View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6441_low_5 (Length: 373)
Name: NF6441_low_5
Description: NF6441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6441_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 358
Target Start/End: Original strand, 7745449 - 7745789
Alignment:
| Q |
18 |
ctttcgttttagtttattttagtaattttagtaattaactttgacaagtcgatggtgtataacgaaccnnnnnnnntgctgtgtgttttgggtatggcag |
117 |
Q |
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| T |
7745449 |
ctttcgttttagtttattttagtaattttagtaattaactttgacaagtcgatggtgtataacgaaccaaaaaaaatgctgtgtgttgtgggtatggcag |
7745548 |
T |
|
| Q |
118 |
taggagaaataagacgaagccaaacagaacactaatccaaaatccatgttatgttatgaattgatctaacaatgcattgagttgattcatacttcaattc |
217 |
Q |
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| T |
7745549 |
taggagaaataagacgaagccaaacagaacactaatccaaaatccatgttatgttatgaattgatctaacaatgcattgagttgattcatacttcaattc |
7745648 |
T |
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| Q |
218 |
aatcacaaacccgnnnnnnnnnncttctgttaatttctagggtttctcaattcacacaaatttccatgggtgtctccttcaaggtctctaaaattggcac |
317 |
Q |
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| T |
7745649 |
aatcacaaacccattttttttttcttctgttaatttctagggtttctcaattcacacaaatttccatgggtgtctccttcaaggtctctaaaattggcac |
7745748 |
T |
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| Q |
318 |
taggtttcgccccaaacctcttcaatcttctcaagatgatg |
358 |
Q |
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| T |
7745749 |
taggtttcgccccaaacctcttcaatcttctcaagatgatg |
7745789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 335
Target Start/End: Original strand, 2335000 - 2335052
Alignment:
| Q |
283 |
atgggtgtctccttcaaggtctctaaaattggcactaggtttcgccccaaacc |
335 |
Q |
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| T |
2335000 |
atggttgtctctttcaaagtctcaaaaactggaactaggtttcgccccaaacc |
2335052 |
T |
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