View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6441_high_4 (Length: 454)
Name: NF6441_high_4
Description: NF6441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6441_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 111 - 444
Target Start/End: Complemental strand, 6888707 - 6888378
Alignment:
| Q |
111 |
aaggacgaaatattcacaagaatctgagtttaatttctagatgaaacaatttttgatcaagctttatttacctgttgaactccggattatccggg-ccat |
209 |
Q |
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| T |
6888707 |
aaggacgaaatattcacaagaatctaagtttaatttctaaatgaaataatttttgatcaagctttatttacctgttgaattccggattaccaggggccat |
6888608 |
T |
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| Q |
210 |
tttccttggtaactggaggttaacacacaaaaaacatgttattattgtttacacccaatacatgttataacattattactagtcaattaaatatagggca |
309 |
Q |
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| T |
6888607 |
tttccttggtaacaggaggttaacacacaaaaaacatgttattattgtttacacccaatacatgttataacattattactagtcaattaaatatagggca |
6888508 |
T |
|
| Q |
310 |
aggtaaattcccctcaaatgattgatgattatgtgggtggaaacacaaccggatgtgagttatttggatgtttaaattctttctattttgttgcttgaag |
409 |
Q |
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| T |
6888507 |
aggtaaattcccctcaaatgattgatgattatgtgagtggaaacacaaccggatgtgagttatttgaatgtctaaattctatcta-----ttgcttgaag |
6888413 |
T |
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| Q |
410 |
aaaagcaacgatttaagtttggatttgtgatgatg |
444 |
Q |
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| T |
6888412 |
aaaagcaaagatttaagtttggatttgtgatgatg |
6888378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 6888830 - 6888786
Alignment:
| Q |
66 |
agtcaacgcggagttaaatttatataaaattattttacacattat |
110 |
Q |
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| T |
6888830 |
agtcaacgcggagttaaatttatataaaattattttacacattat |
6888786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 114 - 180
Target Start/End: Complemental strand, 45378390 - 45378324
Alignment:
| Q |
114 |
gacgaaatattcacaagaatctgagtttaatttctagatgaaacaatttttgatcaagctttattta |
180 |
Q |
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| T |
45378390 |
gacgaattattcaaaataatttgagtttaattcctagatgaaacaattattgatcaaactttattta |
45378324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 394 - 442
Target Start/End: Complemental strand, 8402776 - 8402728
Alignment:
| Q |
394 |
attttgttgcttgaagaaaagcaacgatttaagtttggatttgtgatga |
442 |
Q |
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| T |
8402776 |
attttgttgcttgaggaaaagcaacgatttaagtttggggttgtgatga |
8402728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 183
Target Start/End: Complemental strand, 5550706 - 5550641
Alignment:
| Q |
118 |
aaatattcacaagaatctgagtttaatttctagatgaaacaatttttgatcaagctttatttacct |
183 |
Q |
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| T |
5550706 |
aaatattcaaaagactctgagtttaatttcttgataaaataattttttatcagactttacttacct |
5550641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 443
Target Start/End: Complemental strand, 22644089 - 22644041
Alignment:
| Q |
394 |
attttgttgcttgaagaaaagcaacgatttaagtttggatttgtgatgat |
443 |
Q |
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| T |
22644089 |
attttgttgcttgaggataagcaacggtttaagtttgg-tttgtgatgat |
22644041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 17703196 - 17703152
Alignment:
| Q |
139 |
tttaatttctagatgaaacaatttttgatcaagctttatttacct |
183 |
Q |
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| T |
17703196 |
tttaatttctggatgaaacaattatttatcatgctttatttacct |
17703152 |
T |
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