagaccagaccacctccttgtatgcctaagaaattgccagctgggtataggcccgacctctcttgtgtcttccatcaaggggcacctggtcatg 5007695  T
Q  183 acgttgagcattgttt 198  Q
    |  |||||| ||||||    
T  5007696 atattgagcgttgttt 5007711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 183
Target Start/End: Original strand, 5989891 - 5989991
Alignment:
Q  83 cttgtccagaccagaccacccccgccgatacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatg 182  Q
    |||||||||||||||||||| ||    || |||||||||||||| ||| |||  || |  ||||||| ||||| |||||||||||||||||  |||||||    
T  5989891 cttgtccagaccagaccacctccttgtatgcctaagaaattgccagctgggtataggcccgacctctcttgtgtcttccatcaaggggcacctggtcatg 5989990  T
Q  183 a 183  Q
    |    
T  5989991 a 5989991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 173
Target Start/End: Original strand, 28306866 - 28306897
Alignment:
Q  142 tgacctcttttgtgccttccatcaaggggcac 173  Q
    ||||||||||||||||||||||||||||||||    
T  28306866 tgacctcttttgtgccttccatcaaggggcac 28306897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 173
Target Start/End: Original strand, 28355672 - 28355703
Alignment:
Q  142 tgacctcttttgtgccttccatcaaggggcac 173  Q
    ||||||||||||||||||||||||||||||||    
T  28355672 tgacctcttttgtgccttccatcaaggggcac 28355703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 12391841 - 12391605
Alignment:
Q  1 tcatcaggctcagaaaacaccgcagtatgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagacca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  12391841 tcatcaggctcagaaaacaccgcagtatgatccgattcctatgaaatatgcggagctgcttccttcattgcttgaaagaaaccttgtccagaccagacca 12391742  T
Q  101 cccccgccgatacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttct 200  Q
    || |||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12391741 cctccgccgatacctaagaaattaccgcctaggtggagacctgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttct 12391642  T
Q  201 ccttgaagattgaagtccagaaactgattgacgatga 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  12391641 ccttgaagattgaagtccagaaactgattgacgatga 12391605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 28 - 228
Target Start/End: Original strand, 23639529 - 23639729
Alignment:
Q  28 tgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacccccgccgatacctaagaaattgccg 127  Q
    |||||||||||| |||||||||| |||| || |||| |  |||||||| || |||||||||||||| || ||||| || || ||||| ||||||||||||    
T  23639529 tgatccgattccaatgaaatatggggagttgtttccctatttgcttgagaggaaccttgtccagactaggccacctcctccaataccgaagaaattgccg 23639628  T
Q  128 gctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactga 227  Q
    ||| | ||||||| ||| ||||||||||  |||||||||||||||||||||||||| |||||||  ||||| || || ||||||||||||||||||||||    
T  23639629 gctcgatggagacctgatctcttttgtgttttccatcaaggggcacaaggtcatgatgttgagcgctgtttttctttaaagattgaagtccagaaactga 23639728  T
Q  228 t 228  Q
    |    
T  23639729 t 23639729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 28 - 228
Target Start/End: Complemental strand, 23833358 - 23833158
Alignment:
Q  28 tgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacccccgccgatacctaagaaattgccg 127  Q
    |||||||||||| |||||||||| |||| || |||| |  |||||||| || |||||||||||||| || ||||| || || ||||| ||||||||||||    
T  23833358 tgatccgattccaatgaaatatggggagttgtttccctatttgcttgagaggaaccttgtccagactaggccacctcctccaataccgaagaaattgccg 23833259  T
Q  128 gctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactga 227  Q
    ||| | ||||||| ||| ||||||||||  |||||||||||||||||||||||||| |||||||  ||||| || || ||||||||||||||||||||||    
T  23833258 gctcgatggagacctgatctcttttgtgttttccatcaaggggcacaaggtcatgatgttgagcgctgtttttctttaaagattgaagtccagaaactga 23833159  T
Q  228 t 228  Q
    |    
T  23833158 t 23833158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 28 - 231
Target Start/End: Complemental strand, 21992998 - 21992795
Alignment:
Q  28 tgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacccccgccgatacctaagaaattgccg 127  Q
    |||||||||||| || ||||||||  || ||||||| |  |||||||| || ||||||||||| || || ||||| || |||||||| ||||||||||||    
T  21992998 tgatccgattccaattaaatatgcaaagttgcttccctatttgcttgagaggaaccttgtccaaactaggccacctcctccgataccgaagaaattgccg 21992899  T
Q  128 gctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactga 227  Q
    ||| | ||||||| ||| ||||||||||  |||||||||||||||||||||||||| |||||||  ||||| || ||||||||||  |||||||||||||    
T  21992898 gctcgatggagacctgatctcttttgtgttttccatcaaggggcacaaggtcatgatgttgagcgctgtttttctttgaagattggggtccagaaactga 21992799  T
Q  228 ttga 231  Q
    ||||    
T  21992798 ttga 21992795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 116 - 234
Target Start/End: Original strand, 37581400 - 37581518
Alignment:
Q  116 aagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaag 215  Q
    |||||||||||||||   ||||||| ||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  37581400 aagaaattgccggctcaatggagacctgacctcttttgtgctttccatcaaggagcacaaggtcatgacattgagcattgtttctccttgaagattgaag 37581499  T
Q  216 tccagaaactgattgacga 234  Q
    ||||||| |||||||||||    
T  37581500 tccagaagctgattgacga 37581518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 68 - 231
Target Start/End: Complemental strand, 27230748 - 27230585
Alignment:
Q  68 ttgcttgaaagaaaccttgtccagaccagaccacccccgccgatacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaag 167  Q
    |||||||| || ||||||||||| ||||| ||||| || |||||||| ||||||||||||||| | ||||||| ||| ||||||||||  ||||||||||    
T  27230748 ttgcttgagaggaaccttgtccaaaccaggccacctcctccgataccgaagaaattgccggctcgatggagacctgatctcttttgtgttttccatcaag 27230649  T
Q  168 gggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactgattga 231  Q
    |||||||||||||||| |||||||  ||||| || ||||||||||  |||||||||||||||||    
T  27230648 gggcacaaggtcatgatgttgagcgctgtttttctttgaagattgcggtccagaaactgattga 27230585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 28 - 231
Target Start/End: Complemental strand, 12177735 - 12177532
Alignment:
Q  28 tgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacccccgccgatacctaagaaattgccg 127  Q
    |||||| ||||| || ||||||||  || ||||||| |  |||||||| || ||||||||||| ||||||||||| || |||||||| || | |||||||    
T  12177735 tgatccaattccaattaaatatgcaaagttgcttccctatttgcttgagaggaaccttgtccaaaccagaccacctcctccgataccgaaaatattgccg 12177636  T
Q  128 gctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactga 227  Q
    ||| | ||||||| ||| ||||||||||  |||||||||||||||||||||||||| || ||||  ||||| || ||||||||||  |||||||||||||    
T  12177635 gctcgatggagacctgatctcttttgtgttttccatcaaggggcacaaggtcatgatgtcgagcgctgtttttctttgaagattgcggtccagaaactga 12177536  T
Q  228 ttga 231  Q
    ||||    
T  12177535 ttga 12177532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 28 - 231
Target Start/End: Complemental strand, 26086504 - 26086301
Alignment:
Q  28 tgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacccccgccgatacctaagaaattgccg 127  Q
    |||||| ||||| || ||||||||  || ||||||| |  |||||||| || ||||||||||| ||||||||||| || |||||||| || | |||||||    
T  26086504 tgatccaattccaattaaatatgcaaagttgcttccctatttgcttgagaggaaccttgtccaaaccagaccacctcctccgataccgaaaatattgccg 26086405  T
Q  128 gctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactga 227  Q
    ||| | ||||||| ||| ||||||||||  |||||||||||||||||||||||||| || ||||  ||||| || ||||||||||  |||||||||||||    
T  26086404 gctcgatggagacctgatctcttttgtgttttccatcaaggggcacaaggtcatgatgtcgagcgctgtttttctttgaagattgcggtccagaaactga 26086305  T
Q  228 ttga 231  Q
    ||||    
T  26086304 ttga 26086301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 28 - 231
Target Start/End: Complemental strand, 33842080 - 33841877
Alignment:
Q  28 tgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacccccgccgatacctaagaaattgccg 127  Q
    |||||| ||||| || ||||||||  || ||||||| |  |||||||| || ||||||||||| | ||| ||||| || |||||||| |||| |||||||    
T  33842080 tgatccaattccaattaaatatgcaaagttgcttccctatttgcttgagaggaaccttgtccaaatcaggccacctcctccgataccgaagatattgccg 33841981  T
Q  128 gctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactga 227  Q
    ||| | ||||||| ||| ||||||||||  |||||||||||||||||||||||||| |||||||  ||||| || ||||||||||  |||||||||||||    
T  33841980 gctcgatggagacctgatctcttttgtgttttccatcaaggggcacaaggtcatgatgttgagcgctgtttttctttgaagattgcggtccagaaactga 33841881  T
Q  228 ttga 231  Q
    ||||    
T  33841880 ttga 33841877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 35 - 231
Target Start/End: Complemental strand, 11810574 - 11810378
Alignment:
Q  35 attcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacccccgccgatacctaagaaattgccggctaggt 134  Q
    ||||| || ||||||||  || ||||||| |  |||||||| || ||||||||||| ||||| ||||| || |||||||| || | |||||||||| | |    
T  11810574 attccaattaaatatgcaaagttgcttccctatttgcttgagaggaaccttgtccaaaccaggccacctcctccgataccgaaaatattgccggctcgat 11810475  T
Q  135 ggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactgattga 231  Q
    |||||| ||| ||||||||||  |||||||||||||||||||||||||| || ||||  ||||| || ||||||||||  |||||||||||||||||    
T  11810474 ggagacctgatctcttttgtgttttccatcaaggggcacaaggtcatgatgtcgagcgctgtttttctttgaagattgcggtccagaaactgattga 11810378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 110 - 234
Target Start/End: Original strand, 1801890 - 1802014
Alignment:
Q  110 atacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaaga 209  Q
    ||||| |||||||||||| ||||||||||||  || |||| |||  ||||||||||||||||||||||||||||||||||||| |||||||||| | | |    
T  1801890 atacccaagaaattgccgactaggtggagacaggatctctcttgcaccttccatcaaggggcacaaggtcatgacgttgagcactgtttctcctaggaaa 1801989  T
Q  210 ttgaagtccagaaactgattgacga 234  Q
    ||||||||||||| ||||| |||||    
T  1801990 ttgaagtccagaagctgatcgacga 1802014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 7258447 - 7258323
Alignment:
Q  110 atacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaaga 209  Q
    ||||| |||||||||||| ||||||||||||  || |||| |||  ||||||||||||||||||||||||||||||||||||| |||||||||| | | |    
T  7258447 atacccaagaaattgccgactaggtggagacaggatctctcttgcaccttccatcaaggggcacaaggtcatgacgttgagcactgtttctcctaggaaa 7258348  T
Q  210 ttgaagtccagaaactgattgacga 234  Q
    ||||||||||||| ||||| |||||    
T  7258347 ttgaagtccagaagctgatcgacga 7258323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 110 - 234
Target Start/End: Original strand, 7790586 - 7790710
Alignment:
Q  110 atacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaaga 209  Q
    ||||| |||||||||||| ||||||||||||  || |||| |||  ||||||||||||||||||||||||||||||||||||| |||||||||| | | |    
T  7790586 atacccaagaaattgccgactaggtggagacaggatctctcttgcaccttccatcaaggggcacaaggtcatgacgttgagcactgtttctcctaggaaa 7790685  T
Q  210 ttgaagtccagaaactgattgacga 234  Q
    ||||||||||||| ||||| |||||    
T  7790686 ttgaagtccagaagctgatcgacga 7790710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 197
Target Start/End: Complemental strand, 21864598 - 21864429
Alignment:
Q  28 tgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacccccgccgatacctaagaaattgccg 127  Q
    |||||| ||||| |||||||||||||||||| |||||   |||||| | || ||||| ||||| || | |||||| || || || ||||||||||||||     
T  21864598 tgatccaattccaatgaaatatgcggagctgtttcctgatttgcttaagaggaacctcgtccaaactaaaccacctcctccaatgcctaagaaattgcct 21864499  T
Q  128 gctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtt 197  Q
    ||  |||  ||| | || ||||  |||| ||||||||||||||||| |||||||||| |||||| |||||    
T  21864498 gcacggtttagagtcgatctctcatgtgtcttccatcaaggggcactaggtcatgacattgagcgttgtt 21864429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 198
Target Start/End: Complemental strand, 24961893 - 24961778
Alignment:
Q  83 cttgtccagaccagaccacccccgccgatacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatg 182  Q
    |||||||||||||||||||| ||    || |||||||||||||| ||| |||  || |  ||||||| ||||| |||||||||||||||||  |||||||    
T  24961893 cttgtccagaccagaccacctccttgtatgcctaagaaattgccagctgggtataggcccgacctctcttgtgtcttccatcaaggggcacctggtcatg 24961794  T
Q  183 acgttgagcattgttt 198  Q
    |  |||||| ||||||    
T  24961793 atattgagcgttgttt 24961778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 192
Target Start/End: Original strand, 20380525 - 20380574
Alignment:
Q  143 gacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagca 192  Q
    |||||||||||||| |||||||||||||||| |||||||||  |||||||    
T  20380525 gacctcttttgtgctttccatcaaggggcaccaggtcatgatattgagca 20380574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 6201378 - 6201142
Alignment:
Q  1 tcatcaggctcagaaaacaccgcagtatgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagacca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6201378 tcatcaggctcagaaaacaccgcagtatgatccgattcctatgaaatatgcggagctgcttccttctttgcttgaaagaaaccttgtccagaccagacca 6201279  T
Q  101 cccccgccgatacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttct 200  Q
    || ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  6201278 cctccgccgatacctaagaaattgccggctaggtggagacctgacctcttttgtgtcttccatcaaggggcgcaaggtcatgacgttgagcattgtttct 6201179  T
Q  201 ccttgaagattgaagtccagaaactgattgacgatga 237  Q
    |||||||||||||| |||||||| |||||||||||||    
T  6201178 ccttgaagattgaaatccagaaattgattgacgatga 6201142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 28 - 231
Target Start/End: Original strand, 31555482 - 31555685
Alignment:
Q  28 tgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacccccgccgatacctaagaaattgccg 127  Q
    |||||||||||| |||||||||| |||| || |||| |  |||||||| || |||||||||||||| || ||||| || || ||||| ||||||||||||    
T  31555482 tgatccgattccaatgaaatatggggagttgtttccctatttgcttgagaggaaccttgtccagactaggccacctcctccaataccgaagaaattgccg 31555581  T
Q  128 gctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactga 227  Q
    ||| | ||||||| ||| ||||||||||  |||||||||||||||||||||||||| || ||||  ||||| || ||||||||||  |||||||||||||    
T  31555582 gctcgatggagacctgatctcttttgtgttttccatcaaggggcacaaggtcatgatgtcgagcgctgtttttctttgaagattgcggtccagaaactga 31555681  T
Q  228 ttga 231  Q
    ||||    
T  31555682 ttga 31555685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 219
Target Start/End: Original strand, 19371816 - 19371883
Alignment:
Q  152 tgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtcca 219  Q
    ||||||||||||||||| ||||  || |||||| | ||||| |||||||| |||||||||||||||||    
T  19371816 tgtgccttccatcaaggagcacccggccatgacatcgagcactgtttctctttgaagattgaagtcca 19371883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 198
Target Start/End: Original strand, 31543425 - 31543540
Alignment:
Q  83 cttgtccagaccagaccacccccgccgatacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatg 182  Q
    |||||||||||||||||||| ||    || |||||||||||||| ||| |||  || |  ||||||| ||||| |||||||||||||||||  |||||||    
T  31543425 cttgtccagaccagaccacctccttgtatgcctaagaaattgccagctgggtataggcccgacctctcttgtgtcttccatcaaggggcacctggtcatg 31543524  T
Q  183 acgttgagcattgttt 198  Q
    |  |||||| ||||||    
T  31543525 atattgagcgttgttt 31543540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 183
Target Start/End: Original strand, 13467253 - 13467294
Alignment:
Q  142 tgacctcttttgtgccttccatcaaggggcacaaggtcatga 183  Q
    |||||||| ||||||||||||||||||||||| |||||||||    
T  13467253 tgacctctcttgtgccttccatcaaggggcaccaggtcatga 13467294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 183
Target Start/End: Original strand, 13472247 - 13472288
Alignment:
Q  142 tgacctcttttgtgccttccatcaaggggcacaaggtcatga 183  Q
    |||||||| || |||||||||||||||||||| |||||||||    
T  13472247 tgacctctcttatgccttccatcaaggggcaccaggtcatga 13472288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 2 - 234
Target Start/End: Complemental strand, 191908 - 191676
Alignment:
Q  2 catcaggctcagaaaacaccgcagtatgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccac 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| || ||||||||||||||||||||||    
T  191908 catcaggctcagaaaacaccgcagtatgatccgattcctatgaaatatgcggagctgcttcctactttgcttgagaggaaccttgtccagaccagaccac 191809  T
Q  102 ccccgccgatacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctc 201  Q
    | ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||    
T  191808 ctccgccgatacctaagaaattgccggctaggtggagacctgacctcttttgtaccttccatcgaggggcacaaggtcatgacgttgagcactgtttctc 191709  T
Q  202 cttgaagattgaagtccagaaactgattgacga 234  Q
    ||||||||||||||||||||| ||||| |||||    
T  191708 cttgaagattgaagtccagaagctgatcgacga 191676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0551 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: scaffold0551
Description:

Target: scaffold0551; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 9770 - 9549
Alignment:
Q  1 tcatcaggctcagaaaacaccgcagtatgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagacca 100  Q
    ||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||    
T  9770 tcatcaggctcagaaaacaccacaatatgatctgattcctatgaaatatgcggagctgcttccttctttgcttgagaggaaccttgtccagaccagacca 9671  T
Q  101 cccccgccgatacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttct 200  Q
    || ||||||||||||||||||||||||||||||||||||| |||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  9670 cctccgccgatacctaagaaattgccggctaggtggagacctgacctctattgtacctttcatcaaggggcacaaggtcatgacgttgagcattgtttct 9571  T
Q  201 ccttgaagattgaagtccagaa 222  Q
    ||||||||||||||||||||||    
T  9570 ccttgaagattgaagtccagaa 9549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 28 - 228
Target Start/End: Original strand, 16276885 - 16277085
Alignment:
Q  28 tgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacccccgccgatacctaagaaattgccg 127  Q
    |||||||||||| |||||||||| |||| || |||| |  |||||||| || |||||||||||||| || ||||| || || ||||| ||||||||||||    
T  16276885 tgatccgattccaatgaaatatggggagttgtttccctatttgcttgagaggaaccttgtccagactaggccacctcctccaataccgaagaaattgccg 16276984  T
Q  128 gctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactga 227  Q
    ||| | ||||||| ||| ||||||||||  |||||||||||||||||||||||||| |||||||  ||||| || || ||||||||||||||||||||||    
T  16276985 gctcgatggagacctgatctcttttgtgttttccatcaaggggcacaaggtcatgatgttgagcgctgtttttctttaaagattgaagtccagaaactga 16277084  T
Q  228 t 228  Q
    |    
T  16277085 t 16277085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 28 - 228
Target Start/End: Complemental strand, 21856743 - 21856543
Alignment:
Q  28 tgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacccccgccgatacctaagaaattgccg 127  Q
    |||||||||||| || ||||||||  || ||||||| |  |||||||| || ||||||||||| || || ||||| || |||||||| ||||||||||||    
T  21856743 tgatccgattccaattaaatatgcaaagttgcttccctatttgcttgagaggaaccttgtccaaactaggccacctcctccgataccgaagaaattgccg 21856644  T
Q  128 gctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactga 227  Q
    ||| | ||||||| ||| ||||||||||  |||||||||||||||||||||||||| |||||||  ||||| || ||||||||||  |||||||||||||    
T  21856643 gctcgatggagacctgatctcttttgtgttttccatcaaggggcacaaggtcatgatgttgagcgctgtttttctttgaagattggggtccagaaactga 21856544  T
Q  228 t 228  Q
    |    
T  21856543 t 21856543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 28 - 237
Target Start/End: Complemental strand, 3763190 - 3762981
Alignment:
Q  28 tgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacccccgccgatacctaagaaattgccg 127  Q
    |||||| ||||| || ||||||||  || ||||||| |  |||||||| || ||||||||||| | ||| ||||| || |||||||| |||| |||||||    
T  3763190 tgatccaattccaattaaatatgcaaagttgcttccctatttgcttgagaggaaccttgtccaaatcaggccacctcctccgataccgaagatattgccg 3763091  T
Q  128 gctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactga 227  Q
    ||| | ||||||| ||| ||||||||||  |||||||||||||||||||||||||| |||||||  ||||| || ||||||||||  |||||||||||||    
T  3763090 gctcgatggagacctgatctcttttgtgttttccatcaaggggcacaaggtcatgatgttgagcgctgtttttctttgaagattgcggtccagaaactga 3762991  T
Q  228 ttgacgatga 237  Q
    |||| |||||    
T  3762990 ttgaagatga 3762981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 183
Target Start/End: Original strand, 21116447 - 21116596
Alignment:
Q  35 attcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacccccgccgatacctaagaaatt-gccggctagg 133  Q
    ||||| || |||||||| |||||||||||    |||||| | |  |||||||||||||||||||||||    | | ||||||||||||| ||| ||| ||    
T  21116447 attcccataaaatatgcagagctgcttcccggtttgcttaagaagaaccttgtccagaccagaccaccttatcgggtacctaagaaatttgccagctggg 21116546  T
Q  134 tggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatga 183  Q
    |  || |  ||||||||||||||||||||||||||||||| || ||||||    
T  21116547 tataggcccgacctcttttgtgccttccatcaaggggcaccagatcatga 21116596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 198
Target Start/End: Original strand, 35142089 - 35142204
Alignment:
Q  83 cttgtccagaccagaccacccccgccgatacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatg 182  Q
    |||||||||||||||||||| ||    || |||||||||||||| ||| |||  || |  ||||||| ||||| |||||||||||||||||  |||||||    
T  35142089 cttgtccagaccagaccacctccttgtatgcctaagaaattgccagctgggtataggcccgacctctcttgtgtcttccatcaaggggcacctggtcatg 35142188  T
Q  183 acgttgagcattgttt 198  Q
    |  |||||| ||||||    
T  35142189 atattgagcgttgttt 35142204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 192
Target Start/End: Complemental strand, 30689953 - 30689904
Alignment:
Q  143 gacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagca 192  Q
    |||||||||||||| |||||||||||||||| |||||||||  |||||||    
T  30689953 gacctcttttgtgctttccatcaaggggcaccaggtcatgatattgagca 30689904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 183
Target Start/End: Original strand, 24288600 - 24288700
Alignment:
Q  83 cttgtccagaccagaccacccccgccgatacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatg 182  Q
    |||||||||||||||||||  || |  || |||||||||||||| ||| |||  || |  ||||||| ||||| |||||||||||||||||  |||||||    
T  24288600 cttgtccagaccagaccacttcctcgtatgcctaagaaattgccagctgggtataggcccgacctctcttgtgtcttccatcaaggggcacctggtcatg 24288699  T
Q  183 a 183  Q
    |    
T  24288700 a 24288700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 198
Target Start/End: Complemental strand, 15949745 - 15949630
Alignment:
Q  83 cttgtccagaccagaccacccccgccgatacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatg 182  Q
    ||||||||||| |||||||| ||    || |||||||||||||| ||| |||  || |  ||||||| ||||| |||||||||||||||||  |||||||    
T  15949745 cttgtccagacaagaccacctccttgtatgcctaagaaattgccagctgggtataggcccgacctctcttgtgtcttccatcaaggggcacctggtcatg 15949646  T
Q  183 acgttgagcattgttt 198  Q
    |  |||||| ||||||    
T  15949645 atattgagcgttgttt 15949630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 231
Target Start/End: Original strand, 24702014 - 24702057
Alignment:
Q  188 gagcattgtttctccttgaagattgaagtccagaaactgattga 231  Q
    ||||| |||||||| |||||||||||||||||||| ||||||||    
T  24702014 gagcactgtttctctttgaagattgaagtccagaagctgattga 24702057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 173
Target Start/End: Original strand, 20614202 - 20614292
Alignment:
Q  83 cttgtccagaccagaccacccccgccgatacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcac 173  Q
    |||||||||||||||||||| ||    || |||||||||||||| ||| |||  || |  ||||||| ||||| |||||||||||||||||    
T  20614202 cttgtccagaccagaccacctccttgtatgcctaagaaattgccagctgggtataggcccgacctctattgtgtcttccatcaaggggcac 20614292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0389 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: scaffold0389
Description:

Target: scaffold0389; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 28 - 228
Target Start/End: Original strand, 3156 - 3356
Alignment:
Q  28 tgatccgattcctatgaaatatgcggagctgcttccttcgttgcttgaaagaaaccttgtccagaccagaccacccccgccgatacctaagaaattgccg 127  Q
    |||||| ||||| |||||||||||  |||||||||| |  || ||||| || ||||||||||| || || ||||| || |||||||  ||||||||||||    
T  3156 tgatccaattccaatgaaatatgcaaagctgcttccctattttcttgagaggaaccttgtccaaactaggccacctcctccgatacaaaagaaattgccg 3255  T
Q  128 gctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactga 227  Q
    ||| | ||||||| ||| ||||||||||  |||||||||||||||||||||||||| |||||||  ||||| || ||||||||||| ||||| || ||||    
T  3256 gctcgatggagacctgatctcttttgtgttttccatcaaggggcacaaggtcatgatgttgagcgctgtttttctttgaagattgaggtccaaaagctga 3355  T
Q  228 t 228  Q
    |    
T  3356 t 3356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0389; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 184
Target Start/End: Original strand, 2799 - 2832
Alignment:
Q  151 ttgtgccttccatcaaggggcacaaggtcatgac 184  Q
    ||||||||||||||||||||||| ||||||||||    
T  2799 ttgtgccttccatcaaggggcaccaggtcatgac 2832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 21479691 - 21479567
Alignment:
Q  110 atacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaaga 209  Q
    ||||| |||||||||||| ||||||||||||  || |||| |||  ||||||||||||||||||||||||||||||||||||| |||||||||| | | |    
T  21479691 atacccaagaaattgccgactaggtggagacaggatctctcttgcaccttccatcaaggggcacaaggtcatgacgttgagcactgtttctcctaggaaa 21479592  T
Q  210 ttgaagtccagaaactgattgacga 234  Q
    ||||||||||||| ||||| |||||    
T  21479591 ttgaagtccagaagctgatcgacga 21479567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 24706544 - 24706466
Alignment:
Q  144 acctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaa 222  Q
    |||||| ||||||||||||| ||||||||| |  ||||||||||||||| |||||||| ||||||||  ||||||||||    
T  24706544 acctctcttgtgccttccatgaaggggcaccaactcatgacgttgagcactgtttctctttgaagatcaaagtccagaa 24706466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 231
Target Start/End: Original strand, 32002753 - 32002842
Alignment:
Q  142 tgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactgattga 231  Q
    ||||||||  ||||||||||||||||| || |  || || ||||| ||||| |||||||| ||||||||||||||||||||  |||||||    
T  32002753 tgacctctcctgtgccttccatcaaggagctcccggccacgacgtcgagcactgtttctctttgaagattgaagtccagaagttgattga 32002842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 20736703 - 20736780
Alignment:
Q  154 tgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactgattga 231  Q
    ||||||||||||||| ||||  || |||||| |  |||| |||||||| ||||||| |||||||||||| || |||||    
T  20736703 tgccttccatcaaggagcaccgggccatgacatcaagcactgtttctctttgaagactgaagtccagaagcttattga 20736780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 20745261 - 20745338
Alignment:
Q  154 tgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactgattga 231  Q
    ||||||||||||||| ||||  || |||||| |  |||| |||||||| ||||||| |||||||||||| || |||||    
T  20745261 tgccttccatcaaggagcaccgggccatgacatcaagcactgtttctctttgaagactgaagtccagaagcttattga 20745338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1197 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold1197
Description:

Target: scaffold1197; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 2393 - 2458
Alignment:
Q  1 tcatcaggctcagaaaacaccgcagtatgatccgattcctatgaaatatgcggagctgcttccttc 66  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2393 tcatcaggctcggaaaacaccgcagtatgatctgattcctatgaaatatgcggagctgcttccttc 2458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 231
Target Start/End: Complemental strand, 24850 - 24761
Alignment:
Q  142 tgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactgattga 231  Q
    ||||||||  ||||||||||||||||| ||||  || |||||| | || || |||||||| |||||||||||||||||||| ||||||||    
T  24850 tgacctctcatgtgccttccatcaaggagcacccggccatgacatcgaacactgtttctctttgaagattgaagtccagaagctgattga 24761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0357 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0357
Description:

Target: scaffold0357; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 152 - 231
Target Start/End: Original strand, 9342 - 9421
Alignment:
Q  152 tgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactgattga 231  Q
    ||||||||||||||||| || |  || |||||| | |||||||||||||| ||||| |||||||||||||| ||||||||    
T  9342 tgtgccttccatcaaggagctcccggccatgacatcgagcattgtttctctttgaaaattgaagtccagaagctgattga 9421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 31876 - 31956
Alignment:
Q  142 tgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaa 222  Q
    ||||||||  ||||||||||||||||| || |  || |||||| | ||||| |||||||| ||||||||||||||||||||    
T  31876 tgacctctcctgtgccttccatcaaggagctcccggccatgacatcgagcactgtttctctttgaagattgaagtccagaa 31956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 198
Target Start/End: Complemental strand, 71138 - 71083
Alignment:
Q  143 gacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgttt 198  Q
    |||||||||||||| |||||||||||||||| |||||||||  ||||||| |||||    
T  71138 gacctcttttgtgctttccatcaaggggcaccaggtcatgatattgagcactgttt 71083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 197
Target Start/End: Complemental strand, 71514 - 71468
Alignment:
Q  151 ttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtt 197  Q
    ||||||||||||||||||||||| ||||||||||  |||||| ||||    
T  71514 ttgtgccttccatcaaggggcaccaggtcatgacactgagcagtgtt 71468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 231
Target Start/End: Original strand, 99449 - 99538
Alignment:
Q  142 tgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactgattga 231  Q
    ||||||||  ||||||||||||||||| || |  || || || || ||||| |||||||| ||||||||||||||||||||  |||||||    
T  99449 tgacctctcctgtgccttccatcaaggagctcccggccacgatgtcgagcactgtttctcattgaagattgaagtccagaagttgattga 99538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 10808 - 10864
Alignment:
Q  142 tgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgttt 198  Q
    |||||||| |||||| |||||||||||||||| ||||||||| | ||| ||||||||    
T  10808 tgacctctcttgtgctttccatcaaggggcaccaggtcatgatgctgaacattgttt 10864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 183
Target Start/End: Original strand, 19124 - 19224
Alignment:
Q  83 cttgtccagaccagaccacccccgccgatacctaagaaattgccggctaggtggagacttgacctcttttgtgccttccatcaaggggcacaaggtcatg 182  Q
    |||||||||||||||||||  || |  || |||||||||||||| ||| |||  || |  ||||||| ||||| |||||||||||||||||  |||||||    
T  19124 cttgtccagaccagaccacatcctcgtatgcctaagaaattgccagctgggtataggcccgacctctcttgtgtcttccatcaaggggcacctggtcatg 19223  T
Q  183 a 183  Q
    |    
T  19224 a 19224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0600 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0600
Description:

Target: scaffold0600; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 221
Target Start/End: Original strand, 8992 - 9059
Alignment:
Q  154 tgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccaga 221  Q
    ||||||||||||||| || |  |  |||||||||||||| | |||||| |||||||||||||||||||    
T  8992 tgccttccatcaaggagctcccgaccatgacgttgagcactatttctctttgaagattgaagtccaga 9059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 197
Target Start/End: Original strand, 152731 - 152786
Alignment:
Q  142 tgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtt 197  Q
    ||||| |||||||||||||||||||||||||| ||| |||||| | ||||| ||||    
T  152731 tgaccgcttttgtgccttccatcaaggggcactaggacatgacatcgagcactgtt 152786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0605 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0605
Description:

Target: scaffold0605; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 180
Target Start/End: Complemental strand, 5304 - 5266
Alignment:
Q  142 tgacctcttttgtgccttccatcaaggggcacaaggtca 180  Q
    |||||||| ||||||||||||||||||||||| ||||||    
T  5304 tgacctctcttgtgccttccatcaaggggcaccaggtca 5266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 231
Target Start/End: Complemental strand, 31123 - 31053
Alignment:
Q  161 catcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaactgattga 231  Q
    |||||||| ||||  || |||||| | ||||| |||||||| ||||||||||||||||| || ||||||||    
T  31123 catcaaggagcacctggccatgacatcgagcaatgtttctctttgaagattgaagtccataagctgattga 31053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 197
Target Start/End: Original strand, 301987 - 302032
Alignment:
Q  152 tgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtt 197  Q
    ||||||||||||||||||||||  || |||||| ||||||||||||    
T  301987 tgtgccttccatcaaggggcacccggccatgacattgagcattgtt 302032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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