View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6441_low_2 (Length: 582)
Name: NF6441_low_2
Description: NF6441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6441_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 1 - 573
Target Start/End: Complemental strand, 34437642 - 34437083
Alignment:
| Q |
1 |
tctagaccgtcctattaagatcgtacatctcagttgacttattaattggtatcgggcaaggaccgactaatctagcggcacaatccctggtactttgatt |
100 |
Q |
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| T |
34437642 |
tctagaccgacctattaagatcgtacatctcagttgacttattaattggtatcgggcaaggaccgactaatctagcggaacaatccctggtactttgatt |
34437543 |
T |
|
| Q |
101 |
tataaatatagtatgatggtctggattgcatgtctatagcatttgagtaaactttcagatagtataaatagtacaaaagagtggctaattcctaagtaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34437542 |
tataaatatagtatgatggtctggattgcatgtctatagcatttgagtaaactttcagatagtataaatagtacaaaagagtggctaattcctaagtaga |
34437443 |
T |
|
| Q |
201 |
actgatactttagattaaagtcgtgtctagtgtctaacatgtatttgtctcatacaccaacatgctaccgacacatgtgttgacttacattcaataattt |
300 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34437442 |
actgatact-------------gtgtctagtgtctaacatgtatttgtctcatacaccaacatgctaccgacacatgtgttgacttacattcaataattt |
34437356 |
T |
|
| Q |
301 |
aattttcttaaatgattaccaatgtctacgtattagtgtcatgtccgatgtgactcataggataatactgtgatattgcagttgagtttgaatagctctg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34437355 |
aattttcttaaatgattaccaatgtctacgtattagtgtcatgtccgatgtgactcataggataatactgtgatattgcagttgagtttgaatagctctg |
34437256 |
T |
|
| Q |
401 |
gagcagtagcttcagttccaaattcatcattctttggaaccagcttaaagaaagttacctcgaggttaccaaacacaaaggtttcatctggaagattcaa |
500 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34437255 |
gagcagtagcttcagttccaagttcatcattctttggaaccagcttaaagaaagttacctcgaggttaccaaacacaaaggtttcatctggaagattcaa |
34437156 |
T |
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| Q |
501 |
aattgttgctgctgagattgatgaaagcaagcaaactgacaaagacaaatggagaggtttggcctatgctact |
573 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
34437155 |
aattgttgctgctgagattaatgaaagcaagcaaactgacaaagacagatggagaggtttggcctatgatact |
34437083 |
T |
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