View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6441_low_3 (Length: 568)

Name: NF6441_low_3
Description: NF6441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6441_low_3
NF6441_low_3
[»] chr4 (15 HSPs)
chr4 (256-568)||(31150690-31151002)
chr4 (8-197)||(31150437-31150626)
chr4 (375-567)||(31162086-31162276)
chr4 (378-568)||(31489054-31489244)
chr4 (386-568)||(31020316-31020498)
chr4 (387-567)||(31496410-31496590)
chr4 (10-145)||(31161733-31161868)
chr4 (386-568)||(31030197-31030379)
chr4 (402-568)||(31159734-31159900)
chr4 (379-479)||(31476558-31476658)
chr4 (387-567)||(31501580-31501760)
chr4 (39-144)||(31034102-31034207)
chr4 (121-171)||(31159451-31159501)
chr4 (10-79)||(31476882-31476951)
chr4 (59-149)||(31528549-31528639)
[»] chr6 (9 HSPs)
chr6 (382-491)||(33642147-33642256)
chr6 (382-504)||(33306927-33307049)
chr6 (380-567)||(31566578-31566765)
chr6 (402-488)||(13608607-13608693)
chr6 (382-560)||(33403052-33403230)
chr6 (386-567)||(33390518-33390699)
chr6 (382-554)||(33288016-33288188)
chr6 (339-376)||(12781883-12781920)
chr6 (371-415)||(12781930-12781974)
[»] chr8 (1 HSPs)
chr8 (402-455)||(6472955-6473008)


Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 256 - 568
Target Start/End: Original strand, 31150690 - 31151002
Alignment:
Q  256 ttccatttagacaactctcttttgattaattaatatagtttctcgaggacgtcgtgatcaattactaaatttatgtgtcaaagcaaagctttaaaatttg 355  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31150690 ttccatttagaaaactctcttttgattaattaatatagtttctcgaggacgtcgtgatcaattactaaatttatgtgtcaaagcaaagctttaaaatttg 31150789  T
Q  356 cacatgtaagtgcatcaataaggaagattacttacttataacgtacatcccatccagagagattggccacttgtgtcagtgcttccctccatctttgcac 455  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31150790 cacatgtaagtgcatcaataaggaagattacttacttataacgtacatcccatccagagagattggccacttgtgtcagtgcttccctccatctttgcac 31150889  T
Q  456 aatttcaaagttttgttggaatctttcttcatgtttagctaaggcttcagcataacatcctttttgatatcgcacctctgatggatcaacatcatagaac 555  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31150890 aatttcaaagttttgttggaatctttcttcatgtttagctaaggcttcagcataacatcctttttgatatcgcacctctgatggatcaacatcatagaac 31150989  T
Q  556 acaggcagaacac 568  Q
    |||||||||||||    
T  31150990 acaggcagaacac 31151002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 197
Target Start/End: Original strand, 31150437 - 31150626
Alignment:
Q  8 ggacatcatcaagcgagtccaaaagtaaatgtttttctaattcatgtagaggagaatgcatcccgactaaattttttggaagattagaaaacttgtaacc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31150437 ggacatcatcaagcgagtccaaaagtaaatgtttttctaattcatgtagaggagaatgcatcccgactaaattttttggaagattagaaaacttgtaacc 31150536  T
Q  108 caacatatttacaatctcttcaacgatcttttcaatctctgcatgttgtggcctgcaagttttattctgttatttaacaacaccaaatca 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31150537 caacatatttacaatctcttcaacgatcttttcaatctctgcatgttgtggcctgcaagttttattctgttatttaacaacaccaaatca 31150626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 375 - 567
Target Start/End: Original strand, 31162086 - 31162276
Alignment:
Q  375 aaggaagattacttacttataacgtacatcccatccagagagattggccacttgtgtcagtgcttccctccatctttgcacaatttcaaagttttgttgg 474  Q
    |||||||||||||||||||| ||| |||||||| |||||||  ||||| ||||||||  | |||||||||||||||||||| || ||| ||| |||||||    
T  31162086 aaggaagattacttacttatgacgcacatcccaaccagaga--ttggcgacttgtgtttgagcttccctccatctttgcaccatctcagagtcttgttgg 31162183  T
Q  475 aatctttcttcatgtttagctaaggcttcagcataacatcctttttgatatcgcacctctgatggatcaacatcatagaacacaggcagaaca 567  Q
    ||||||| |||||||||    ||||||||| |||||  |||||||||||||| || |||  | ||||||||||||||||| ||||||||||||    
T  31162184 aatctttgttcatgtttgaaaaaggcttcaacataatttcctttttgatatctcatctcataaggatcaacatcatagaaaacaggcagaaca 31162276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 378 - 568
Target Start/End: Complemental strand, 31489244 - 31489054
Alignment:
Q  378 gaagattacttacttataacgtacatcccatccagagagattggccacttgtgtcagtgcttccctccatctttgcacaatttcaaagttttgttggaat 477  Q
    ||||||| ||||||||| ||| | |||||| || |||| |||  ||||||||||||| ||||||||||||||||| || |  | | |||  |||||||||    
T  31489244 gaagattgcttacttatcacgaagatcccagcctgagatattccccacttgtgtcagagcttccctccatctttgtaccacatgagagtcatgttggaat 31489145  T
Q  478 ctttcttcatgtttagctaaggcttcagcataacatcctttttgatatcgcacctctgatggatcaacatcatagaacacaggcagaacac 568  Q
     ||| ||||||||| |  ||||||||| | |||  ||||||||||| || |||||| || |||||||||||||| || ||||| |||||||    
T  31489144 gtttgttcatgtttggaaaaggcttcaccgtaaattcctttttgatgtctcacctcagaaggatcaacatcataaaaaacaggaagaacac 31489054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 386 - 568
Target Start/End: Original strand, 31020316 - 31020498
Alignment:
Q  386 cttacttataacgtacatcccatccagagagattggccacttgtgtcagtgcttccctccatctttgcacaatttcaaagttttgttggaatctttcttc 485  Q
    ||||||||| ||| | |||||| ||||||| |||  ||||||||||||| ||||||||||| ||||| || |  | | |||  ||||||||| ||| |||    
T  31020316 cttacttatcacgaagatcccagccagagatattccccacttgtgtcagagcttccctccaactttgtaccacatgagagtcatgttggaatgtttgttc 31020415  T
Q  486 atgtttagctaaggcttcagcataacatcctttttgatatcgcacctctgatggatcaacatcatagaacacaggcagaacac 568  Q
    |||||| |  ||||||||| | |||  ||||||||||| || |||||| || |||||||||||||| || ||||| |||||||    
T  31020416 atgtttggaaaaggcttcaccgtaaattcctttttgatgtctcacctcagaaggatcaacatcataaaaaacaggaagaacac 31020498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 387 - 567
Target Start/End: Complemental strand, 31496590 - 31496410
Alignment:
Q  387 ttacttataacgtacatcccatccagagagattggccacttgtgtcagtgcttccctccatctttgcacaatttcaaagttttgttggaatctttcttca 486  Q
    |||||||| | ||| |||||| ||||||||||  || |||||| | || |||||||||||||||||||| || | | ||| |||||||||||||| ||||    
T  31496590 ttacttatcatgtagatcccaaccagagagatcagcgacttgtattagagcttccctccatctttgcaccatctgagagtcttgttggaatctttgttca 31496491  T
Q  487 tgtttagctaaggcttcagcataacatcctttttgatatcgcacctctgatggatcaacatcatagaacacaggcagaaca 567  Q
    |||||  | || |||||| |||||  |||  |||| | |||||||   || || |||||||||||||| ||||||||||||    
T  31496490 tgtttgacaaatgcttcaccataaattccactttgctttcgcaccatagaagggtcaacatcatagaaaacaggcagaaca 31496410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 10 - 145
Target Start/End: Original strand, 31161733 - 31161868
Alignment:
Q  10 acatcatcaagcgagtccaaaagtaaatgtttttctaattcatgtagaggagaatgcatcccgactaaattttttggaagattagaaaacttgtaaccca 109  Q
    |||||||||| ||| |||||||||||||||||||||||||| | |  | |||||| ||||||  ||||||  ||||||||| | | | ||||||||||||    
T  31161733 acatcatcaaccgaatccaaaagtaaatgtttttctaattcttctgtaagagaatccatcccagctaaataatttggaagacttgtagacttgtaaccca 31161832  T
Q  110 acatatttacaatctcttcaacgatcttttcaatct 145  Q
      ||||| | ||| ||||| ||||||||||||||||    
T  31161833 gtatattcataatttcttcgacgatcttttcaatct 31161868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 386 - 568
Target Start/End: Original strand, 31030197 - 31030379
Alignment:
Q  386 cttacttataacgtacatcccatccagagagattggccacttgtgtcagtgcttccctccatctttgcacaatttcaaagttttgttggaatctttcttc 485  Q
    ||||||||| ||| | |||||| ||||||| |||  ||||||||||||| ||||||||||| ||||| || |  | | | |  ||||||||| ||| |||    
T  31030197 cttacttatcacgaagatcccagccagagatattccccacttgtgtcagagcttccctccaactttgtaccacatgagattcatgttggaatgtttgttc 31030296  T
Q  486 atgtttagctaaggcttcagcataacatcctttttgatatcgcacctctgatggatcaacatcatagaacacaggcagaacac 568  Q
    |||||| |  ||||||||| | |||  ||||||||||| || |||||| || |||||||||||||| || ||||| |||||||    
T  31030297 atgtttggaaaaggcttcaccgtaaattcctttttgatgtctcacctcagaaggatcaacatcataaaaaacaggaagaacac 31030379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 402 - 568
Target Start/End: Original strand, 31159734 - 31159900
Alignment:
Q  402 atcccatccagagagattggccacttgtgtcagtgcttccctccatctttgcacaatttcaaagttttgttggaatctttcttcatgtttagctaaggct 501  Q
    |||||| |||||||||||||| |||||||| ||   | ||||||||||||| || || ||  | |  ||||||||||||||||| ||||| || | ||||    
T  31159734 atcccaaccagagagattggcgacttgtgttagacttgccctccatctttgtaccatctctgattcatgttggaatctttcttcgtgtttggcaagggct 31159833  T
Q  502 tcagcataacatcctttttgatatcgcacctctgatggatcaacatcatagaacacaggcagaacac 568  Q
    ||  |||||| ||| ||||||| || |||||| || ||||||||||||||||| | ||| |||||||    
T  31159834 tctccataacttccattttgatgtctcacctcagaaggatcaacatcatagaaaatagggagaacac 31159900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 379 - 479
Target Start/End: Complemental strand, 31476658 - 31476558
Alignment:
Q  379 aagattacttacttataacgtacatcccatccagagagattggccacttgtgtcagtgcttccctccatctttgcacaatttcaaagttttgttggaatc 478  Q
    ||||||| |||||||| ||||| |||||| |||||||||| ||| ||||||||||| ||| ||||||||| | |||| |||| | ||| ||||| |||||    
T  31476658 aagattatttacttatcacgtagatcccaaccagagagatcggcgacttgtgtcagagctgccctccatcgtagcaccatttgagagtcttgtttgaatc 31476559  T
Q  479 t 479  Q
    |    
T  31476558 t 31476558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 387 - 567
Target Start/End: Complemental strand, 31501760 - 31501580
Alignment:
Q  387 ttacttataacgtacatcccatccagagagattggccacttgtgtcagtgcttccctccatctttgcacaatttcaaagttttgttggaatctttcttca 486  Q
    |||||||| ||||| ||| || ||||| |||  ||| ||||||||||| ||||||||||||||| |||| || | | ||| |||||||||| ||| ||||    
T  31501760 ttacttatcacgtagatcgcaaccagatagaccggcgacttgtgtcagagcttccctccatcttagcaccatctgagagtcttgttggaatatttgttca 31501661  T
Q  487 tgtttagctaaggcttcagcataacatcctttttgatatcgcacctctgatggatcaacatcatagaacacaggcagaaca 567  Q
    |||||  | || ||||||  ||||   ||  |||| | ||||||| | |  ||||||||||||||||| ||||||||||||    
T  31501660 tgtttgacaaatgcttcacaataaatcccactttgctttcgcaccacgggaggatcaacatcatagaaaacaggcagaaca 31501580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 39 - 144
Target Start/End: Original strand, 31034102 - 31034207
Alignment:
Q  39 tttttctaattcatgtagaggagaatgcatcccgactaaattttttggaagattagaaaacttgtaacccaacatatttacaatctcttcaacgatcttt 138  Q
    |||||||||||| | || | ||||||  ||||| ||||||| |||||||||| | ||||||  |||||||||  ||||||  ||||||||||| ||||||    
T  31034102 tttttctaattcttctataagagaatcaatcccaactaaatcttttggaagacttgaaaaccggtaacccaatctatttattatctcttcaacaatcttt 31034201  T
Q  139 tcaatc 144  Q
    ||||||    
T  31034202 tcaatc 31034207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 31159451 - 31159501
Alignment:
Q  121 atctcttcaacgatcttttcaatctctgcatgttgtggcctgcaagtttta 171  Q
    ||||||||||| ||||||||||||||||||| ||| |||||| ||||||||    
T  31159451 atctcttcaacaatcttttcaatctctgcatattgaggcctgaaagtttta 31159501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 31476951 - 31476882
Alignment:
Q  10 acatcatcaagcgagtccaaaagtaaatgtttttctaattcatgtagaggagaatgcatcccgactaaat 79  Q
    ||||||||||  ||||||||||||||| | ||||||||||| |||  |||||||| |||||| |||||||    
T  31476951 acatcatcaacagagtccaaaagtaaaagcttttctaattcttgtctaggagaatccatcccaactaaat 31476882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 59 - 149
Target Start/End: Original strand, 31528549 - 31528639
Alignment:
Q  59 gagaatgcatcccgactaaattttttggaagattagaaaacttgtaacccaacatatttacaatctcttcaacgatcttttcaatctctgc 149  Q
    |||||||| |||| |||||||  ||||||||  | ||||| ||| ||  ||| |||||||| ||||||||||| ||||||| |||||||||    
T  31528549 gagaatgcgtcccaactaaatcatttggaaggcttgaaaatttgcaattcaatatatttactatctcttcaacaatctttttaatctctgc 31528639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 6e-17; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 382 - 491
Target Start/End: Complemental strand, 33642256 - 33642147
Alignment:
Q  382 attacttacttataacgtacatcccatccagagagattggccacttgtgtcagtgcttccctccatctttgcacaatttcaaagttttgttggaatcttt 481  Q
    ||||||||||||| ||||| |||||| ||||||| | |  |||||||| | || |||||||||||||||  ||| |||| ||||| ||||||||||||||    
T  33642256 attacttacttatcacgtagatcccaaccagagatactccccacttgttttagagcttccctccatcttgacaccatttgaaagtcttgttggaatcttt 33642157  T
Q  482 cttcatgttt 491  Q
     |||||||||    
T  33642156 gttcatgttt 33642147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 382 - 504
Target Start/End: Original strand, 33306927 - 33307049
Alignment:
Q  382 attacttacttataacgtacatcccatccagagagattggccacttgtgtcagtgcttccctccatctttgcacaatttcaaagttttgttggaatcttt 481  Q
    ||||||||||||| ||||| |||||| ||||||| | |  |||| ||| | || |||||||||||||||  ||| || ||||||| ||||||||||||||    
T  33306927 attacttacttatcacgtagatcccaaccagagatactccccacatgttttagagcttccctccatcttgacaccatctcaaagtcttgttggaatcttt 33307026  T
Q  482 cttcatgtttagctaaggcttca 504  Q
     |||||||||  | |||||||||    
T  33307027 gttcatgtttgacaaaggcttca 33307049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 380 - 567
Target Start/End: Complemental strand, 31566765 - 31566578
Alignment:
Q  380 agattacttacttataacgtacatcccatccagagagattggccacttgtgtcagtgcttccctccatctttgcacaatttcaaagttttgttggaatct 479  Q
    ||||||||||||||| ||||| |||||| ||| ||| | | ||||||||| | || ||||| |||||||||  ||| || | | ||| |||| |||||||    
T  31566765 agattacttacttatcacgtagatcccaaccaaagatactcgccacttgttttagagcttctctccatcttgacaccatctgagagtcttgtcggaatct 31566666  T
Q  480 ttcttcatgtttagctaaggcttcagcataacatcctttttgatatcgcacctctgatggatcaacatcatagaacacaggcagaaca 567  Q
    || ||||||||| || || ||||||| ||||   ||  |||| | ||| ||||| || ||||||||||||||||| ||| | ||||||    
T  31566665 ttgttcatgtttggcaaaagcttcagaataaatcccactttgctttcgaacctcagaaggatcaacatcatagaaaacaagaagaaca 31566578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 402 - 488
Target Start/End: Complemental strand, 13608693 - 13608607
Alignment:
Q  402 atcccatccagagagattggccacttgtgtcagtgcttccctccatctttgcacaatttcaaagttttgttggaatctttcttcatg 488  Q
    |||||| |||||||||||||| |||||||| || ||| ||||||||||||||||    || ||||||| || |||||||||||||||    
T  13608693 atcccaaccagagagattggctacttgtgttagggctcccctccatctttgcacttcctctaagttttctttgaatctttcttcatg 13608607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 382 - 560
Target Start/End: Original strand, 33403052 - 33403230
Alignment:
Q  382 attacttacttataacgtacatcccatccagagagattggccacttgtgtcagtgcttccctccatctttgcacaatttcaaagttttgttggaatcttt 481  Q
    ||||||||||||| || || |||||| ||||| | | |  |||||||| | || |||||||||||||||  ||| || ||||||  ||||||||||||||    
T  33403052 attacttacttatcacatagatcccaaccagatatactccccacttgttttagagcttccctccatcttgacaccatctcaaagccttgttggaatcttt 33403151  T
Q  482 cttcatgtttagctaaggcttcagcataacatcctttttgatatcgcacctctgatggatcaacatcatagaacacagg 560  Q
     |||||| ||  | |||||||||  ||||   ||  |||| | ||| ||||| || ||||||||||||||||| |||||    
T  33403152 tttcatgcttgacaaaggcttcacaataaataccactttgctttcgaacctcagaaggatcaacatcatagaaaacagg 33403230  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 386 - 567
Target Start/End: Original strand, 33390518 - 33390699
Alignment:
Q  386 cttacttataacgtacatcccatccagagagattggccacttgtgtcagtgcttccctccatctttgcacaatttcaaagttttgttggaatctttcttc 485  Q
    ||||||||| || || |||||| ||||||| | |  |||||||| | || ||||| |||||||||  ||| || | | |||||||||||||||||| |||    
T  33390518 cttacttatcacatagatcccaaccagagatactccccacttgttttagagcttctctccatcttgacaccatctgagagttttgttggaatctttgttc 33390617  T
Q  486 atgtttagctaaggcttcagcataacatcctttttgatatcgcacctctgatggatcaacatcatagaacacaggcagaaca 567  Q
    ||||||  | || |||| | |||||  |||  |||| | ||| ||||| || |||||||||||||| || ||||| ||||||    
T  33390618 atgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatcaacatcataaaaaacaggaagaaca 33390699  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 554
Target Start/End: Original strand, 33288016 - 33288188
Alignment:
Q  382 attacttacttataacgtacatcccatccagagagattggccacttgtgtcagtgcttccctccatctttgcacaatttcaaagttttgttggaatcttt 481  Q
    ||||||||||||| || || |||||| |||| || | |  |||||||| | || |||||||||||||||  ||| || | | ||| |||||||||| |||    
T  33288016 attacttacttatcacatagatcccaaccagcgatactccccacttgttttagggcttccctccatcttgacaccatctgagagtcttgttggaatgttt 33288115  T
Q  482 cttcatgtttagctaaggcttcagcataacatcctttttgatatcgcacctctgatggatcaacatcatagaa 554  Q
     ||||||| | |  ||||||||| |||||   ||  |||| | ||||||||| || |||||||||||||||||    
T  33288116 gttcatgtatggtaaaggcttcaccataaatcccactttgctttcgcacctcagaaggatcaacatcatagaa 33288188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 376
Target Start/End: Original strand, 12781883 - 12781920
Alignment:
Q  339 caaagctttaaaatttgcacatgtaagtgcatcaataa 376  Q
    ||||||||||||||||||||| |||| |||||||||||    
T  12781883 caaagctttaaaatttgcacaagtaattgcatcaataa 12781920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 371 - 415
Target Start/End: Original strand, 12781930 - 12781974
Alignment:
Q  371 caataaggaagattacttacttataacgtacatcccatccagaga 415  Q
    |||||||||||||| ||||||||| ||||| |||||| |||||||    
T  12781930 caataaggaagattgcttacttatcacgtagatcccagccagaga 12781974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 402 - 455
Target Start/End: Original strand, 6472955 - 6473008
Alignment:
Q  402 atcccatccagagagattggccacttgtgtcagtgcttccctccatctttgcac 455  Q
    |||||| |||||||||||||| |||||||| || ||| ||||||||||||||||    
T  6472955 atcccaaccagagagattggctacttgtgttagggctcccctccatctttgcac 6473008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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