View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6441_high_15 (Length: 231)

Name: NF6441_high_15
Description: NF6441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6441_high_15
NF6441_high_15
[»] chr4 (16 HSPs)
chr4 (1-231)||(6834036-6834266)
chr4 (1-231)||(6750709-6750939)
chr4 (1-231)||(6500223-6500453)
chr4 (1-231)||(6535527-6535757)
chr4 (1-228)||(6672520-6672747)
chr4 (1-231)||(6756327-6756557)
chr4 (1-231)||(6813636-6813866)
chr4 (1-231)||(6713673-6713903)
chr4 (1-230)||(6648918-6649147)
chr4 (33-231)||(6725792-6725990)
chr4 (1-231)||(6547778-6548008)
chr4 (1-231)||(6624304-6624534)
chr4 (1-231)||(6794306-6794536)
chr4 (26-226)||(8412730-8412930)
chr4 (1-231)||(6589912-6590142)
chr4 (199-231)||(6792148-6792180)
[»] scaffold0373 (1 HSPs)
scaffold0373 (1-231)||(11767-11998)
[»] scaffold0729 (1 HSPs)
scaffold0729 (199-231)||(6449-6481)


Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-128; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 6834266 - 6834036
Alignment:
Q  1 tcatcaagcacaaaaagcacccttttctgagcaagtctttgcttcaatataattttccctgattcgatgtcatgtatcttggatgttgttgttttgtaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6834266 tcatcaagcacaaaaagcacccttttctgagcaagtctttgcttcaatataattttccctgattcgatgtcatgtatcttggatgttgttgttttgtaaa 6834167  T
Q  101 catcacaaagtacctgttgctgcagtgaaactagattagtatgtgtctcccagaattcccgtacacccaaaaggaagctcattccctcaaatttgctccc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6834166 catcacaaagtacctgttgctgcagtgaaactagattagtatgtgtctcccagaattcccgtacacccaaaaggaagctcattccctcaaatttgctccc 6834067  T
Q  201 aatttgattataaatggctttggcaatggtt 231  Q
    |||||||||||||||||||||||||||||||    
T  6834066 aatttgattataaatggctttggcaatggtt 6834036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 6750939 - 6750709
Alignment:
Q  1 tcatcaagcacaaaaagcacccttttctgagcaagtctttgcttcaatataattttccctgattcgatgtcatgtatcttggatgttgttgttttgtaaa 100  Q
    ||||||||||||| ||| ||||| ||||| ||||||||||||||||||||  ||||||||||||| |||||| |||||||| || |||||||||||||||    
T  6750939 tcatcaagcacaagaagtaccctattctgggcaagtctttgcttcaatatgtttttccctgattctatgtcacgtatcttgaattttgttgttttgtaaa 6750840  T
Q  101 catcacaaagtacctgttgctgcagtgaaactagattagtatgtgtctcccagaattcccgtacacccaaaaggaagctcattccctcaaatttgctccc 200  Q
    ||||||| ||||| |||||||| ||||||||| ||||||||||||||||||| ||||||| || | ||| |||||||||| |||||||||||||||||||    
T  6750839 catcacagagtacttgttgctgtagtgaaacttgattagtatgtgtctcccaaaattcccttatatccataaggaagctccttccctcaaatttgctccc 6750740  T
Q  201 aatttgattataaatggctttggcaatggtt 231  Q
    ||||| ||| |||||||||||||||||||||    
T  6750739 aatttcattgtaaatggctttggcaatggtt 6750709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 6500223 - 6500453
Alignment:
Q  1 tcatcaagcacaaaaagcacccttttctgagcaagtctttgcttcaatataattttccctgattcgatgtcatgtatcttggatgttgttgttttgtaaa 100  Q
    ||||||||||||||||| ||| ||||||||| |||||||||| |||||||  ||||||||||||| |||||| |||||||| || |||||||||||||||    
T  6500223 tcatcaagcacaaaaagtacctttttctgagaaagtctttgcctcaatatgtttttccctgattctatgtcacgtatcttgaattttgttgttttgtaaa 6500322  T
Q  101 catcacaaagtacctgttgctgcagtgaaactagattagtatgtgtctcccagaattcccgtacacccaaaaggaagctcattccctcaaatttgctccc 200  Q
    |||||||||| |||| |||||| ||||||||| ||||||||| ||| ||||| || |||| || |  || |||||||||| | |||||||||| ||||||    
T  6500323 catcacaaagcaccttttgctgtagtgaaacttgattagtatctgtttcccaaaactcccttatattcagaaggaagctcctaccctcaaattcgctccc 6500422  T
Q  201 aatttgattataaatggctttggcaatggtt 231  Q
    |||||||||||||||||||||||||||||||    
T  6500423 aatttgattataaatggctttggcaatggtt 6500453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 6535527 - 6535757
Alignment:
Q  1 tcatcaagcacaaaaagcacccttttctgagcaagtctttgcttcaatataattttccctgattcgatgtcatgtatcttggatgttgttgttttgtaaa 100  Q
    |||||||| |||||||  ||||||||||| | ||||||||||||||||||| ||||||||||||| |||||| |||||||| |||  |||||||||||||    
T  6535527 tcatcaagtacaaaaaatacccttttctgggaaagtctttgcttcaatatatttttccctgattcaatgtcacgtatcttgaatgaagttgttttgtaaa 6535626  T
Q  101 catcacaaagtacctgttgctgcagtgaaactagattagtatgtgtctcccagaattcccgtacacccaaaaggaagctcattccctcaaatttgctccc 200  Q
    ||||||||||||| |||||||| ||||||||| ||||||||  ||||||||| ||||||| || |  || |||||||||| |||| ||||| ||||| ||    
T  6535627 catcacaaagtacttgttgctgtagtgaaacttgattagtacctgtctcccaaaattcccttatattcagaaggaagctctttccatcaaacttgctacc 6535726  T
Q  201 aatttgattataaatggctttggcaatggtt 231  Q
    ||||| |||||||||||||||||||||||||    
T  6535727 aatttcattataaatggctttggcaatggtt 6535757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 6672747 - 6672520
Alignment:
Q  1 tcatcaagcacaaaaagcacccttttctgagcaagtctttgcttcaatataattttccctgattcgatgtcatgtatcttggatgttgttgttttgtaaa 100  Q
    ||||||||||||| ||| ||| |  |||| |||||||||| ||||| |||| |||||| |||||| |||||| |||||||| |||| ||||||||||| |    
T  6672747 tcatcaagcacaagaagtaccttgctctgggcaagtctttccttcagtatatttttccttgattctatgtcacgtatcttgaatgtcgttgttttgtaga 6672648  T
Q  101 catcacaaagtacctgttgctgcagtgaaactagattagtatgtgtctcccagaattcccgtacacccaaaaggaagctcattccctcaaatttgctccc 200  Q
    |||||||||||||||||||||| || |||||||||||| ||  ||||||||| ||||||| || |  || |||||||||| |||||||||||||||||||    
T  6672647 catcacaaagtacctgttgctgtagagaaactagattaatacatgtctcccaaaattcccttataatcagaaggaagctccttccctcaaatttgctccc 6672548  T
Q  201 aatttgattataaatggctttggcaatg 228  Q
    ||||||||| ||||||||||||||||||    
T  6672547 aatttgattgtaaatggctttggcaatg 6672520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 6756557 - 6756327
Alignment:
Q  1 tcatcaagcacaaaaagcacccttttctgagcaagtctttgcttcaatataattttccctgattcgatgtcatgtatcttggatgttgttgttttgtaaa 100  Q
    ||||||||||| | ||| ||||| ||||| || |||||||||||||||||| ||||||||||||| |||||| |||||||| |||| ||||||| ||||     
T  6756557 tcatcaagcactagaagtaccctattctgggccagtctttgcttcaatatatttttccctgattctatgtcacgtatcttgaatgtcgttgtttcgtaag 6756458  T
Q  101 catcacaaagtacctgttgctgcagtgaaactagattagtatgtgtctcccagaattcccgtacacccaaaaggaagctcattccctcaaatttgctccc 200  Q
    |||| || ||||||||||| || ||||||||| ||||||||| ||||||||| || || | || |  || |||||||||| ||||||||||||| || ||    
T  6756457 catcgcagagtacctgttgttgtagtgaaacttgattagtatctgtctcccaaaactctcttatattcagaaggaagctccttccctcaaattttcttcc 6756358  T
Q  201 aatttgattataaatggctttggcaatggtt 231  Q
    ||||| |||||||||||||||||||||||||    
T  6756357 aatttcattataaatggctttggcaatggtt 6756327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 6813866 - 6813636
Alignment:
Q  1 tcatcaagcacaaaaagcacccttttctgagcaagtctttgcttcaatataattttccctgattcgatgtcatgtatcttggatgttgttgttttgtaaa 100  Q
    ||||||||||||| ||| ||| | ||||| | |||||||| |||||||||| ||||||||||||||||||||||||||||| |||  ||||||||| |||    
T  6813866 tcatcaagcacaagaagtaccttcttctgggaaagtctttccttcaatatatttttccctgattcgatgtcatgtatcttgaatgccgttgttttgcaaa 6813767  T
Q  101 catcacaaagtacctgttgctgcagtgaaactagattagtatgtgtctcccagaattcccgtacacccaaaaggaagctcattccctcaaatttgctccc 200  Q
    ||||||||||||  |||||||| || |||||| ||||||||| ||||||||| | |||||  |    || ||| |||||| |||||||||||||||||||    
T  6813766 catcacaaagtatttgttgctgtagagaaacttgattagtatctgtctcccaaagttccctaatgttcagaagaaagctccttccctcaaatttgctccc 6813667  T
Q  201 aatttgattataaatggctttggcaatggtt 231  Q
    ||||||||||||||| |||||||||| ||||    
T  6813666 aatttgattataaattgctttggcaagggtt 6813636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 6713903 - 6713673
Alignment:
Q  1 tcatcaagcacaaaaagcacccttttctgagcaagtctttgcttcaatataattttccctgattcgatgtcatgtatcttggatgttgttgttttgtaaa 100  Q
    ||||||||||||| ||| |||||||||||||||||||||| |||||||| | ||||||||||||| |||||| ||||||||  |  ||||||||||||||    
T  6713903 tcatcaagcacaagaagtacccttttctgagcaagtctttccttcaataaatttttccctgattcaatgtcaagtatcttgagttctgttgttttgtaaa 6713804  T
Q  101 catcacaaagtacctgttgctgcagtgaaactagattagtatgtgtctcccagaattcccgtacacccaaaaggaagctcattccctcaaatttgctccc 200  Q
    ||||||||||||  |||||||| || |||||| ||||||||| ||||||||| | |||||  |     | ||| |||||| |||||||||||||| | ||    
T  6713803 catcacaaagtatttgttgctgtagagaaacttgattagtatctgtctcccaaacttccctaatgtttagaagaaagctccttccctcaaatttgatacc 6713704  T
Q  201 aatttgattataaatggctttggcaatggtt 231  Q
    |||||||||||||||||||||||||| ||||    
T  6713703 aatttgattataaatggctttggcaagggtt 6713673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 6649147 - 6648918
Alignment:
Q  1 tcatcaagcacaaaaagcacccttttctgagcaagtctttgcttcaatataattttccctgattcgatgtcatgtatcttggatgttgttgttttgtaaa 100  Q
    ||||||||||||| ||| ||||| ||||| | ||||||||  |||||| || ||||||||||||| |||||| |||||||| |||| || ||||||||||    
T  6649147 tcatcaagcacaataagtaccctattctgggaaagtctttctttcaatgtatttttccctgattctatgtcacgtatcttgaatgtcgtagttttgtaaa 6649048  T
Q  101 catcacaaagtacctgttgctgcagtgaaactagattagtatgtgtctcccagaattcccgtacacccaaaaggaagctcattccctcaaatttgctccc 200  Q
    |||||||||| |  ||||| || || |||||||||||| ||| ||||||||| ||||| | || |  || |||||||||| | |||||||||||| ||||    
T  6649047 catcacaaagaagttgttgttgtagagaaactagattaatatttgtctcccaaaattctcttatattcagaaggaagctcctcccctcaaatttgttccc 6648948  T
Q  201 aatttgattataaatggctttggcaatggt 230  Q
    ||||||||||||||||||||||||||||||    
T  6648947 aatttgattataaatggctttggcaatggt 6648918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 33 - 231
Target Start/End: Complemental strand, 6725990 - 6725792
Alignment:
Q  33 aagtctttgcttcaatataattttccctgattcgatgtcatgtatcttggatgttgttgttttgtaaacatcacaaagtacctgttgctgcagtgaaact 132  Q
    |||||||| |||||||||| ||||||||||||| |||||| |||||||| |||||  |||||||||||||||||||||||||| |||||| || ||||||    
T  6725990 aagtctttccttcaatatatttttccctgattctatgtcacgtatcttgaatgttaatgttttgtaaacatcacaaagtaccttttgctgtagagaaact 6725891  T
Q  133 agattagtatgtgtctcccagaattcccgtacacccaaaaggaagctcattccctcaaatttgctcccaatttgattataaatggctttggcaatggtt 231  Q
    ||||| |||| ||||||||| |||||||  | |   | ||  |||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  6725890 agattggtatttgtctcccaaaattccctgatatttagaacaaagctccttccctcaaatttgctaccaatttgattataaatggctttggcaagggtt 6725792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 6547778 - 6548008
Alignment:
Q  1 tcatcaagcacaaaaagcacccttttctgagcaagtctttgcttcaatataattttccctgattcgatgtcatgtatcttggatgttgttgttttgtaaa 100  Q
    ||||||||||| |||||||| || || |  |  ||||||| ||| ||| || ||||||||||||| |||||| |||||||| |||  |||||||||||||    
T  6547778 tcatcaagcactaaaagcactctattatcggagagtctttcctttaatgtatttttccctgattcaatgtcacgtatcttgaatgaagttgttttgtaaa 6547877  T
Q  101 catcacaaagtacctgttgctgcagtgaaactagattagtatgtgtctcccagaattcccgtacacccaaaaggaagctcattccctcaaatttgctccc 200  Q
    ||||||||||||| |||||||| ||||||||| ||||||||  ||||||||| ||||||| || |  || |||||||||| |||| ||||| ||||| ||    
T  6547878 catcacaaagtacttgttgctgtagtgaaacttgattagtacctgtctcccaaaattcccttatattcagaaggaagctctttccgtcaaacttgctacc 6547977  T
Q  201 aatttgattataaatggctttggcaatggtt 231  Q
    ||||| ||||||||||| |||||| ||||||    
T  6547978 aatttcattataaatggatttggctatggtt 6548008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 6624304 - 6624534
Alignment:
Q  1 tcatcaagcacaaaaagcacccttttctgagcaagtctttgcttcaatataattttccctgattcgatgtcatgtatcttggatgttgttgttttgtaaa 100  Q
    ||||||||||||| ||| ||||| ||||| |||||||||| |||||||||| |||||||||||||||| ||  |||||||| |||  |||||||||||||    
T  6624304 tcatcaagcacaagaagtaccctattctgggcaagtctttccttcaatatatttttccctgattcgatatcgcgtatcttgaatgccgttgttttgtaaa 6624403  T
Q  101 catcacaaagtacctgttgctgcagtgaaactagattagtatgtgtctcccagaattcccgtacacccaaaaggaagctcattccctcaaatttgctccc 200  Q
    ||||||||||||  ||||| ||||| |||||  |||| | || |||||| || ||||| | || |  |||||| ||||||  ||| || ||||| |||||    
T  6624404 catcacaaagtatttgttgttgcagagaaacatgattggcatctgtctcgcaaaattctcttatattcaaaagaaagctccgtccatcgaattttctccc 6624503  T
Q  201 aatttgattataaatggctttggcaatggtt 231  Q
    ||||||||||||||| |||||||||||||||    
T  6624504 aatttgattataaatcgctttggcaatggtt 6624534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 6794536 - 6794306
Alignment:
Q  1 tcatcaagcacaaaaagcacccttttctgagcaagtctttgcttcaatataattttccctgattcgatgtcatgtatcttggatgttgttgttttgtaaa 100  Q
    ||||||||||||| ||| | ||||||||| |||||||||| |||||||||| ||||||||||||| || ||| |||| ||| ||||   || ||||||||    
T  6794536 tcatcaagcacaagaagtatccttttctgggcaagtctttccttcaatatatttttccctgattctatatcacgtattttgaatgtcagtgctttgtaaa 6794437  T
Q  101 catcacaaagtacctgttgctgcagtgaaactagattagtatgtgtctcccagaattcccgtacacccaaaaggaagctcattccctcaaatttgctccc 200  Q
    |||||  ||||| ||||||||| || |||||| ||||||||| ||| ||||| | |||||  |    ||||||||||||| |||||||||||||||||||    
T  6794436 catcatgaagtatctgttgctgtagagaaacttgattagtatctgtgtcccaaacttccctaatgttcaaaaggaagctccttccctcaaatttgctccc 6794337  T
Q  201 aatttgattataaatggctttggcaatggtt 231  Q
    ||||||||||| ||||||||| |||| ||||    
T  6794336 aatttgattatgaatggctttagcaagggtt 6794306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 26 - 226
Target Start/End: Complemental strand, 8412930 - 8412730
Alignment:
Q  26 tctgagcaagtctttgcttcaatataattttccctgattcgatgtcatgtatcttggatgttgttgttttgtaaacatcacaaagtacctgttgctgcag 125  Q
    |||| |||||||||| ||||| |||| ||||||||||| | ||||||||||||||| ||||   ||||||||||| ||||||||||||| ||||||| ||    
T  8412930 tctgggcaagtctttccttcagtatacttttccctgatactatgtcatgtatcttgtatgtcaatgttttgtaaaaatcacaaagtaccagttgctgtag 8412831  T
Q  126 tgaaactagattagtatgtgtctcccagaattcccgtacacccaaaaggaagctcattccctcaaatttgctcccaatttgattataaatggctttggca 225  Q
     |||||||||||||||| | ||||||| ||||||| || |   | || ||||| | ||||||||||||| || |||||||||||||||||||||||||||    
T  8412830 agaaactagattagtatttttctcccaaaattcccttatatttagaacgaagcactttccctcaaattttctaccaatttgattataaatggctttggca 8412731  T
Q  226 a 226  Q
    |    
T  8412730 a 8412730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 6589912 - 6590142
Alignment:
Q  1 tcatcaagcacaaaaagcacccttttctgagcaagtctttgcttcaatataattttccctgattcgatgtcatgtatcttggatgttgttgttttgtaaa 100  Q
    ||||||| ||||| ||| ||||| ||||| | |||| ||| |||||| ||| |||| |||||||| |  ||| |||||||| ||||   |||||||||||    
T  6589912 tcatcaaacacaagaagaaccctattctgggaaagtttttccttcaacatatttttgcctgattctagatcacgtatcttgaatgtcaatgttttgtaaa 6590011  T
Q  101 catcacaaagtacctgttgctgcagtgaaactagattagtatgtgtctcccagaattcccgtacacccaaaaggaagctcattccctcaaatttgctccc 200  Q
    |||||  ||||| || |||||| || |||||| ||||||||| ||||||||| || || | || |  || ||| |||||| |||||||||||||||||||    
T  6590012 catcatcaagtatcttttgctgtagagaaacttgattagtatctgtctcccataactctcttatattcagaagaaagctccttccctcaaatttgctccc 6590111  T
Q  201 aatttgattataaatggctttggcaatggtt 231  Q
    ||||||||||||||| |||||||||| ||||    
T  6590112 aatttgattataaattgctttggcaagggtt 6590142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 6792180 - 6792148
Alignment:
Q  199 ccaatttgattataaatggctttggcaatggtt 231  Q
    |||||||||| ||||||||||||||||||||||    
T  6792180 ccaatttgatcataaatggctttggcaatggtt 6792148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 11767 - 11998
Alignment:
Q  1 tcatcaagcacaaaaagcacccttttctgagcaagtctttgcttcaatataattttccctgattcgatgtcatgtatcttggatgttgttgttttgtaaa 100  Q
    ||||||||||||| ||| | ||||||||| |||||||||| |||||||||| ||||||||||||| || ||| |||| ||| ||||   || ||||||||    
T  11767 tcatcaagcacaagaagtatccttttctgggcaagtctttccttcaatatatttttccctgattctatatcacgtattttgaatgtcagtgctttgtaaa 11866  T
Q  101 catcacaaagtacctgttgctgcagtgaaactagattagtatgtgtct-cccagaattcccgtacacccaaaaggaagctcattccctcaaatttgctcc 199  Q
    |||||  ||||| ||||||||| |   ||||| ||||||||| ||| | |||| | |||||  |    ||||||||||||| ||||||||||||||||||    
T  11867 catcatgaagtatctgttgctgtacacaaacttgattagtatctgtgtccccaaacttccctaatgttcaaaaggaagctccttccctcaaatttgctcc 11966  T
Q  200 caatttgattataaatggctttggcaatggtt 231  Q
    |||||||||||| ||||||||| |||| ||||    
T  11967 caatttgattatgaatggctttagcaagggtt 11998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0729 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0729
Description:

Target: scaffold0729; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 6449 - 6481
Alignment:
Q  199 ccaatttgattataaatggctttggcaatggtt 231  Q
    |||||||||| ||||||||||||||||||||||    
T  6449 ccaatttgatcataaatggctttggcaatggtt 6481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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