View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6441_low_12 (Length: 268)
Name: NF6441_low_12
Description: NF6441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6441_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 117 - 258
Target Start/End: Complemental strand, 45771116 - 45770975
Alignment:
| Q |
117 |
agattttcttgaccatggggttggatttcaaatcgtagccctgcattttcaattccctcctcacgacctctggcatcctcagcagtttcatgcatgtact |
216 |
Q |
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| T |
45771116 |
agattttcttgaccatggggttggatttcaaatcgtagccctgcattttcaattccctcctcacgacctctggcatcctcagcagtttcatgcatgtact |
45771017 |
T |
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| Q |
217 |
catcctcattagtagcagcaaatcccccatcaaaatcttgat |
258 |
Q |
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| T |
45771016 |
catcctcattagtagcagcaaatcccccatcaaaatcttgat |
45770975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 45771235 - 45771160
Alignment:
| Q |
4 |
gatggacatcatcttcttcaaaatcattatgttcttcatcatcttcatccacatcttcaccgtcaactccagacat |
79 |
Q |
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|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
45771235 |
gatggacatcgtcttcttcaaaatcattatgttcttcgtcatcttcatccacatcttcaccgtcaactccagacat |
45771160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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