View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6441_low_11 (Length: 270)
Name: NF6441_low_11
Description: NF6441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6441_low_11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 7 - 270
Target Start/End: Complemental strand, 28112731 - 28112468
Alignment:
| Q |
7 |
cttggggtaatattggcatactcaagctgatgagattggaattagcacatgttaacaatctatttcaatgtctactggttttggttttcatattggttgg |
106 |
Q |
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| T |
28112731 |
cttggggtaatattggcatactcaagctgatgagattggaattagcacatgttaacaatctatttcaatgtctactggttttggttttcatattggttgg |
28112632 |
T |
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| Q |
107 |
aatgtgatgaatatttcaagattgtttttgcttgcctggtgctggtactaattttattcaacattgcaaaaactagtgtgctgtaagatattaatttgtc |
206 |
Q |
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| T |
28112631 |
aatgtgatgaatatttcaagattgtttttgcttgcctggtgctggtactaattttattcaacattgcaaaaactagtgtgctgtaagatattaatttgtc |
28112532 |
T |
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| Q |
207 |
agtctagaaatttttgtttagcatctgttgtggttgctgttatttgatcggttcagtacctatt |
270 |
Q |
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| T |
28112531 |
agtctagaaatttttgtttagcatctgttgtggttgctgtcatttgatcggttcagtacctatt |
28112468 |
T |
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